HHsearch alignment for GI: 254780450 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.39 E-value=1.8e-11 Score=98.82 Aligned_cols=357 Identities=14% Similarity=0.104 Sum_probs=193.7
Q ss_pred HHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC-EEEEEEECCEE
Q ss_conf 98524980999959993898106688670999567315611000278761678999999983243232-03898601000
Q gi|254780450|r 32 FMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGS-EEFRLMQSLNN 110 (803)
Q Consensus 32 lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~e~~~~~~~~~ 110 (803)
T Consensus 1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~-~es~~---k~~~~l~~a~~~g~~a~r~~~~~~~ 76 (453)
T TIGR02040 1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVT-EESKE---KVEALLSEAKRTGVGAVRVELNRFV 76 (453)
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCC-HHHHH---HHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 9776477035551787077644288552414130245884444135-77899---9999997146888857777665411
Q ss_pred ECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE---CHHHHH--------H---HHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 0489867999999999982378806999999978---338899--------9---9999999999999985259619999
Q gi|254780450|r 111 YSQNSEPHWYRLKARVLPISLHKEKLLYAWRITD---ITSERK--------D---QEKFFRELQNAIDYLDHSPVGFMSA 176 (803)
Q Consensus 111 ~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~D---IT~~k~--------~---ee~l~~~~~~~~~~le~a~~gi~~~ 176 (803)
T Consensus 77 -~P~~~ElP~~F~~~~L~~sdGk~~~vLa~G-rdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv 154 (453)
T TIGR02040 77 -LPSDLELPMEFVLVRLGASDGKDEGVLALG-RDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLV 154 (453)
T ss_pred -CCCCCCCCEEEEEECCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf -799972440346761678788887358884-652478999999999987888879998667544433541148867998
Q ss_pred C-CCCCEEEEHHHHHHHCCCCHH---HHCCCCCCHHHHCCCHHHHHHHHHHHHH-CCCCEEEEEEEEEEEECCEEEEEEE
Q ss_conf 2-999689764679864299967---8045632188808820489999998620-0267148889999804897999999
Q gi|254780450|r 177 D-HQGKILYINATLAEWIGIDLT---TFTSKSISIGDITAGEGLALIQAIRTEP-SHQKITTLDLDLRRIDNGHGIPVKI 251 (803)
Q Consensus 177 D-~~g~i~~~N~~~~~llG~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~~v~~ 251 (803)
T Consensus 155 ~~st~rileaN~~A~~lLg~~~~~rd~LvG~~--~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~~~----~v 228 (453)
T TIGR02040 155 DVSTGRILEANSAAAALLGAEGQRRDSLVGRE--FPQELEEREREELELLLREVRATGKAAEVRILLAESRKEL----LV 228 (453)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCH--HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCE----EE
T ss_conf 53653477867999998502677501231113--4314664543689999986430157787178745788731----78
Q ss_pred EEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCC
Q ss_conf 55676538885547999998607899999999999999999983467509998502069983155444445488466179
Q gi|254780450|r 252 VHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTS 331 (803)
Q Consensus 252 ~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g 331 (803)
T Consensus 229 ~~s~~r-~~~~~~fL~-~l~~~~~~~~~~~~~-s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G 305 (453)
T TIGR02040 229 VVSLFR-QDSESLFLV-RLSPAGASAAVGDVL-SENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAVRG 305 (453)
T ss_pred EEEEEE-CCCCCHHHE-EECCCCCCCCCCCCC-CCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCC
T ss_conf 877640-236641011-303112446777766-74278999997429879997788732888899998987177545313
Q ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 8666610111122024666655541123345404887388506899998730456677613899999850232112
Q gi|254780450|r 332 NDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKAL 407 (803)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~ 407 (803)
T Consensus 306 ~~L~~wL~R~~vD--L~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~vEISAa~~~~~~~P--~lvl~iRdisRrl~~ 377 (453)
T TIGR02040 306 RTLDRWLGRSGVD--LAVLLSNLRRTGQVRLYATTLKGELGAETEVEISAAAVDQGERP--KLVLVIRDISRRLTM 377 (453)
T ss_pred CCHHHHHCCCCHH--HHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC--EEEEEEECHHHHCCC
T ss_conf 3235541677533--89877624216853676311002435303687787874389983--699987012343024