HHsearch alignment for GI: 254780450 and conserved domain: smart00091
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=98.05 E-value=9.1e-06 Score=58.59 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf 99998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r 162 AIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ 220 (803)
Q Consensus 162 ~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (803)
T Consensus 3 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~ 59 (67)
T smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK--SLLELIHPEDREEVQ 59 (67)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHH
T ss_conf 999999655798588699948998859999889099999599--899946998999999