HHsearch alignment for GI: 254780450 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.89 E-value=1e-21 Score=171.06 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=104.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~--~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lt 78 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE
T ss_conf 899996989999999999998899999989999999998528--99999984999873689999999856-886489995
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 655657899999839877620897789999999999641