HHsearch alignment for GI: 254780450 and conserved domain: PRK10364
>PRK10364 sensor protein ZraS; Provisional.
Probab=100.00 E-value=0 Score=425.05 Aligned_cols=236 Identities=30% Similarity=0.486 Sum_probs=211.4
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888764300454
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLA 478 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd 478 (803)
T Consensus 217 ~~~~~R~~Lq~el~r~EKLAaLG~LAAgVAHEIRNPLtsI~G~AqlL~~~~~~~~e~~e~~~iI~~E~~RL~~iI~~LL~ 296 (455)
T PRK10364 217 RYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLE 296 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77899999999999998999999999998998856499999999998676999857999999999999999999999998
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 21200584358534678999999998750356816999814897226998716999999998742276520678857999
Q gi|254780450|r 479 FSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTV 558 (803)
Q Consensus 479 ~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i 558 (803)
T Consensus 297 faRp~~~~~~~vdL~~li~~~l~l~~~~a-~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A--~~~gg~I~I 373 (455)
T PRK10364 297 LVKPTHLALQAVDLNTLINHSLQLVSQDA-NSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQA--IGQHGVISV 373 (455)
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHHHHHH-HHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCCCCEEEE
T ss_conf 72899898848849999999999998688-648909999738888759888999999999999999997--589977999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99850421012245566788978999999788668844542023222210135776530388999998516754999961
Q gi|254780450|r 559 RTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESE 638 (803)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~ 638 (803)
T Consensus 374 ~~~~---------------~~~~V~I~V~DnG~GIp~E~l~rIFePFfTTK~--~GTGLGLaIv~~IVe~HgG~I~v~S~ 436 (455)
T PRK10364 374 TASE---------------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA--EGTGLGLAVVHNIVEQHGGTIQVASQ 436 (455)
T ss_pred EEEE---------------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9998---------------599899999976999797898786589764898--97028899999999988997999955
Q ss_pred CCCCEEEEEEECCCCC
Q ss_conf 8894299999437576
Q gi|254780450|r 639 VGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 639 ~g~Gt~F~i~lP~~~~ 654 (803)
T Consensus 437 ~G~GT~FtI~LPl~a~ 452 (455)
T PRK10364 437 EGKGATFTLWLPVNIT 452 (455)
T ss_pred CCCCEEEEEEEECCCC
T ss_conf 9998799999827875