HHsearch alignment for GI: 254780450 and conserved domain: pfam08670

>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.

Probab=95.40  E-value=0.2  Score=27.96  Aligned_cols=102  Identities=12%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             HHHHCCCEEEEEC--CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEE
Q ss_conf             9852596199992--99968976467986429996780456321888088204899999986200267148889999804
Q gi|254780450|r  165 YLDHSPVGFMSAD--HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRID  242 (803)
Q Consensus       165 ~le~a~~gi~~~D--~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  242 (803)
T Consensus        36 ~L~~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~--lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y~GiRiss  113 (148)
T pfam08670        36 ALWHHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQD--LPSRKTAEESGRKERCSELAKVMQQGFACLYSGVRISS  113 (148)
T ss_pred             HHHCCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHC--CCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             9963997899767998974654149999996688999845--96665168352899999899999818633788168827


Q ss_pred             CCEEEEEE--EEEEEEECCCCCEEEEEEE
Q ss_conf             89799999--9556765388855479999
Q gi|254780450|r  243 NGHGIPVK--IVHHILASCDGKPGESRTV  269 (803)
Q Consensus       243 ~g~~~~v~--~~~~~~~~~~G~~~~~~~~  269 (803)
T Consensus       114 ~Grrf~ie~a~vW~v-~d~~g~~~gqAa~  141 (148)
T pfam08670       114 MGRRFSIEQAVAWKL-LDEDGAYHGQAAM  141 (148)
T ss_pred             CCCEEEECCEEEEEE-ECCCCCEEEEEEE
T ss_conf             998899912799888-8588988999999