HHsearch alignment for GI: 254780450 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.65  E-value=3.5e-07  Score=68.57  Aligned_cols=88  Identities=18%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             EEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH--CCCCEEEEEEEEEEEECCEEEEEEEEEEEEECC
Q ss_conf             897646798642999678045632188808820489999998620--026714888999980489799999955676538
Q gi|254780450|r  182 ILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEP--SHQKITTLDLDLRRIDNGHGIPVKIVHHILASC  259 (803)
Q Consensus       182 i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~  259 (803)
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~-dG~~~wi~~~~~~~~d~   79 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRK-DGEYRWVEARGRPIRDE   79 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCEEEEEEEEEEEECC
T ss_conf             99999899998499901107998899987190568899988788886058740468999815-99399999999999999


Q ss_pred             CCCEEEEEEEE
Q ss_conf             88554799999
Q gi|254780450|r  260 DGKPGESRTVV  270 (803)
Q Consensus       260 ~G~~~~~~~~~  270 (803)
T Consensus        80 ~G~~~~~~Gi~   90 (90)
T pfam08447        80 NGKPVRVIGVA   90 (90)
T ss_pred             CCCEEEEEEEC
T ss_conf             99999999689