HHsearch alignment for GI: 254780450 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.39  E-value=2.8e-12  Score=104.49  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r   27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ  106 (803)
Q Consensus        27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~  106 (803)
T Consensus         1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   75 (112)
T pfam00989         1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESR-----GG   75 (112)
T ss_pred             CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-----EE
T ss_conf             9799999834246199989999999916533225863667437520124575343999999999998199768-----87


Q ss_pred             CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf             100004898679999999999823788069999999783
Q gi|254780450|r  107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDI  145 (803)
Q Consensus       107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DI  145 (803)
T Consensus        76 e~~~~~~dG~~~~~~~~~~pi~d~~--g~~g~v~i~rDI  112 (112)
T pfam00989        76 EVSFRVPDGRPRHVEVRASPVRDAG--GEIGFLGVLRDI  112 (112)
T ss_pred             EEEEECCCCCEEEEEEEEEEEECCC--CCEEEEEEEECC
T ss_conf             7652879998999999999999199--999999999849