HHsearch alignment for GI: 254780450 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.39  E-value=1.8e-11  Score=98.82  Aligned_cols=357  Identities=14%  Similarity=0.104  Sum_probs=193.7

Q ss_pred             HHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC-EEEEEEECCEE
Q ss_conf             98524980999959993898106688670999567315611000278761678999999983243232-03898601000
Q gi|254780450|r   32 FMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGS-EEFRLMQSLNN  110 (803)
Q Consensus        32 lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~e~~~~~~~~~  110 (803)
T Consensus         1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~-~es~~---k~~~~l~~a~~~g~~a~r~~~~~~~   76 (453)
T TIGR02040         1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVT-EESKE---KVEALLSEAKRTGVGAVRVELNRFV   76 (453)
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCC-HHHHH---HHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf             9776477035551787077644288552414130245884444135-77899---9999997146888857777665411


Q ss_pred             ECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE---CHHHHH--------H---HHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             0489867999999999982378806999999978---338899--------9---9999999999999985259619999
Q gi|254780450|r  111 YSQNSEPHWYRLKARVLPISLHKEKLLYAWRITD---ITSERK--------D---QEKFFRELQNAIDYLDHSPVGFMSA  176 (803)
Q Consensus       111 ~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~D---IT~~k~--------~---ee~l~~~~~~~~~~le~a~~gi~~~  176 (803)
T Consensus        77 -~P~~~ElP~~F~~~~L~~sdGk~~~vLa~G-rdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv  154 (453)
T TIGR02040        77 -LPSDLELPMEFVLVRLGASDGKDEGVLALG-RDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLV  154 (453)
T ss_pred             -CCCCCCCCEEEEEECCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             -799972440346761678788887358884-652478999999999987888879998667544433541148867998


Q ss_pred             C-CCCCEEEEHHHHHHHCCCCHH---HHCCCCCCHHHHCCCHHHHHHHHHHHHH-CCCCEEEEEEEEEEEECCEEEEEEE
Q ss_conf             2-999689764679864299967---8045632188808820489999998620-0267148889999804897999999
Q gi|254780450|r  177 D-HQGKILYINATLAEWIGIDLT---TFTSKSISIGDITAGEGLALIQAIRTEP-SHQKITTLDLDLRRIDNGHGIPVKI  251 (803)
Q Consensus       177 D-~~g~i~~~N~~~~~llG~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~~v~~  251 (803)
T Consensus       155 ~~st~rileaN~~A~~lLg~~~~~rd~LvG~~--~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~~~----~v  228 (453)
T TIGR02040       155 DVSTGRILEANSAAAALLGAEGQRRDSLVGRE--FPQELEEREREELELLLREVRATGKAAEVRILLAESRKEL----LV  228 (453)
T ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCH--HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCE----EE
T ss_conf             53653477867999998502677501231113--4314664543689999986430157787178745788731----78


Q ss_pred             EEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCC
Q ss_conf             55676538885547999998607899999999999999999983467509998502069983155444445488466179
Q gi|254780450|r  252 VHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTS  331 (803)
Q Consensus       252 ~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g  331 (803)
T Consensus       229 ~~s~~r-~~~~~~fL~-~l~~~~~~~~~~~~~-s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G  305 (453)
T TIGR02040       229 VVSLFR-QDSESLFLV-RLSPAGASAAVGDVL-SENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAVRG  305 (453)
T ss_pred             EEEEEE-CCCCCHHHE-EECCCCCCCCCCCCC-CCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCC
T ss_conf             877640-236641011-303112446777766-74278999997429879997788732888899998987177545313


Q ss_pred             CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf             8666610111122024666655541123345404887388506899998730456677613899999850232112
Q gi|254780450|r  332 NDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKAL  407 (803)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~  407 (803)
T Consensus       306 ~~L~~wL~R~~vD--L~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~vEISAa~~~~~~~P--~lvl~iRdisRrl~~  377 (453)
T TIGR02040       306 RTLDRWLGRSGVD--LAVLLSNLRRTGQVRLYATTLKGELGAETEVEISAAAVDQGERP--KLVLVIRDISRRLTM  377 (453)
T ss_pred             CCHHHHHCCCCHH--HHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC--EEEEEEECHHHHCCC
T ss_conf             3235541677533--89877624216853676311002435303687787874389983--699987012343024