HHsearch alignment for GI: 254780450 and conserved domain: PRK10618
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.
Probab=99.94 E-value=2.7e-22 Score=175.12 Aligned_cols=385 Identities=17% Similarity=0.199 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEC-EEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999999999999983467509998502-06998315544444548846617986666101111220246666555411
Q gi|254780450|r 279 GDPSGTIANMRFNRFFNNIPMAIASIDKK-GRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQK 357 (803)
Q Consensus 279 ~e~~l~~se~rl~~i~e~~p~~I~~~d~~-g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (803)
T Consensus 334 m~~eL~~~~~l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLLPhl~LqkI--------------------~~MA~qH~ 393 (881)
T PRK10618 334 MSGELRILRAINEEIVSLLPLGLLVYDFSSNRTVISNKIADHLLPHLNLQKI--------------------TTMAEQHQ 393 (881)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCCCCCHHHH--------------------HHHHHHHC
T ss_conf 8889999988688898548750699974689577302678865576678999--------------------99999737
Q ss_pred CCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECC--CCCCCCCCHHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf 233454048873885068999987304566776138999998502--32112210123444-444687630342566415
Q gi|254780450|r 358 SDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEIT--EQKALEARMAQTQK-LNAVGTLAGGIAHDFNNV 434 (803)
Q Consensus 358 ~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DIT--erk~~E~~L~qa~~-~~a~~~~~a~isHelr~p 434 (803)
T Consensus 394 GvIQ---~t-InNevYEIr~~rSq~-----~p~T~LFii~DqDkEvLvnKkLq~AqreYeKN~qaRk~~l~Ni~~el~~P 464 (881)
T PRK10618 394 GVIQ---AT-INNELYEIRMFRSQV-----APRTQLFIIRDQDREVLVNKKLQQAQREYEKNQQARRAFLQNIGDELKEP 464 (881)
T ss_pred CEEE---EE-ECCEEEEEEEEECCC-----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8689---98-836067888542257-----87537999975758999889999999999866999999999999998778
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHHHHHHHHHHH-HHHHHCC
Q ss_conf 899999999998507998478888999999988887643004542120058----43585346789999999-9875035
Q gi|254780450|r 435 LTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLTEVIGNLRMM-IQKLISE 509 (803)
Q Consensus 435 L~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~~~i~~~~~~-~~~~~~~ 509 (803)
T Consensus 465 l~~l~~~~~~l--~~~~-~~--~~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~e~Lp~i~~K 539 (881)
T PRK10618 465 VQSLAELAAQL--NAPE-SQ--QLLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVPEVLPAIKRK 539 (881)
T ss_pred HHHHHHHHHHH--HCCC-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999986--2524-46--7999999999999999988999988860567656771049999999999876898742
Q ss_pred CCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68169998148972269987169999999987422765206788579999985042101224556678897899999978
Q gi|254780450|r 510 PPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDT 589 (803)
Q Consensus 510 ~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~ 589 (803)
T Consensus 540 GL~L~~hn~l~~~~-~~~gD~~aLrkil~lLl~Y---aitTT~~GKItl~v~~~~~~------------~~~l~i~i~DT 603 (881)
T PRK10618 540 GLQLLIHNHLKAND-MRRGDRDALRKILLLLLQY---AVTTTQYGKITLEVDQDESS------------EERLTFRILDT 603 (881)
T ss_pred CCEEEEECCCCHHH-HCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEEEECCCCC------------CCEEEEEEECC
T ss_conf 70333234798899-7047899999999999988---81114452599998258777------------86389999547
Q ss_pred CCCCCHHHHHHCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 86688445420232222---101357765303889999985167549999618894299999437576644333333222
Q gi|254780450|r 590 GIGMSPDIMEKIFEPFF---TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHDI 666 (803)
Q Consensus 590 G~GI~~~~~~~iFepF~---ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~ 666 (803)
T Consensus 604 G~Gls~~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp~~~~~~~~~~------ 677 (881)
T PRK10618 604 GEGVSIHEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLKMLPADPEVEE------ 677 (881)
T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCCCCCC------
T ss_conf 88878888855379776831221113788729999999999848967884156776647998426765555552------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 235444453334787569997698899999999999889899998998999899986599954899858
Q gi|254780450|r 667 AIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDV 735 (803)
Q Consensus 667 ~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~ 735 (803)
T Consensus 678 ------~e~LL--dgV~vlLdIts~eir~IV~~~L~~~GA~~i~~de~--------~~~~e~Dl~lTDn 730 (881)
T PRK10618 678 ------EERLL--DDVTVLLDITSEEIRNIVTRQLENWGATCITPDER--------LISQEYDIFLTDN 730 (881)
T ss_pred ------HHHHH--CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC--------CCCCCCEEEEECC
T ss_conf ------02333--27178886386889999999987429758715756--------7786420787258