HHsearch alignment for GI: 254780450 and conserved domain: smart00086
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.93 E-value=0.17 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=20.5
Q ss_pred CEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCC
Q ss_conf 04887388506899998730456677613899999850232
Q gi|254780450|r 364 DSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQ 404 (803)
Q Consensus 364 e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITer 404 (803)
T Consensus 3 e~r~~~~dG~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte~ 43 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER 43 (43)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 99999889999999999999999898999999999717798