HHsearch alignment for GI: 254780450 and conserved domain: PRK10755
>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00 E-value=7.4e-41 Score=305.89 Aligned_cols=209 Identities=21% Similarity=0.265 Sum_probs=158.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEEEH-
Q ss_conf 4468763034256641589999999999850799847888899999998888764300454212005----84358534-
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQT----MRLTVLNL- 492 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~----~~~~~~~l- 492 (803)
T Consensus 141 ~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-~~-----~~~~~~~i~rl~~li~~LL~Lar~~~~~~~~~~~~~~ll 214 (355)
T PRK10755 141 DNERLFTADVAHELRTPLAGVRLHLELLAKTHH-ID-----VAPLIARLDQMMHSVSQLLQLARAGQSFSSGNYQTVKLL 214 (355)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 999999997577740389999999999737575-31-----999999999999999999999858886434544213259
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 67899999999875035681699981489722699871699999999874227652067885799999850421012245
Q gi|254780450|r 493 TEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 493 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~ 572 (803)
T Consensus 215 ~~li~~~~~~l~~~~~~-~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NA--ikys~~g~~I~I~l~~---------- 281 (355)
T PRK10755 215 EDVILPSYDELSTMLEQ-RQQTLLLPESAADITVQGDATLLRLLLRNLVENA--HRYSPEGSNITIKLQE---------- 281 (355)
T ss_pred HHHHHHHHHHHHHHHHH-CCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE----------
T ss_conf 99999999999999997-5995999658877189968999999999999989--9748999769999997----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC-CCCEEEEEEECC
Q ss_conf 5667889789999997886688445420232222101357765303889999985167549999618-894299999437
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEV-GKGTIFRIFLPR 651 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~-g~Gt~F~i~lP~ 651 (803)
T Consensus 282 -----~~-~~~i~V~D~G~GI~~e~~~~iFerFyR~d~~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~ggGt~~~v~LPk 355 (355)
T PRK10755 282 -----DG-GAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLKK 355 (355)
T ss_pred -----CC-CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf -----79-889999987999897999885588613899999875899999999999199899998798987899999479