HHsearch alignment for GI: 254780450 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.92 E-value=1.1e-23 Score=184.90 Aligned_cols=113 Identities=35% Similarity=0.619 Sum_probs=105.2
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99769889999999999988989999899899989998659995489985878898889999999986899829999067
Q gi|254780450|r 685 LLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 685 LvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~--~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9892729999999999998899999989999999998757--99999977999898726999999985899959999787
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 85899876760579807507979999999999985
Q gi|254780450|r 765 AEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 765 ~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
T Consensus 79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 89999999997689789969899999999999869