HHsearch alignment for GI: 254780450 and conserved domain: cd00075
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins.
Probab=99.88 E-value=3.6e-22 Score=174.15 Aligned_cols=99 Identities=42% Similarity=0.640 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCC--
Q ss_conf 99999998742276520678--85799999850421012245566788978999999788668844542023222210--
Q gi|254780450|r 533 FEQVLVNLCVNAHHAIMLKE--SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTT-- 608 (803)
Q Consensus 533 l~qvl~NLl~NA~~A~~~~~--~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~tt-- 608 (803)
T Consensus 1 l~~vl~nLl~NA---ik~~~~~~~~I~i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 62 (103)
T cd00075 1 LQQVLLNLLSNA---IKHTPEGGGRITISVER---------------DGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR 62 (103)
T ss_pred CHHHHHHHHHHH---HHHCCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf 969999999999---98678999489999998---------------399999999977994088999760697501788
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 13577653038899999851675499996188942999994
Q gi|254780450|r 609 KKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 609 k~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
T Consensus 63 ~~~~~g~GlGL~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~l 103 (103)
T cd00075 63 SRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 87789865059999999998899899996599919999989