HHsearch alignment for GI: 254780451 and conserved domain: COG0066
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism].
Probab=99.88 E-value=9.7e-22 Score=177.92 Aligned_cols=164 Identities=25% Similarity=0.397 Sum_probs=112.9
Q ss_pred EEEEEC-CCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEE
Q ss_conf 899965-8857233164565554473788898749886563145653023577766520360122321257776577224
Q gi|254780451|r 668 ILCLLG-DKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTI 746 (896)
Q Consensus 668 vL~~lG-D~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~ 746 (896)
T Consensus 10 ~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~---------PdF~~ 55 (191)
T COG0066 10 RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD---------PDFVL 55 (191)
T ss_pred EEEECCCCCCCCCCCCCH----------HHHCC--CCHHHH-------------HHCCCCCCCCCC---------CCHHH
T ss_conf 597068887760438628----------87453--687466-------------421531010249---------64321
Q ss_pred ECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 53899787379999989981998899946777867307999886676170899976478988850535523223317898
Q gi|254780451|r 747 HYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGI 826 (896)
Q Consensus 747 ~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~ 826 (896)
T Consensus 56 n~~~------------yq---~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~ 120 (191)
T COG0066 56 NVPP------------YQ---GGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEED 120 (191)
T ss_pred CCCC------------CC---CCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCEECCHHH
T ss_conf 5886------------67---86489966887788527789999997592499936299998701565086755518388
Q ss_pred CHHHHCC-CCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC----CHHHHHHHHH
Q ss_conf 9888198-9743899726322589973899998189967999999873899999999909----8368988872
Q gi|254780451|r 827 SWKNLNI-KGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG----GILQAVLRQL 895 (896)
Q Consensus 827 ~~~~L~l-~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G----GiL~yvlr~l 895 (896)
T Consensus 121 ~~~l~~~~~g~-~i~VDL-~----~~----~v~~~~~~~~~f~i-----~~f~~~~L~~GlD~iGlt~~~~~~i 179 (191)
T COG0066 121 VTELFEDVPGD-EVTVDL-E----TG----EVTNPTGGEEPFEI-----DDFRREILLNGLDDIGLTLQHKKEI 179 (191)
T ss_pred HHHHHHHCCCC-EEEEEC-C----CC----EEEECCCCEEECCC-----CHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99998757898-899986-8----89----69817998787259-----9899999985884113599988766