HHsearch alignment for GI: 254780450 and conserved domain: PRK10529
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional.
Probab=99.87 E-value=1.9e-21 Score=169.13 Aligned_cols=116 Identities=29% Similarity=0.419 Sum_probs=104.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 3 ~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~--~~DlviLDi~lP~~dG~~l~~~iR~~-~~~pII~lt 79 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLS 79 (225)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEECC-CCCCEEEEE
T ss_conf 899997989999999999998899999979999999986117--99899980788888876331000127-998789995
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 468989999999769876540785459999999999714