HHsearch alignment for GI: 254780450 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00 E-value=0 Score=685.55 Aligned_cols=387 Identities=32% Similarity=0.484 Sum_probs=343.9
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888764300454
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLA 478 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd 478 (803)
T Consensus 432 r~etER~~LE~qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~ 511 (831)
T PRK13837 432 RLETERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLRRHSRARRHIDEIISSGDRARLIIDQILT 511 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999999999999999899998700899999999998620699847789999999999999999999999
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 21200584358534678999999998750356816999814897226998716999999998742276520678857999
Q gi|254780450|r 479 FSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTV 558 (803)
Q Consensus 479 ~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i 558 (803)
T Consensus 512 FSR~~~~~~~~vdl~~lv~e~~~llr~~l~~--~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM--~~gG~l~I 587 (831)
T PRK13837 512 FGRKGERRTKPFSLSELVTEIAPLLRVSLPP--TVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAM--DENGRVDI 587 (831)
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 8589999771774999999999999987589--8699997189885388879999999999999999976--79986999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99850421012245566788978999999788668844542023222210135776530388999998516754999961
Q gi|254780450|r 559 RTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESE 638 (803)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~ 638 (803)
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK~--~GTGLGLAvV~gIV~~hgG~I~V~S~ 665 (831)
T PRK13837 588 RLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTRA--RGTGLGLATVHGIVSAHAGYIDVQST 665 (831)
T ss_pred EEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 9855533632321157789989899999867999898999660489867889--98874699999999986986999726
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 88942999994375766443333332222354444533347875699976988999999999998898999989989998
Q gi|254780450|r 639 VGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL 718 (803)
Q Consensus 639 ~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal 718 (803)
T Consensus 666 pG~GTtF~v~LP~~~~~~~~~-----~~~-~~~---~~~~g~ge~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al 736 (831)
T PRK13837 666 VGRGTRFDVYLPPSSKVPVAP-----DAF-GPL---PAPRGNGETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAI 736 (831)
T ss_pred CCCCEEEEEEEECCCCCCCCC-----CCC-CCC---CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 999718999831798877787-----767-777---88899997799985988999999999996799688868999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 99986599954899858788988899999999868998299990678589987676057980750797999999999998
Q gi|254780450|r 719 KVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 719 ~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
T Consensus 737 ~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVi-lsg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~a 814 (831)
T PRK13837 737 AWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPII-LAGSSLKMAAREALATAIAEILPKPISSRTLAYALRTA 814 (831)
T ss_pred HHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEE-EECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9998389985399988-999998799999998618997499-97688144331102226670650999999999999999
Q ss_pred HCCC
Q ss_conf 5137
Q gi|254780450|r 799 LQSD 802 (803)
Q Consensus 799 L~~~ 802 (803)
T Consensus 815 L~~~ 818 (831)
T PRK13837 815 LATA 818 (831)
T ss_pred HHCC
T ss_conf 8488