HHsearch alignment for GI: 254780450 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00 E-value=0 Score=368.06 Aligned_cols=463 Identities=20% Similarity=0.252 Sum_probs=352.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999985259619999299968976467986429996780456321888--0882048999999862002671488899
Q gi|254780450|r 160 QNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGD--ITAGEGLALIQAIRTEPSHQKITTLDLD 237 (803)
Q Consensus 160 ~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (803)
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTP---peVYQaLWg~la~qkPW~G~L- 79 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTP---PEVYQALWGSLAEQKPWAGKL- 79 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCCCCCE-
T ss_conf 5688866228803643101456999956632155865621112554012685887---179999998863058986510-
Q ss_pred EEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCC
Q ss_conf 99804897999999556765388855479999986078999999999999999999834675099985020699831554
Q gi|254780450|r 238 LRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHF 317 (803)
Q Consensus 238 ~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~ 317 (803)
T Consensus 80 lNRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~y 159 (496)
T TIGR02938 80 LNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEY 159 (496)
T ss_pred ECCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHH
T ss_conf 00011653002220202000146881587325454357889988897646789999878654100056998688167768
Q ss_pred CCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEE-EEEEEEEEECCCCC--------
Q ss_conf 444454884661798666610111122024666655541123345404887388506-89999873045667--------
Q gi|254780450|r 318 LKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRY-FRFYISATLDRSTE-------- 388 (803)
Q Consensus 318 ~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~-~~~~~~~~~~~~~~-------- 388 (803)
T Consensus 160 k~La~DL-~v~epa~~~l~lLre~~~e~~~~~----~~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~ 234 (496)
T TIGR02938 160 KKLASDL-KVEEPAELLLKLLREELAEDLEEL----ENQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA 234 (496)
T ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHH----CCCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf 8787421-414417999998508765278652----02110101540354168878850102023235311364011561
Q ss_pred -CCCEEEEEEEEECCCCCCCCCC---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCHH-
Q ss_conf -7613899999850232112210---------12344444468763034256641589999999999850--7998478-
Q gi|254780450|r 389 -APEEQAILYTVEITEQKALEAR---------MAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQ--SRSSDAS- 455 (803)
Q Consensus 389 -~~~~~~i~~~~DITerk~~E~~---------L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~--~~~~~~~- 455 (803)
T Consensus 235 ~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~ 314 (496)
T TIGR02938 235 AAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRLQGPLNLISAAISVLERRLGDDAGNDAV 314 (496)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 68998305663647888999999999998999989988888766688888885287107889999863205832379799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HHHHCCCCCEEEEEECCCCCEEEEECHHHHH
Q ss_conf 888999999988887643004542120058435853467899999999-8750356816999814897226998716999
Q gi|254780450|r 456 FADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMI-QKLISEPPQVKLTVDYERDLWGVKTDLSQFE 534 (803)
Q Consensus 456 ~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~ 534 (803)
T Consensus 315 ~~~lqqa~~ag~e~~e~L~~~IP~s~~e~~~--pVNlN~~lrdvi~l~T~rLLA~G--IvVdW~Pa~~LP~~~G~e~~lR 390 (496)
T TIGR02938 315 AALLQQALAAGREALEALEKVIPQSDAEAVV--PVNLNQVLRDVITLLTERLLAAG--IVVDWQPAAVLPAVLGSESRLR 390 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCC--CEECCCCCCCCCHHHCCCHHHH
T ss_conf 9999999886399999750578877244546--64277899999986105575575--4151656101622207852578
Q ss_pred HHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC-
Q ss_conf 999998742276520678--85799999850421012245566788978999999788668844542023222210135-
Q gi|254780450|r 535 QVLVNLCVNAHHAIMLKE--SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV- 611 (803)
Q Consensus 535 qvl~NLl~NA~~A~~~~~--~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~- 611 (803)
T Consensus 391 slfK~LvdNAIeaM~~~~~~RREL~i---------------~t~~~~~li~~~i~DsGPGIP~dlr~kvFEPFFttK~~~ 455 (496)
T TIGR02938 391 SLFKALVDNAIEAMAQKGVKRRELSI---------------LTAVEDDLIRVEIEDSGPGIPADLRLKVFEPFFTTKASS 455 (496)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHH---------------HHHHCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 99999999999985307841023101---------------022308568999973587987244225236732268887
Q ss_pred -CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf -776530388999998516754999961889429999943
Q gi|254780450|r 612 -GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 612 -g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
T Consensus 456 Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~ 495 (496)
T TIGR02938 456 GRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE 495 (496)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf 7842334626889997504987973688877735777623