HHsearch alignment for GI: 254780450 and conserved domain: cd00082
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.92 E-value=1.8e-09 Score=84.63 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4468763034256641589999999999850799847888899999998888764300454212
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSR 481 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr 481 (803)
T Consensus 2 ~~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~ 65 (65)
T cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3599999987298704888886014898856688699999999999999999999999998609