HHsearch alignment for GI: 254780450 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=99.84 E-value=1.5e-19 Score=155.71 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=100.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 3 ~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~--~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt 79 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSE--TVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIIS 79 (241)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 899996989999999999987799999989999999998659--999999969998766134555640369-97369997
Q ss_pred CC-CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67-858998767605798075079799999999999851
Q gi|254780450|r 763 GY-AEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~-~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr 118 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 267878999999876998899777677799999999987