HHsearch alignment for GI: 254780450 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.39 E-value=2.8e-12 Score=104.49 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ 106 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 106 (803)
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 75 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESR-----GG 75 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-----EE
T ss_conf 9799999834246199989999999916533225863667437520124575343999999999998199768-----87
Q ss_pred CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 100004898679999999999823788069999999783
Q gi|254780450|r 107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDI 145 (803)
Q Consensus 107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DI 145 (803)
T Consensus 76 e~~~~~~dG~~~~~~~~~~pi~d~~--g~~g~v~i~rDI 112 (112)
T pfam00989 76 EVSFRVPDGRPRHVEVRASPVRDAG--GEIGFLGVLRDI 112 (112)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCC--CCEEEEEEEECC
T ss_conf 7652879998999999999999199--999999999849