HHsearch alignment for GI: 254780450 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=100.00 E-value=0 Score=418.41 Aligned_cols=339 Identities=23% Similarity=0.273 Sum_probs=259.1
Q ss_pred HHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 99998346750999850206998315544444548846617986666101111220246666555411233454048873
Q gi|254780450|r 290 FNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQ 369 (803)
Q Consensus 290 l~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 369 (803)
T Consensus 9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~-g~~~~~~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 84 (348)
T PRK11073 9 AGQILNSLINSILLLDDNLAIHYANPAAQQLL-AQSSRKLFGTPLPELLSYFSLN--IELMQESLQAGQGFTDNEVTLV- 84 (348)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHH-CCCHHHHCCCCHHHHHCCCCCC--HHHHHHHHHCCCCCCCCEEEEE-
T ss_conf 99999866079649989797012839999997-8598998599689984665301--8999999973897413239999-
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88506899998730456677613899999850232112210123444444687630342566415899999999998507
Q gi|254780450|r 370 DENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS 449 (803)
Q Consensus 370 ~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~ 449 (803)
T Consensus 85 ~~~~~~~~~~~~~~~~~-----~~~l~~~~di~~~k~l~~e~~~~~~~~~~~e~~~~iaHelrnPL~~I~g~~~ll~~~~ 159 (348)
T PRK11073 85 IDGRSHILSLTAQRLPE-----GMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKAL 159 (348)
T ss_pred ECCEEEEEEEEEEECCC-----CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 89969999999998258-----6899999962799999999999999999999998401874785799999999997417
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEC
Q ss_conf 99847888899999998888764300454212005843585346789999999987503568169998148972269987
Q gi|254780450|r 450 RSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTD 529 (803)
Q Consensus 450 ~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D 529 (803)
T Consensus 160 -~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~i~~d 234 (348)
T PRK11073 160 -PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGTHI--TESIHKVAERVVQLVSLELPD--NVRLIRDYDPSLPELAHD 234 (348)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCEEEEC
T ss_conf -998999999999999999999999986441268877--547999999999999985657--809999607888726446
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 16999999998742276520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 530 LSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 530 ~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
T Consensus 235 ~~~l~qVl~NLl~NAik~~-~~~~g~i~i~~~~~~~~~-----i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf~ttk 308 (348)
T PRK11073 235 PDQIEQVLLNIVRNALQAL-GPEGGEITLRTRTAFQLT-----LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCC-----CCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 8788999999999999983-669977999996433322-----1453233048999999088789899997377836799
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 357765303889999985167549999618894299999437
Q gi|254780450|r 610 KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 610 ~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
T Consensus 309 ~--~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 309 E--GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred C--CCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf 8--98177899999999986998999982891-999999963