HHsearch alignment for GI: 254780450 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=98.15 E-value=2.7e-05 Score=55.29 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999999852596199992999689764679864299967804563218880882048999999862002671488899
Q gi|254780450|r 158 ELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLD 237 (803)
Q Consensus 158 ~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (803)
T Consensus 78 ~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~--i~~~~~~~~~~~~l~--~~--~~~~~~~--- 148 (513)
T PRK10820 78 EHLALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHT--AAQLINGFNFLRWLE--SE--PQDSHNE--- 148 (513)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--HHHHCCCCCHHHHHH--CC--CCCCCCE---
T ss_conf 88899999973899789985998199763999998498968877979--999718756999986--28--9876635---
Q ss_pred EEEEECCEEEEEEEEEEEEECCCCC--EEEEEEEEEEHHHH
Q ss_conf 9980489799999955676538885--54799999860789
Q gi|254780450|r 238 LRRIDNGHGIPVKIVHHILASCDGK--PGESRTVVVSRKNC 276 (803)
Q Consensus 238 ~~~~~~g~~~~v~~~~~~~~~~~G~--~~~~~~~~~Dit~~ 276 (803)
T Consensus 149 -~~~~~~~~~~~~~~pi~~~~~~~~~~~~GaV~~lk~~~~~ 188 (513)
T PRK10820 149 -HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 (513)
T ss_pred -EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHH
T ss_conf -9987696789997678752778860366689882468999