HHsearch alignment for GI: 254780450 and conserved domain: PRK11173
>PRK11173 two-component response regulator; Provisional.
Probab=99.87 E-value=5e-21 Score=166.15 Aligned_cols=116 Identities=28% Similarity=0.486 Sum_probs=102.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
T Consensus 4 ~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~--~~DlvilDi~lp~~~G~~l~~~iR~~-~~~piI~l 80 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQ-ANVALMFL 80 (237)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHC-CCCCEEEE
T ss_conf 9899995989999999999998899999989999999998638--99899993899988730355566516-88478999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 81 ta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~ 119 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 432577889999976976788789887999999999986