HHsearch alignment for GI: 254780450 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.35 E-value=3.8e-11 Score=96.46 Aligned_cols=121 Identities=8% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHCCCCEEEEEE---ECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 999834675099985---020699831554444454884661798666610111-1220246666555411233454048
Q gi|254780450|r 291 NRFFNNIPMAIASID---KKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKN-EKRKIIAALYDANDQKSDISPIDSP 366 (803)
Q Consensus 291 ~~i~e~~p~~I~~~d---~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~ 366 (803)
T Consensus 161 ~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit-Gy~~~e~~g~~~r~lq~~~~~~e~~~~-~~~ai~~~-~~~~ve~r 237 (674)
T PRK13558 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDIT-GYSPDEVVGANHRFLQGPKTNEDRVAE-FWTAITED-HDTQVVLR 237 (674)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC-CCCHHHHCCCCHHHHCCCCCCHHHHHH-HHHHHHCC-CCCEEEEE
T ss_conf 7566405725998468888874388601236531-898178649740121068888057999-99997558-86334533
Q ss_pred EECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 873885068999987304566776138999998502321122101234
Q gi|254780450|r 367 HPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQT 414 (803)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa 414 (803)
T Consensus 238 ~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~ 285 (674)
T PRK13558 238 NYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGE 285 (674)
T ss_pred EECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 314688378741245521057885899986214477889999999986