HHsearch alignment for GI: 254780450 and conserved domain: TIGR01924
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.00 E-value=0.016 Score=35.78 Aligned_cols=101 Identities=22% Similarity=0.365 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHCCCCC-CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 1699999999874227-65206788-579999985042101224556678897899999978866884454202322221
Q gi|254780450|r 530 LSQFEQVLVNLCVNAH-HAIMLKES-GSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT 607 (803)
Q Consensus 530 ~~~l~qvl~NLl~NA~-~A~~~~~~-G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t 607 (803)
T Consensus 41 IED~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iy---------------EDklev~vsD~G~SFD~d~~k~~lGPyd~ 105 (161)
T TIGR01924 41 IEDLKIAVSEACTNAVKHAYKEEENVGEISIEFEIY---------------EDKLEVIVSDEGDSFDLDTKKQELGPYDK 105 (161)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEE---------------EEEEEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf 520677665553033112230898367899888788---------------75789998207864111002532589795
Q ss_pred CCCC---CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 0135---776530388999998516754999961889429999943
Q gi|254780450|r 608 TKKV---GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 608 tk~~---g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
T Consensus 106 ~~~i~~L~eG-GLGLFLietL---MD-~V~~~~~sGV~v~MTKYl~ 146 (161)
T TIGR01924 106 SEDIDQLREG-GLGLFLIETL---MD-EVKVYEDSGVTVAMTKYLN 146 (161)
T ss_pred CCCHHHHHCC-CCHHHHHHCC---CC-EEEEEECCCEEEEEEEECC
T ss_conf 7875432017-7136645103---76-1699832860898864226