HHsearch alignment for GI: 254780450 and conserved domain: TIGR01924

>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.00  E-value=0.016  Score=35.78  Aligned_cols=101  Identities=22%  Similarity=0.365  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHHCCCCC-CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf             1699999999874227-65206788-579999985042101224556678897899999978866884454202322221
Q gi|254780450|r  530 LSQFEQVLVNLCVNAH-HAIMLKES-GSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT  607 (803)
Q Consensus       530 ~~~l~qvl~NLl~NA~-~A~~~~~~-G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t  607 (803)
T Consensus        41 IED~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iy---------------EDklev~vsD~G~SFD~d~~k~~lGPyd~  105 (161)
T TIGR01924        41 IEDLKIAVSEACTNAVKHAYKEEENVGEISIEFEIY---------------EDKLEVIVSDEGDSFDLDTKKQELGPYDK  105 (161)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEE---------------EEEEEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf             520677665553033112230898367899888788---------------75789998207864111002532589795


Q ss_pred             CCCC---CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf             0135---776530388999998516754999961889429999943
Q gi|254780450|r  608 TKKV---GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP  650 (803)
Q Consensus       608 tk~~---g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP  650 (803)
T Consensus       106 ~~~i~~L~eG-GLGLFLietL---MD-~V~~~~~sGV~v~MTKYl~  146 (161)
T TIGR01924       106 SEDIDQLREG-GLGLFLIETL---MD-EVKVYEDSGVTVAMTKYLN  146 (161)
T ss_pred             CCCHHHHHCC-CCHHHHHHCC---CC-EEEEEECCCEEEEEEEECC
T ss_conf             7875432017-7136645103---76-1699832860898864226