HHsearch alignment for GI: 254780451 and conserved domain: cd01355

>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=94.39  E-value=0.082  Score=32.32  Aligned_cols=65  Identities=25%  Similarity=0.345  Sum_probs=47.5

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC
Q ss_conf             457531046765459998778899988986498758673079701618999999985885777750530205532
Q gi|254780451|r  430 VAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC  504 (896)
Q Consensus       430 VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC  504 (896)
T Consensus       279 ~DlV~lG-cPH~Sl~El~~la~ll------~gr~~~~~~~~~I~-Tsr~v~--a~~~G~~~~lE~aGv~vv~DTC  343 (389)
T cd01355         279 PDLVVLG-CPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTC  343 (389)
T ss_pred             CCEEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCEEEEE-CCHHHH--HHHCCHHHHHHHCCCEEEEEEC
T ss_conf             1089977-9999999999999998------36777899629998-799999--7615889999974998993146