RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
         (896 letters)



>gnl|CDD|31249 COG1048, AcnA, Aconitase A [Energy production and conversion].
          Length = 861

 Score = 1179 bits (3052), Expect = 0.0
 Identities = 531/891 (59%), Positives = 634/891 (71%), Gaps = 31/891 (3%)

Query: 6   NSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQI 65
           +SF  R  L+VGG  Y YY LPK E +G   IS+LP S+K+LLENLLR EDG   T+E I
Sbjct: 1   DSFKARKTLTVGGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHI 55

Query: 66  HAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVP 125
            A  +WL   G  E E+++R +RV+MQDFTGVPAVVDLAAMRDA+V LGGDP  INP+VP
Sbjct: 56  EALARWL-PSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVP 114

Query: 126 VDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQ 185
           VDLVIDHS+ VD  G+ DA  +N +LE++RN ERY+FLKW  K+F NFRVVPPGTGI HQ
Sbjct: 115 VDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174

Query: 186 INLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245
           +NLEYL + VW K      +AYPDT VGTDSHTTMI  LG+LGWGVGGIEAEAAMLG P 
Sbjct: 175 VNLEYLAKVVWAK----PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPW 230

Query: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRAT 305
            ML+PEVVG ++TG L EGVTATDLVLT+T MLRK+GVV KFVEFFG G  S+ LADRAT
Sbjct: 231 YMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRAT 290

Query: 306 IANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFT 365
           IANM PEYGAT GFFP+D  T+DYLRL+GRS  +V LVEAY K QG+W +  D +   + 
Sbjct: 291 IANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAE-YD 349

Query: 366 KKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHL 425
           K ++LDL  V PS+AGP+RP+ R+ LSEV  +F   + E   K                L
Sbjct: 350 KVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLL-------GKEL 402

Query: 426 KHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485
             G V IA+ITSCTNT NP V+I AGLLA+ AV  GLK KPWVKTS APGS+V  EYL +
Sbjct: 403 GDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462

Query: 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISP 545
           AGL+ YLE LGF++VG+GCTTCIGNSG L +EI + I+   LVV  VLSGNRNFEGRI P
Sbjct: 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGP 522

Query: 546 DVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYV 605
            V+ANYL SPPLVVAYALAG +  +L  DP+G D  G PVYL+DIWP   EI   V K V
Sbjct: 523 LVKANYLASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAV 582

Query: 606 TCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICG 665
             ++++K+Y+DVFK    W  IEVPE   Y W   STY+R PP+F+ +     E   I G
Sbjct: 583 KPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGA---EPKPIKG 635

Query: 666 ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTF 725
           AR+L  LGD ITTDHISPAGSI   S A  YL + GV+  DFN +G+RRGNHEVMMRGTF
Sbjct: 636 ARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTF 695

Query: 726 SNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRD 785
           +NIRI N M+  E   GGYTIH PS E   IYDAAM+YK + +PLVV AG  YG GSSRD
Sbjct: 696 ANIRIRNEMVPGE---GGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRD 749

Query: 786 WAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLK 845
           WAAKG RLLGV++VIAESFERIHRSNLIGMGV+P  F  G ++  L + G+E I+I  L+
Sbjct: 750 WAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE 809

Query: 846 TISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
            + P    T+ +   DG  +  P++C IDT +EI + K GGIL  V R L 
Sbjct: 810 NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLL 860


>gnl|CDD|35673 KOG0452, KOG0452, KOG0452, RNA-binding translational regulator IRP
           (aconitase superfamily) [RNA processing and
           modification, Translation, ribosomal structure and
           biogenesis].
          Length = 892

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 453/893 (50%), Positives = 607/893 (67%), Gaps = 26/893 (2%)

Query: 14  LSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLD 73
           L   G  Y Y+ LPK  +       +LP S++VLLE+ +R  D   V K+ +   + W  
Sbjct: 16  LPKPGGVYKYFDLPKLNSR----YDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDW-K 70

Query: 74  NKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHS 133
           N    + EV ++ +RV++QDFTGVPAVVD AAMRDA+  LGGDP+ INPL PVDLVIDHS
Sbjct: 71  NTQKKQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHS 130

Query: 134 LIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQ 193
           + VD++ + DA+ +N++LE++RN+ER+ FLKWG ++F N  +VPPG+GI HQ+NLEYL +
Sbjct: 131 VQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLAR 190

Query: 194 SVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253
            V+      +++ YPD+ VGTDSHTTMI+ LG+LGWGVGGIEAEA MLG PISM+LPEV+
Sbjct: 191 VVF----ESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVI 246

Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEY 313
           G+++TG L   VT+TDLVLTIT+ LR+ GVV KFVEFFG G   + +ADRATIANM PEY
Sbjct: 247 GYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEY 306

Query: 314 GATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE-KVAFTKKMKLDL 372
           GAT GFFPVD  T+ YL+ +GRS  ++D++E Y K   M+R+  D      +T+ ++LDL
Sbjct: 307 GATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDL 366

Query: 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFH 424
           G V PSV+GP+RP  R+++S++ + F + ++            ++ +   ++   G    
Sbjct: 367 GTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAK 426

Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484
           LKHG V IA+ITSCTNT NPSVM+GAGLLA+ AV  GL  KP++KTS +PGS V  +YL 
Sbjct: 427 LKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLS 486

Query: 485 QAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRIS 544
           ++G++ YLE LGF +VG+GC TCIGNSG L + +   I Q  LV AGVLSGNRNFEGR+ 
Sbjct: 487 ESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVH 546

Query: 545 PDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKY 604
           P+  ANYL SPPLVVAYA+AG V  +   +P+G D  G  V+LRDIWP   E+     ++
Sbjct: 547 PNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEH 606

Query: 605 VTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDIC 664
           V   ++K+ Y  +  G+  W  +EVP S+ Y WD KSTY++ PP+FE +++ +P    I 
Sbjct: 607 VIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGPQSIE 666

Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGT 724
            A  L  LGD +TTDHISPAGSI   S AA YL +RG+  +DFN +G+RRGN  VM RGT
Sbjct: 667 DAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGT 726

Query: 725 FSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSR 784
           F+NIR+ N +L + G K   T+H PS EEL ++DAA RYK + +PL++ AG EYG+GSSR
Sbjct: 727 FANIRLVNKLLSKVGPK---TVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSR 783

Query: 785 DWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR-K 843
           DWAAKG  LLGV++VIAES+ERIHRSNL+GMG+IP  F  G     L + G E   I   
Sbjct: 784 DWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLP 843

Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
              + P Q+ T+    +   F C       DT  E+ + KNGGIL  ++R+LS
Sbjct: 844 ENILKPGQDITVTTD-TGKVFVC---TLRFDTEVELTYYKNGGILNYMIRKLS 892


>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain.  Aconitase A
           catalytic domain. This is the major form of the TCA
           cycle enzyme aconitate hydratase, also known as
           aconitase and citrate hydrolyase. It includes bacterial
           and archaeal aconitase A, and the eukaryotic cytosolic
           form of aconitase. This group also includes sequences
           that have been shown to act as an iron-responsive
           element (IRE) binding protein in animals and may have
           the same role in other eukaryotes.
          Length = 404

 Score =  731 bits (1888), Expect = 0.0
 Identities = 290/480 (60%), Positives = 336/480 (70%), Gaps = 76/480 (15%)

Query: 88  RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147
           RV++QDFTGVPAVVDLAAMRDA+  LGGDP+ INPL+PVDLVIDHS+ VD+ G  DA+ +
Sbjct: 1   RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAK 60

Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207
           N  LE++RN ERY FLKWGQK+FKN RVVPPGTGI HQ+NLEYL + V+T  E+G+ +AY
Sbjct: 61  NMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAY 120

Query: 208 PDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTA 267
           PD+ VGTDSHTTMIN LG+LGWGVGGIEAEA MLG PISMLLPEVVG ++TG L+ GVTA
Sbjct: 121 PDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTA 180

Query: 268 TDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327
           TDLVLT+TQMLRK GVV KFVEFFG G   + +ADRATIANMAPEYGATCGFFPVD    
Sbjct: 181 TDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236

Query: 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPES 387
                                                T+ ++LDL  V PSV+GP+RP+ 
Sbjct: 237 -------------------------------------TQVVELDLSTVEPSVSGPKRPQD 259

Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447
           R+ L                                   HG V IA+ITSCTNT NPSVM
Sbjct: 260 RVPL-----------------------------------HGSVVIAAITSCTNTSNPSVM 284

Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507
           + AGLLA+ AV  GLK KP+VKTS APGS+V  +YL  +GL+ YLE LGF +VG+GCTTC
Sbjct: 285 LAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTC 344

Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567
           IGNSG L +E+ E I +  LVVA VLSGNRNFEGRI P V ANYL SPPLVVAYALAG V
Sbjct: 345 IGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404


>gnl|CDD|144063 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
          Length = 464

 Score =  477 bits (1230), Expect = e-135
 Identities = 162/507 (31%), Positives = 227/507 (44%), Gaps = 43/507 (8%)

Query: 59  TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQ 118
           T+ ++ + A V    N+      +  R  RVLMQD T   A + L A    +  + G   
Sbjct: 1   TLYEKILDAHVDDPANERGT-PYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRRVPG--- 56

Query: 119 NINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178
                    +  DH++     G KD +    +    RN+E+Y FL+   K+F      P 
Sbjct: 57  -------TTITCDHNIPTQDGGEKD-LNIAIE----RNKEQYDFLEKNVKAFGVGFWGPG 104

Query: 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEA 238
            TGI HQI LE                    T VGTDSHT     LG L +GVGG EAE 
Sbjct: 105 STGIVHQIGLENGFTLPGL------------TLVGTDSHTPTHGGLGALAFGVGGSEAEH 152

Query: 239 AMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESM 298
            + G P     P+V+G ++TG L  G+TA D++L +   L  +G   K VEFFG G + +
Sbjct: 153 VLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDL 212

Query: 299 VLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID 358
            +  R TI NMA E GAT G FP D  T  YL+ +GR+    +  EA  K + +  +   
Sbjct: 213 SMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLKSDKDA 272

Query: 359 YEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418
                + K +++DL ++ P V GP  P+  + +SEVP        +   KS      Y  
Sbjct: 273 ----QYDKVIEIDLSDIEPHVTGPTTPQDAVPISEVPPDPN-NFLDPVVKSMEKALAYMG 327

Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478
                 LK   V  A I SCTN+    +   A ++      AG   KPWVK +  PGS+ 
Sbjct: 328 LWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKG---AAGKGLKPWVKATVVPGSEQ 384

Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538
                 + GL +  +  GF     GC+ CIG +      I             V S NRN
Sbjct: 385 VKATAERDGLDKIFDEAGFEWRANGCSPCIGMND-RPDIIKGE------KNTCVSSSNRN 437

Query: 539 FEGRISPDVEANYLLSPPLVVAYALAG 565
           FEGR   +   ++L SP +V A A+AG
Sbjct: 438 FEGRQGANGRTHWLASPAMVAAAAIAG 464


>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
           the reversible isomerization of citrate and isocitrate
           as part of the TCA cycle.  Aconitase catalytic domain.
           Aconitase (aconitate hydratase) catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle.  Cis-aconitate is formed as an intermediate
           product during the course of the reaction. In eukaryotes
           two isozymes of aconitase are known to exist: one found
           in the mitochondrial matrix and the other found in the
           cytoplasm. Aconitase, in its active form, contains a
           4Fe-4S  iron-sulfur cluster; three cysteine residues
           have been shown to be ligands of the 4Fe-4S cluster.
           This is the Aconitase core domain, including structural
           domains 1, 2 and 3, which binds the Fe-S cluster. The
           aconitase family also contains the following proteins: -
           Iron-responsive  element binding protein (IRE-BP), a
           cytosolic protein that binds to iron-responsive elements
           (IREs). IREs are stem-loop structures found in  the
           5'UTR of ferritin, and delta aminolevulinic acid
           synthase mRNAs, and in the 3'UTR of  transferrin
           receptor mRNA. IRE-BP also express aconitase activity. -
           3-isopropylmalate dehydratase (isopropylmalate
           isomerase), the enzyme that catalyzes the second step in
           the biosynthesis of leucine. - Homoaconitase
           (homoaconitate hydratase), an enzyme that participates
           in the  alpha-aminoadipate pathway of lysine
           biosynthesis and that converts cis-homoaconitate into
           homoisocitric acid.
          Length = 389

 Score =  277 bits (710), Expect = 9e-75
 Identities = 145/481 (30%), Positives = 206/481 (42%), Gaps = 93/481 (19%)

Query: 88  RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147
           RV++QD TG  A+     +     V             +  V DH++             
Sbjct: 1   RVMLQDATGPMAMKAFEILAALGKVA--------DPSQIACVHDHAV------------- 39

Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207
              LE   N E ++FL +            PG GI HQI +E L              A 
Sbjct: 40  --QLEKPVNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIMVENL--------------AL 82

Query: 208 P-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266
           P D  VG+DSHTT    LG +  G GG +    M G P  +  PEVVG  +TG L  GVT
Sbjct: 83  PGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVT 142

Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326
             D+VL +  ++  +GV+++ VEF+G G  S+ + DR TI NM  E GAT G FP D+ T
Sbjct: 143 GKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202

Query: 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386
           + +L  +GR   +   +      + +  E  +Y++V     +++DL  + P ++GP RP+
Sbjct: 203 LKWLEATGRPLLK--NLWLAFPEELLADEGAEYDQV-----IEIDLSELEPDISGPNRPD 255

Query: 387 SRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSV 446
             +S+SEV                                   +    I SCTN    S 
Sbjct: 256 DAVSVSEVEG-------------------------------TKIDQVLIGSCTNN-RYSD 283

Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506
           M+ A  L + A     K  P V+    PGS++ Y  L + G  E L   G  ++  GC  
Sbjct: 284 MLAAAKLLKGA-----KVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGP 338

Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566
           C+GN   L  +             GV SGNRNF GR+       YL SP L  A A+AG 
Sbjct: 339 CMGNGARLVAD----------GEVGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388

Query: 567 V 567
           +
Sbjct: 389 I 389


>gnl|CDD|29529 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
           major form of the TCA cycle enzyme aconitate hydratase,
           also known as aconitase and citrate hydro-lyase. It
           includes bacterial and archaeal aconitase A, and the
           eukaryotic cytosolic form of aconitase. This group also
           includes sequences that have been shown to act as an
           iron-responsive element (IRE) binding protein in animals
           and may have the same role in other eukaryotes. This is
           the aconitase-like swivel domain, which is believed to
           undergo swivelling conformational change in the enzyme
           mechanism..
          Length = 171

 Score =  273 bits (700), Expect = 1e-73
 Identities = 105/171 (61%), Positives = 129/171 (75%), Gaps = 2/171 (1%)

Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730
           LLGD +TTDHISPAGSI   S A  YL +RGVK +DFN +G+RRGN EVMMRGTF+NIR+
Sbjct: 1   LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60

Query: 731 CNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKG 790
            N ++      GG T H P+ E + IYDAAMRYK + VPLV+ AG EYG+GSSRDWAAKG
Sbjct: 61  RNKLVPGTE--GGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKG 118

Query: 791 TRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINI 841
             LLGV++VIAESFERIHRSNL+GMG++P  F  G +  +L + G+E  +I
Sbjct: 119 PFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDI 169


>gnl|CDD|35674 KOG0453, KOG0453, KOG0453, Aconitase/homoaconitase (aconitase
           superfamily) [Energy production and conversion, Amino
           acid transport and metabolism].
          Length = 778

 Score =  251 bits (643), Expect = 5e-67
 Identities = 215/789 (27%), Positives = 321/789 (40%), Gaps = 131/789 (16%)

Query: 80  SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS 139
           S +  R  RV MQD +   A++   +         G  +     VP  +  DH +     
Sbjct: 83  SYLKLRPDRVAMQDASAQMALLQFMSS--------GLKKV---AVPSTIHCDHLIEAQVG 131

Query: 140 GNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKN 199
           G+KD + R  DL    N+E Y FL+   K +       PG+GI HQI LE          
Sbjct: 132 GDKD-LQRASDL----NKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------- 175

Query: 200 ENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVT 258
               N A+P    +GTDSHT     LG L  GVGG +A   M   P  +  P+V+G ++T
Sbjct: 176 ----NYAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLT 231

Query: 259 GSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCG 318
           G L    +  D++L +  +L  +G     +E+FG G  S+     ATI NM  E GAT  
Sbjct: 232 GQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTS 291

Query: 319 FFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPS 378
            FP +   IDYL+ +GR N                 +   Y+K+     +++DL  + P 
Sbjct: 292 LFPYNERMIDYLQATGR-NEIAREARETLDAILAADKGAHYDKI-----IEIDLSTLEPH 345

Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSC 438
           V GP  P+         S+ V+++ E  +K       +P+           + +  I SC
Sbjct: 346 VNGPFTPDL--------STPVSKLGENSEK-----NGWPI----------KIKVGLIGSC 382

Query: 439 TNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFS 498
           TN+ +   M  A  + + A   GLK K  V     PGS+     + + G+ E LE  G  
Sbjct: 383 TNS-SYEDMSRAADIVKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGI 439

Query: 499 LVGFGCTTCIG--NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSP 555
           ++   C  CIG  +   +KK     I         V S NRNF GR   +     +L SP
Sbjct: 440 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPATHAFLTSP 490

Query: 556 PLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615
            +V A A+AG++  N    P  +           + P   +           +L KK + 
Sbjct: 491 EIVTALAIAGDLSFN----PETDSLTAPDGKAFKLEPPIGD-----------ELPKKGFD 535

Query: 616 DVFKGDSSWWNIEVPESETYM-WDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGD 674
               G  ++       S   +  D  S  ++    F+          D+   +IL  +  
Sbjct: 536 ---PGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFDKWDGK-----DLEDLKILIKVKG 587

Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734
           K TTDHIS AG          +L+ RG  E   N       N E           + NY+
Sbjct: 588 KCTTDHISAAG---------PWLKYRGHLENISNNDLIGAINKENG-----EANCVKNYL 633

Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794
            GE G                + D A  YK   +  VV     YG GSSR+ AA   R L
Sbjct: 634 TGEFGT---------------VPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHL 678

Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQEST 854
           G R++I +SF RIH +NL   G++P  F     +    I+  + ++I+ L   +P +  T
Sbjct: 679 GGRAIITKSFARIHETNLKKQGLLPLTFANPADYD--KIRPADKVSIKGLTRRTPGKPLT 736

Query: 855 LEIHYSDGT 863
           + +   DG 
Sbjct: 737 VVVTKKDGK 745


>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
           isomerization between 2-isopropylmalate and
           3-isopropylmalate.  Aconatase-like catalytic domain of
           3-isopropylmalate dehydratase and related
           uncharacterized proteins. 3-isopropylmalate dehydratase
           catalyzes the isomerization between 2-isopropylmalate
           and 3-isopropylmalate, via the formation of
           2-isopropylmaleate 3-isopropylmalate. IPMI is involved
           in fungal and bacterial leucine biosynthesis and is also
           found in eukaryotes.
          Length = 382

 Score =  172 bits (438), Expect = 5e-43
 Identities = 118/443 (26%), Positives = 167/443 (37%), Gaps = 99/443 (22%)

Query: 128 LVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQIN 187
            V DH++      +  A  + K L     E    F   G              GICH I 
Sbjct: 32  AVFDHNVPTP---DIKAAEQVKTLRKFAKEFGINFFDVG------------RQGICHVI- 75

Query: 188 LEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246
              L +   T          P  T VG DSHT    A G    G+G  +    +    + 
Sbjct: 76  ---LPEKGLTL---------PGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLW 123

Query: 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATI 306
             +PE +   V G L  GVTA D++L I   +  +G   K +EF G   ES+ + +R T+
Sbjct: 124 FRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTL 183

Query: 307 ANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID--YEKVAF 364
            NMA E GA  G    D  T +YL+  G++  +              + D D  Y+KV  
Sbjct: 184 CNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKE------------LKSDEDAEYDKV-- 229

Query: 365 TKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424
              +++D   + P VA P  P++ + +SEV                   E   +      
Sbjct: 230 ---VEIDASELEPQVAWPHSPDNVVPVSEV-------------------EGIKI------ 261

Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484
               D     I SCTN     +   A +L       G K    V+    P SQ  Y+   
Sbjct: 262 ----DQVF--IGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAE 309

Query: 485 QAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543
           + GL+E     G  +   GC  C+G + G L     E           V + NRNF+GR+
Sbjct: 310 KEGLIEIFIEAGAEVRPPGCGACLGGHMGVLAPG--ERC---------VSTSNRNFKGRM 358

Query: 544 -SPDVEANYLLSPPLVVAYALAG 565
            SP     YL SP    A A+ G
Sbjct: 359 GSPGAR-IYLASPATAAASAITG 380


>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle.  Bacterial Aconitase-like catalytic domain.
           Aconitase (aconitate hydratase or citrate hydrolyase)
           catalyzes the reversible isomerization of citrate and
           isocitrate as part of the TCA cycle. Cis-aconitate is
           formed as an intermediate product during the course of
           the reaction. This distinct subfamily is found only in
           bacteria and Archaea. Its exact characteristics are not
           known.
          Length = 380

 Score =  171 bits (436), Expect = 6e-43
 Identities = 139/483 (28%), Positives = 201/483 (41%), Gaps = 111/483 (22%)

Query: 90  LMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLI-VDYSGNKDAV 145
           L QD TG  A +   AM        G  +     V  +L    +DH+ +  D+       
Sbjct: 4   LTQDATGTMAYLQFEAM--------GVDR-----VRTELSVSYVDHNTLQTDF------- 43

Query: 146 TRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENI 205
                     N + +RFL+     +       PG GICHQ++LE                
Sbjct: 44  ---------ENADDHRFLQTVAARY-GIYFSRPGNGICHQVHLE--------------RF 79

Query: 206 AYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEG 264
           A P  T +G+DSHT     LG+L  G GG++   AM G P  + +P+VVG  +TG L   
Sbjct: 80  AVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPW 139

Query: 265 VTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDR 324
           VTA D++L + + L  +G V K  E+ G G  ++ + +RATI NM  E GAT   FP D 
Sbjct: 140 VTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDE 199

Query: 325 GTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRR 384
            T ++L   GR +  V+L             D +Y++      +++DL  + P +A P  
Sbjct: 200 RTREFLAAQGREDDWVELAA---------DADAEYDEE-----IEIDLSELEPLIARPHS 245

Query: 385 PESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNP 444
           P++ + + EV                              +K   VAI    SCTN+   
Sbjct: 246 PDNVVPVREVAG----------------------------IKVDQVAIG---SCTNSSYE 274

Query: 445 SVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504
            +M  A +L       G +  P V    APGS+   E L + G +  L A G  ++   C
Sbjct: 275 DLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILESAC 328

Query: 505 TTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564
             CIG   A            S     V + NRNFEGR     +  YL SP +  A AL 
Sbjct: 329 GPCIGMGQA------PPTGGVS-----VRTFNRNFEGRSGTKDDLVYLASPEVAAAAALT 377

Query: 565 GNV 567
           G +
Sbjct: 378 GVI 380


>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle.  Mitochondrial aconitase A catalytic domain.
           Aconitase (also known as aconitate hydratase and citrate
           hydro-lyase) catalyzes the reversible isomerization of
           citrate and isocitrate as part of the TCA cycle.
           Cis-aconitate is formed as an intermediary product
           during the course of the reaction. In eukaryotes two
           isozymes of aconitase are known to exist: one found in
           the mitochondrial matrix and the other found in the
           cytoplasm. This is the mitochondrial form. The
           mitochondrial product is coded by a nuclear gene. Most
           members of this subfamily are mitochondrial but there
           are some bacterial members.
          Length = 412

 Score =  170 bits (432), Expect = 2e-42
 Identities = 137/488 (28%), Positives = 212/488 (43%), Gaps = 88/488 (18%)

Query: 88  RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147
           RV MQD T   A++   +         G P+     VP  +  DH LI    G +  + R
Sbjct: 1   RVAMQDATAQMALLQFMS--------SGLPK---VAVPSTIHCDH-LIEAQVGGEKDLKR 48

Query: 148 NKDLEYQRNEERYRFL-----KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202
            KD+    N+E Y FL     K+G   +K      PG+GI HQI LE             
Sbjct: 49  AKDI----NKEVYDFLASAGAKYGIGFWK------PGSGIIHQIVLE------------- 85

Query: 203 ENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261
            N A+P    +GTDSHT     LG +  GVGG +A   M G P  +  P+V+G ++TG L
Sbjct: 86  -NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKL 144

Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321
               +  D++L +  +L  +G     VE+FG G +S+      TI NM  E GAT   FP
Sbjct: 145 SGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFP 204

Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381
            +     YL+ +GR+    DL + +     +  E  +Y+++     ++++L  + P + G
Sbjct: 205 YNERMKKYLKATGRAEI-ADLADEFKDDLLVADEGAEYDQL-----IEINLSELEPHING 258

Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441
           P  P+    +S+              K       +P+          D+ +  I SCTN+
Sbjct: 259 PFTPDLATPVSKF-------------KEVAEKNGWPL----------DLRVGLIGSCTNS 295

Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501
            +   M  A  +A+ A+  GLK K     +  PGS+     + + GL++     G  ++ 
Sbjct: 296 -SYEDMGRAASIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLA 352

Query: 502 FGCTTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPL 557
             C  CIG        K E + ++           S NRNF GR   +     ++ SP +
Sbjct: 353 NACGPCIGQWDRKDIKKGEKNTIVT----------SYNRNFTGRNDANPATHAFVASPEI 402

Query: 558 VVAYALAG 565
           V A A+AG
Sbjct: 403 VTAMAIAG 410


>gnl|CDD|30414 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
           acid transport and metabolism].
          Length = 423

 Score =  166 bits (422), Expect = 2e-41
 Identities = 108/416 (25%), Positives = 158/416 (37%), Gaps = 77/416 (18%)

Query: 154 QRNEERYRFLKWGQKSFKNFRVVPPGT-GICHQINLEYLGQSVWTKNENGENIAYP-DTC 211
            +  E+ + L+   K F        G  GI HQ+  E             + +  P  T 
Sbjct: 72  IKAAEQQKELRENAKEFGIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTI 118

Query: 212 VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLV 271
           VG DSHT    A G   +G+G  +    +    +   +P+ +  EV G L  GVTA D++
Sbjct: 119 VGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDII 178

Query: 272 LTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331
           L +   +  +G     +EF G    S+ +  R T+ NMA E GA  G    D  T +YL+
Sbjct: 179 LALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK 238

Query: 332 LSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSL 391
                         +      W+     E   + K ++LD  ++ P VA P  P++ + +
Sbjct: 239 -------------EWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPV 285

Query: 392 SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAG 451
           SEV                   E  P+K          +    I SCTN     +   A 
Sbjct: 286 SEV-------------------EPDPIK----------IDQVFIGSCTNGRIEDLRAAA- 315

Query: 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-N 510
                 +  G K  P V+    PGS+   E   + GL +     GF     GC  C+G +
Sbjct: 316 -----EILKGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMH 370

Query: 511 SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565
            G L     E             + NRNFEGR  SP     YL SP +  A A+ G
Sbjct: 371 PGVLGP--GERC---------ASTSNRNFEGRQGSPGART-YLASPAMAAAAAVEG 414


>gnl|CDD|144335 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members of
           this family usually also match to pfam00330. This domain
           undergoes conformational change in the enzyme mechanism.
          Length = 131

 Score =  159 bits (403), Expect = 5e-39
 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 693 AASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752
              +L  RGV   DF               GT +NI + N +   +G +   T H P+ E
Sbjct: 1   MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILF--DGWRANKTTHLPTGE 58

Query: 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNL 812
                DAA RYK    P++V  G  YG GSSR+ AA   R LG+++VIA+SF RIHR+NL
Sbjct: 59  NPDFVDAAERYKQHGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNL 118

Query: 813 IGMGVIPFAFGKG 825
           I  G++P  F  G
Sbjct: 119 IKNGLLPLTFPNG 131


>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
           proteins of the Aconitase family.  Homoaconitase
           catalytic domain. Homoaconitase and other
           uncharacterized proteins of the Aconitase family.
           Homoaconitase is part of an unusual lysine biosynthesis
           pathway found only in filamentous fungi, in which lysine
           is synthesized via the alpha-aminoadipate pathway. In
           this pathway, homoaconitase catalyzes the conversion of
           cis-homoaconitic acid into homoisocitric acid. The
           reaction mechanism is believed to be similar to that of
           other aconitases.
          Length = 363

 Score =  114 bits (286), Expect = 1e-25
 Identities = 106/396 (26%), Positives = 155/396 (39%), Gaps = 101/396 (25%)

Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235
           P G GI HQI +E             E  A+P T  V +DSH+ M   +G LG  +   +
Sbjct: 64  PAGRGIGHQIMIE-------------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTD 110

Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295
           A A          +P V   E+ G L +GVT  D+++ +  +  K+ V++  +EF GSG 
Sbjct: 111 AAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGL 170

Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355
            S+ +  R TIANM  E+GA  G FP D                                
Sbjct: 171 NSLSVDTRLTIANMTTEWGALSGLFPTD-------------------------------- 198

Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415
                     K + LDL  +SP V+GP                        K S  L E 
Sbjct: 199 ---------AKHLILDLSTLSPYVSGPNS---------------------VKVSTPLKE- 227

Query: 416 YPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK-PWVKTSC 472
                    L+  ++ I  A + SCTN+    +   A ++     + G     P V+   
Sbjct: 228 ---------LEAQNIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYV 278

Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGV 532
           A  S        + G  + L   G + +  GC  CIG    L +   EV         G+
Sbjct: 279 AAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-GEV---------GI 328

Query: 533 LSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567
            + NRNF+GR+ S +  A YL SP +V A A++G +
Sbjct: 329 SATNRNFKGRMGSTEALA-YLASPAVVAASAISGKI 363


>gnl|CDD|29528 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain.
           Aconitase (aconitate hydratase or citrate hydrolyase)
           catalyzes the reversible isomerization of citrate and
           isocitrate as part of the TCA cycle.  Cis-aconitate is
           formed as an intermediate product during the course of
           the reaction. This is the aconitase-like swivel domain,
           which is believed to undergo swivelling conformational
           change in the enzyme mechanism. This distinct subfamily
           is found only in bacteria and archea. Its exact
           characteristics are not known..
          Length = 121

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 47/153 (30%), Positives = 61/153 (39%), Gaps = 54/153 (35%)

Query: 672 LGDKITTDHISPAGS--IPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIR 729
           +GD ITTDHI PAG+  +PL                        R N   +    F  + 
Sbjct: 2   VGDNITTDHIMPAGAKVLPL------------------------RSNIPAISEFVFHRV- 36

Query: 730 ICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789
             +    E  K  G                         P  +  G  YG GSSR+ AA 
Sbjct: 37  --DPTFAERAKAAG-------------------------PGFIVGGENYGQGSSREHAAL 69

Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAF 822
               LGVR+V+A+SF RIHR+NLI  G++P  F
Sbjct: 70  APMYLGVRAVLAKSFARIHRANLINFGILPLTF 102


>gnl|CDD|73200 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase
           (aconitate hydratase) catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle. This is the aconitase swivel domain, which
           undergoes swivelling conformational change in the enzyme
           mechanism. The aconitase family contains the following
           proteins: - Iron-responsive  element binding protein
           (IRE-BP). IRE-BP is a cytosolic protein that binds to
           iron-responsive elements (IREs). IREs are stem-loop
           structures found in the 5'UTR of ferritin, and delta
           aminolevulinic acid synthase mRNAs, and in the 3'UTR of
           transferrin receptor mRNA. IRE-BP also express aconitase
           activity. - 3-isopropylmalate dehydratase
           (isopropylmalate isomerase), the enzyme that catalyzes
           the second step in the biosynthesis of leucine. -
           Homoaconitase (homoaconitate hydratase), an enzyme that
           participates in the alpha-aminoadipate pathway of lysine
           biosynthesis and that converts cis-homoaconitate into
           homoisocitric acid..
          Length = 88

 Score = 73.5 bits (180), Expect = 3e-13
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 769 PLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISW 828
           P VV     YG GSSR+ AA   RLLG R+VIA+SF RI   NL+  G++P  F     +
Sbjct: 16  PGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDY 75

Query: 829 KNLNIKGDEI 838
             L+  GDE+
Sbjct: 76  LKLHT-GDEL 84



 Score = 28.4 bits (63), Expect = 8.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 671 LLGDKITTDHISPAG 685
            +   ITTDHISPAG
Sbjct: 1   KVAGNITTDHISPAG 15


>gnl|CDD|29527 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel
           domain. Aconitase (also known as aconitate hydratase and
           citrate hydro-lyase) catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle. This is the aconitase swivel domain, which
           undergoes swivelling conformational change in the enzyme
           mechanism. In eukaryotes two isozymes of aconitase are
           known to exist: one found in the mitochondrial matrix
           and the other found in the cytoplasm.  This is the
           mitochondrial form. The mitochondrial product is coded
           by a nuclear gene. Most members of this subfamily are
           mitochondrial but there are some bacterial members..
          Length = 149

 Score = 70.8 bits (173), Expect = 2e-12
 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 31/175 (17%)

Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734
           K TTDHIS AG          +L+ RG  +   N       N E    G  ++++  N +
Sbjct: 5   KCTTDHISAAGP---------WLKYRGHLDNISNNLLIGAINAE---NGKANSVK--NQV 50

Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794
            GE G                + D A  YK   +  VV     YG GSSR+ AA   R L
Sbjct: 51  TGEYGP---------------VPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHL 95

Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849
           G R++I +SF RIH +NL   G++P  F     +    I  D+ ++I  L   +P
Sbjct: 96  GGRAIITKSFARIHETNLKKQGLLPLTFADPADYD--KIHPDDKVDILGLTDFAP 148


>gnl|CDD|73275 cd01577, IPMI_Swivel, Aconatase-like swivel domain of
           3-isopropylmalate dehydratase and related
           uncharacterized proteins. 3-isopropylmalate dehydratase
           catalyzes the isomerization between 2-isopropylmalate
           and 3-isopropylmalate, via the formation of
           2-isopropylmaleate 3-isopropylmalate. IPMI is involved
           in fungal and bacterial leucine biosynthesis and is also
           found in eukaryotes. This is the aconitase-like swivel
           domain, which is believed to undergo swivelling
           conformational change in the enzyme mechanism..
          Length = 91

 Score = 55.9 bits (135), Expect = 5e-08
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830
           ++ AG  +G GSSR+ A    +  G+R+VIAESF RI   N I  G++P         + 
Sbjct: 20  IIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEV 79

Query: 831 LNIKGDEI 838
               GDE+
Sbjct: 80  EAKPGDEV 87


>gnl|CDD|31250 COG1049, AcnB, Aconitase B [Energy production and conversion].
          Length = 852

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 93/389 (23%), Positives = 145/389 (37%), Gaps = 86/389 (22%)

Query: 208 PDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLG-CPISMLLPEVVGFEVTGSLQEGV 265
           PDT   G DSHT     +GI      G+ A AA  G  P+ M  PE V     G +Q G+
Sbjct: 480 PDTVGTGGDSHTRF--PIGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPGI 535

Query: 266 TATDLVLTITQMLRKEGVVS-----KFVEFFGSGFE----SMVLADRA-TIANMAPEYGA 315
           T  DLV  I     K+G+++     K   F G   E      +  ++A  + + + E  A
Sbjct: 536 TLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSA 595

Query: 316 T-CGFFPVDRGTIDYLRL----------SGRSNS-----RVDLVEAYTKVQGMWREDIDY 359
             C         I+YL+            G  ++     R+D +EA+     +   D D 
Sbjct: 596 AGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADA 655

Query: 360 EKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418
           E  A    +++DL ++  P +A P  P+    LSEV                 +DE + +
Sbjct: 656 EYAAV---IEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------KIDEVF-I 698

Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478
             C  ++ H                      AG L  NA +  L ++ WV    AP +++
Sbjct: 699 GSCMTNIGH-------------------FRAAGKLLENA-KGELPTRLWV----APPTKM 734

Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538
               L + G        G  +   GC+ C+GN   +           + V +   +  RN
Sbjct: 735 DAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARVAD--------GATVFS---TSTRN 783

Query: 539 FEGRISPDVEANYLLSPPLVVAYALAGNV 567
           F  R+       YL S  L    A+ G +
Sbjct: 784 FPNRLGKGANV-YLASAELAAVCAILGKI 811


>gnl|CDD|30415 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino
           acid transport and metabolism].
          Length = 191

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830
           ++ AG  +G GSSR+ A    +  G+R+VIA SF  I   N I  G++P    +    + 
Sbjct: 65  ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124

Query: 831 LN-IKGDEI-INIRKLKTISPR 850
              + GDE+ +++   +  +P 
Sbjct: 125 FEDVPGDEVTVDLETGEVTNPT 146


>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
           cis-aconitate from citrate as part of the TCA cycle.
           Aconitase B catalytic domain. Aconitate hydratase B
           catalyses the formation of cis-aconitate from citrate as
           part of the TCA cycle. Aconitase has an active (4FE-4S)
           and an inactive (3FE-4S) form. The active cluster is
           part of the catalytic site that interconverts citrate,
           cis-aconitase and isocitrate. The domain architecture of
           aconitase B is different from other aconitases in that
           the catalytic domain is normally found at C-terminus for
           other aconitases, but it is at N-terminus for B family.
           It also has a HEAT domain before domain 4 which plays a
           role in protein-protein interaction. This alignment is
           the core domain including domains 1,2 and 3.
          Length = 436

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 94/420 (22%), Positives = 152/420 (36%), Gaps = 104/420 (24%)

Query: 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSHTTMINALGILGWGVG-GIE 235
           PG G+ H           W        +  PDT   G DSHT     +GI  +  G G+ 
Sbjct: 91  PGDGVIHS----------WLNR-----MLLPDTVGTGGDSHTRF--PIGI-SFPAGSGLV 132

Query: 236 AEAAMLG-CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVS-----KFVE 289
           A AA  G  P+ M  PE V     G +Q G+T  DLV  I     ++G+++     K   
Sbjct: 133 AFAAATGVMPLDM--PESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNV 190

Query: 290 FFGSGFE----SMVLADRA-TIANMAPEYGATCGFFPVDRGT-IDYLRL----------S 333
           F G   E      +  ++A  + + + E  A      +D+   I+YL            +
Sbjct: 191 FNGRILEIEGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIAN 250

Query: 334 GRSNS-----RVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVS-PSVAGPRRPES 387
           G  ++     R+  +E +     +   D D E  A    +++DL ++  P +A P  P+ 
Sbjct: 251 GYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAA---VIEIDLDDIKEPILACPNDPDD 307

Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447
              LSEV                 +DE + +  C  ++  G                   
Sbjct: 308 VKLLSEV-------------AGKKIDEVF-IGSCMTNI--GHFRA--------------- 336

Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507
             A  + R        ++ WV    AP +++ +  L + G        G      GC+ C
Sbjct: 337 --AAKILRGK--EFKPTRLWV----APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388

Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567
           +GN           +   + V +   +  RNF+ R+    E  YL S  L    AL G +
Sbjct: 389 MGN--------QARVADGATVFS---TSTRNFDNRVGKGAEV-YLGSAELAAVCALLGRI 436


>gnl|CDD|32825 COG3008, PqiB, Paraquat-inducible protein B [General function
           prediction only].
          Length = 553

 Score = 35.2 bits (81), Expect = 0.069
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV--NKYVTCDL 609
           L +PP  +A   AG +R +L    +G    GSPVY R I     E   F    + VT  +
Sbjct: 149 LDTPP--IASLDAGGLRIHLDAKDLGSLNVGSPVYFRKIPVGQVESYQFDPDKQGVTIQV 206

Query: 610 Y-KKKYSDVFKGDSSWWNI 627
           + +  Y  + K DS +WN+
Sbjct: 207 FIEAPYDRLVKKDSRFWNV 225


>gnl|CDD|29530 cd01674, Homoaconitase_Swivel, Homoaconitase swivel domain. This
           family includes homoaconitase and other uncharacterized
           proteins of the Aconitase family. Homoaconitase is part
           of an unusual lysine biosynthesis pathway found only in
           filamentous fungi, in which lysine is synthesized via
           the alpha-aminoadipate pathway. In this pathway,
           homoaconitase catalyzes the conversion of
           cis-homoaconitic acid into homoisocitric acid. The
           reaction mechanism is believed to be similar to that of
           other aconitases. This is the swivel domain, which is
           believed to undergo swivelling conformational change in
           the enzyme mechanism..
          Length = 129

 Score = 34.3 bits (78), Expect = 0.15
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 757 YDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLI 813
           YD+    K  Q  ++V +G  +G GSSR+ AA      G+  V++ SF  I   N I
Sbjct: 35  YDSEFSTKTKQGDILV-SGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSI 90


>gnl|CDD|35675 KOG0454, KOG0454, KOG0454, 3-isopropylmalate dehydratase (aconitase
           superfamily) [Amino acid transport and metabolism].
          Length = 502

 Score = 31.5 bits (71), Expect = 1.1
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 750 SKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHR 809
           S    F+       K      ++  G  +G GSSR+ A       G ++++A S+ RI  
Sbjct: 332 SFVTDFVLPVEPLRKYS----IIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFF 387

Query: 810 SNLIGMGVIP 819
            N +  G +P
Sbjct: 388 RNSVATGELP 397


>gnl|CDD|32492 COG2343, COG2343, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 132

 Score = 30.7 bits (69), Expect = 1.6
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 618 FKGDSSWWNIEVP--ESETYMWDEKSTYVRNPPYFETISKHI---PEIVDIC 664
           +KG +S++++ V    +    W    TY    P    I  H+   P  V+I 
Sbjct: 78  YKGTASYYSVVVGGERNPDAAW----TYPNPKPAARAIKGHVAFYPVKVEII 125


>gnl|CDD|39362 KOG4160, KOG4160, KOG4160, BPI/LBP/CETP family protein [Defense
           mechanisms].
          Length = 492

 Score = 30.0 bits (67), Expect = 3.3
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 58  CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117
           C+     +H  +          S  S+     L      + +V++    +     + GD 
Sbjct: 160 CSAAISDLHVQM---------GSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDL 210

Query: 118 QNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLE 152
            +    +PV + +D +  +DYS        +  +E
Sbjct: 211 NSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIE 245


>gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to
           the GT1 family of glycosyltransferases. aviGT4 in
           Streptomyces viridochromogenes has been shown to be
           involved in biosynthesis of oligosaccharide antibiotic
           avilamycin A. Inactivation of aviGT4 resulted in a
           mutant that accumulated a novel avilamycin derivative
           lacking the terminal eurekanate residue..
          Length = 335

 Score = 29.1 bits (66), Expect = 6.0
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 236 AEAAMLGCPISML----LPEVVGFEVTGSLQEGVTA 267
            EA   G P+       +PEVV   VTG L + V  
Sbjct: 262 IEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEE 297


>gnl|CDD|33194 COG3387, SGA1, Glucoamylase and related glycosyl hydrolases
           [Carbohydrate transport and metabolism].
          Length = 612

 Score = 28.8 bits (64), Expect = 6.3
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 583 SPVYLRDIWPKDSEIQSFV---NKYVTCDL-----YKKKYSDVFKGDSSWWNIEVPESET 634
             V    I P D  I + V    + +  D      Y  +Y D   GD+  W I      T
Sbjct: 486 GLVLFGFIPPDDPRILATVEAIERELLVDGGGIRRYNNEYDDGLGGDNGPWII------T 539

Query: 635 YMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAA 694
            +W   S Y       +   K +  ++    A  L LL +++      P G+ PL  + A
Sbjct: 540 TLW--LSEYYLALGRLDEAKKLLEWLLA--FASPLGLLPEQVDDGSGEPLGAFPLAWSHA 595

Query: 695 SYLR 698
            ++ 
Sbjct: 596 EFII 599


>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit.
          Length = 1070

 Score = 28.3 bits (64), Expect = 9.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 873 IDTLDEINHLKN 884
           + TLD+I+HLKN
Sbjct: 300 MGTLDDIDHLKN 311


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,040,085
Number of extensions: 611238
Number of successful extensions: 1406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1355
Number of HSP's successfully gapped: 42
Length of query: 896
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 793
Effective length of database: 4,038,010
Effective search space: 3202141930
Effective search space used: 3202141930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)