HHsearch alignment for GI: 254780450 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.30  E-value=2.7e-11  Score=97.58  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             HHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHH
Q ss_conf             85249809999599938981066886709995673156110
Q gi|254780450|r   33 MDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLES   73 (803)
Q Consensus        33 ld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~   73 (803)
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~   41 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLA   41 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCH
T ss_conf             99857353799499969999347466709898998095121