HHsearch alignment for GI: 254780450 and conserved domain: PRK11517

>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.89  E-value=1e-21  Score=171.06  Aligned_cols=116  Identities=25%  Similarity=0.375  Sum_probs=104.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r  683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS  762 (803)
Q Consensus       683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t  762 (803)
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~--~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lt   78 (223)
T PRK11517          2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT   78 (223)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE
T ss_conf             899996989999999999998899999989999999998528--99999984999873689999999856-886489995


Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf             678589987676057980750797999999999998513
Q gi|254780450|r  763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS  801 (803)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~  801 (803)
T Consensus        79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr  117 (223)
T PRK11517         79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ  117 (223)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             655657899999839877620897789999999999641