HHsearch alignment for GI: 254780450 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.74 E-value=3.1e-16 Score=132.38 Aligned_cols=119 Identities=23% Similarity=0.292 Sum_probs=107.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHCCCC
Q ss_conf 56999769889999999999988-98999-989989998999865999548998587889---88899999999868998
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPE---MDGPTLLRELRKTYPSL 756 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~---m~G~~~~~~ir~~~~~~ 756 (803)
T Consensus 4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~--~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~ 81 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 889998897999999999981599968999879999999998623--989899826779998878999999999858998
Q ss_pred CEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 2999906785899876760579807507979999999999985137
Q gi|254780450|r 757 KFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 757 ~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~ 127 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 0899847787899999985897489987899999999999998799