HHsearch alignment for GI: 254780450 and conserved domain: pfam08447
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.65 E-value=3.5e-07 Score=68.57 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred EEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH--CCCCEEEEEEEEEEEECCEEEEEEEEEEEEECC
Q ss_conf 897646798642999678045632188808820489999998620--026714888999980489799999955676538
Q gi|254780450|r 182 ILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEP--SHQKITTLDLDLRRIDNGHGIPVKIVHHILASC 259 (803)
Q Consensus 182 i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~ 259 (803)
T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~-dG~~~wi~~~~~~~~d~ 79 (90)
T pfam08447 1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRK-DGEYRWVEARGRPIRDE 79 (90)
T ss_pred CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCEEEEEEEEEEEECC
T ss_conf 99999899998499901107998899987190568899988788886058740468999815-99399999999999999
Q ss_pred CCCEEEEEEEE
Q ss_conf 88554799999
Q gi|254780450|r 260 DGKPGESRTVV 270 (803)
Q Consensus 260 ~G~~~~~~~~~ 270 (803)
T Consensus 80 ~G~~~~~~Gi~ 90 (90)
T pfam08447 80 NGKPVRVIGVA 90 (90)
T ss_pred CCCEEEEEEEC
T ss_conf 99999999689