HHsearch alignment for GI: 254780450 and conserved domain: pfam06490
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.58 E-value=2.4e-06 Score=62.63 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=82.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~-~~-~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg 76 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALL-SS-RWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLG 76 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH-HC-CCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEEC
T ss_conf 989986888999979999986499649954889889886-37-8852999967852--0999999999648899999987
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 678589987676057980750797999999999998
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
T Consensus 77 ~~~~~~---~~--~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 77 EHDSAA---EL--ANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCCCHH---HC--CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 887521---20--55258707889879999999875