HHsearch alignment for GI: 254780450 and conserved domain: smart00086

>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.93  E-value=0.17  Score=28.57  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=20.5

Q ss_pred             CEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCC
Q ss_conf             04887388506899998730456677613899999850232
Q gi|254780450|r  364 DSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQ  404 (803)
Q Consensus       364 e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITer  404 (803)
T Consensus         3 e~r~~~~dG~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte~   43 (43)
T smart00086        3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER   43 (43)
T ss_pred             EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf             99999889999999999999999898999999999717798