HHsearch alignment for GI: 254780450 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.35  E-value=3.8e-11  Score=96.46  Aligned_cols=121  Identities=8%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             HHHHHCCCCEEEEEE---ECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             999834675099985---020699831554444454884661798666610111-1220246666555411233454048
Q gi|254780450|r  291 NRFFNNIPMAIASID---KKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKN-EKRKIIAALYDANDQKSDISPIDSP  366 (803)
Q Consensus       291 ~~i~e~~p~~I~~~d---~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~  366 (803)
T Consensus       161 ~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit-Gy~~~e~~g~~~r~lq~~~~~~e~~~~-~~~ai~~~-~~~~ve~r  237 (674)
T PRK13558        161 EQALDEAPIGITISDATDPEEPIIYINDSFEDIT-GYSPDEVVGANHRFLQGPKTNEDRVAE-FWTAITED-HDTQVVLR  237 (674)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC-CCCHHHHCCCCHHHHCCCCCCHHHHHH-HHHHHHCC-CCCEEEEE
T ss_conf             7566405725998468888874388601236531-898178649740121068888057999-99997558-86334533


Q ss_pred             EECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             873885068999987304566776138999998502321122101234
Q gi|254780450|r  367 HPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQT  414 (803)
Q Consensus       367 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa  414 (803)
T Consensus       238 ~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~  285 (674)
T PRK13558        238 NYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGE  285 (674)
T ss_pred             EECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             314688378741245521057885899986214477889999999986