HHsearch alignment for GI: 254780450 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=98.05  E-value=9.1e-06  Score=58.59  Aligned_cols=57  Identities=26%  Similarity=0.383  Sum_probs=28.4

Q ss_pred             HHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf             99998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r  162 AIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ  220 (803)
Q Consensus       162 ~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~  220 (803)
T Consensus         3 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~   59 (67)
T smart00091        3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK--SLLELIHPEDREEVQ   59 (67)
T ss_pred             HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHH
T ss_conf             999999655798588699948998859999889099999599--899946998999999