HHsearch alignment for GI: 254780450 and conserved domain: TIGR01925
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.33 E-value=1.2e-06 Score=64.91 Aligned_cols=97 Identities=26% Similarity=0.361 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 699999999874227-6520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 531 SQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 531 ~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~---------------d~~~~~~v~D~G~GI--~~lE~A~~PLyTsk 100 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIE---------------DDEVSITVRDEGIGI--ENLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEE---------------CCEEEEEEEECCCCH--HHHHHHCCCCCCCC
T ss_conf 5554333223212053145637997789999960---------------548999986467572--33785326645799
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 357765303889999985167549999618894299999
Q gi|254780450|r 610 KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 610 ~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
T Consensus 101 PeLERSGMGFTvME~----FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 101 PELERSGMGFTVMES----FMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred CCCCCCCCCEEEECC----CCCCEEEEECCCCCCEEEEE
T ss_conf 872206786012111----24512686238998468875