RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] (896 letters) >gnl|CDD|31249 COG1048, AcnA, Aconitase A [Energy production and conversion]. Length = 861 Score = 1179 bits (3052), Expect = 0.0 Identities = 531/891 (59%), Positives = 634/891 (71%), Gaps = 31/891 (3%) Query: 6 NSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQI 65 +SF R L+VGG Y YY LPK E +G IS+LP S+K+LLENLLR EDG T+E I Sbjct: 1 DSFKARKTLTVGGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHI 55 Query: 66 HAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVP 125 A +WL G E E+++R +RV+MQDFTGVPAVVDLAAMRDA+V LGGDP INP+VP Sbjct: 56 EALARWL-PSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVP 114 Query: 126 VDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQ 185 VDLVIDHS+ VD G+ DA +N +LE++RN ERY+FLKW K+F NFRVVPPGTGI HQ Sbjct: 115 VDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 Query: 186 INLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 +NLEYL + VW K +AYPDT VGTDSHTTMI LG+LGWGVGGIEAEAAMLG P Sbjct: 175 VNLEYLAKVVWAK----PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPW 230 Query: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRAT 305 ML+PEVVG ++TG L EGVTATDLVLT+T MLRK+GVV KFVEFFG G S+ LADRAT Sbjct: 231 YMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRAT 290 Query: 306 IANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFT 365 IANM PEYGAT GFFP+D T+DYLRL+GRS +V LVEAY K QG+W + D + + Sbjct: 291 IANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAE-YD 349 Query: 366 KKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHL 425 K ++LDL V PS+AGP+RP+ R+ LSEV +F + E K L Sbjct: 350 KVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLL-------GKEL 402 Query: 426 KHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 G V IA+ITSCTNT NP V+I AGLLA+ AV GLK KPWVKTS APGS+V EYL + Sbjct: 403 GDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462 Query: 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISP 545 AGL+ YLE LGF++VG+GCTTCIGNSG L +EI + I+ LVV VLSGNRNFEGRI P Sbjct: 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGP 522 Query: 546 DVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYV 605 V+ANYL SPPLVVAYALAG + +L DP+G D G PVYL+DIWP EI V K V Sbjct: 523 LVKANYLASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAV 582 Query: 606 TCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICG 665 ++++K+Y+DVFK W IEVPE Y W STY+R PP+F+ + E I G Sbjct: 583 KPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGA---EPKPIKG 635 Query: 666 ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTF 725 AR+L LGD ITTDHISPAGSI S A YL + GV+ DFN +G+RRGNHEVMMRGTF Sbjct: 636 ARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTF 695 Query: 726 SNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRD 785 +NIRI N M+ E GGYTIH PS E IYDAAM+YK + +PLVV AG YG GSSRD Sbjct: 696 ANIRIRNEMVPGE---GGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRD 749 Query: 786 WAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLK 845 WAAKG RLLGV++VIAESFERIHRSNLIGMGV+P F G ++ L + G+E I+I L+ Sbjct: 750 WAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE 809 Query: 846 TISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 + P T+ + DG + P++C IDT +EI + K GGIL V R L Sbjct: 810 NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLL 860 >gnl|CDD|35673 KOG0452, KOG0452, KOG0452, RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification, Translation, ribosomal structure and biogenesis]. Length = 892 Score = 1039 bits (2687), Expect = 0.0 Identities = 453/893 (50%), Positives = 607/893 (67%), Gaps = 26/893 (2%) Query: 14 LSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLD 73 L G Y Y+ LPK + +LP S++VLLE+ +R D V K+ + + W Sbjct: 16 LPKPGGVYKYFDLPKLNSR----YDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDW-K 70 Query: 74 NKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHS 133 N + EV ++ +RV++QDFTGVPAVVD AAMRDA+ LGGDP+ INPL PVDLVIDHS Sbjct: 71 NTQKKQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHS 130 Query: 134 LIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQ 193 + VD++ + DA+ +N++LE++RN+ER+ FLKWG ++F N +VPPG+GI HQ+NLEYL + Sbjct: 131 VQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLAR 190 Query: 194 SVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253 V+ +++ YPD+ VGTDSHTTMI+ LG+LGWGVGGIEAEA MLG PISM+LPEV+ Sbjct: 191 VVF----ESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVI 246 Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEY 313 G+++TG L VT+TDLVLTIT+ LR+ GVV KFVEFFG G + +ADRATIANM PEY Sbjct: 247 GYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEY 306 Query: 314 GATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE-KVAFTKKMKLDL 372 GAT GFFPVD T+ YL+ +GRS ++D++E Y K M+R+ D +T+ ++LDL Sbjct: 307 GATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDL 366 Query: 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFH 424 G V PSV+GP+RP R+++S++ + F + ++ ++ + ++ G Sbjct: 367 GTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAK 426 Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484 LKHG V IA+ITSCTNT NPSVM+GAGLLA+ AV GL KP++KTS +PGS V +YL Sbjct: 427 LKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLS 486 Query: 485 QAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRIS 544 ++G++ YLE LGF +VG+GC TCIGNSG L + + I Q LV AGVLSGNRNFEGR+ Sbjct: 487 ESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVH 546 Query: 545 PDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKY 604 P+ ANYL SPPLVVAYA+AG V + +P+G D G V+LRDIWP E+ ++ Sbjct: 547 PNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEH 606 Query: 605 VTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDIC 664 V ++K+ Y + G+ W +EVP S+ Y WD KSTY++ PP+FE +++ +P I Sbjct: 607 VIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGPQSIE 666 Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGT 724 A L LGD +TTDHISPAGSI S AA YL +RG+ +DFN +G+RRGN VM RGT Sbjct: 667 DAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGT 726 Query: 725 FSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSR 784 F+NIR+ N +L + G K T+H PS EEL ++DAA RYK + +PL++ AG EYG+GSSR Sbjct: 727 FANIRLVNKLLSKVGPK---TVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSR 783 Query: 785 DWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR-K 843 DWAAKG LLGV++VIAES+ERIHRSNL+GMG+IP F G L + G E I Sbjct: 784 DWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLP 843 Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 + P Q+ T+ + F C DT E+ + KNGGIL ++R+LS Sbjct: 844 ENILKPGQDITVTTD-TGKVFVC---TLRFDTEVELTYYKNGGILNYMIRKLS 892 >gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. Length = 404 Score = 731 bits (1888), Expect = 0.0 Identities = 290/480 (60%), Positives = 336/480 (70%), Gaps = 76/480 (15%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV++QDFTGVPAVVDLAAMRDA+ LGGDP+ INPL+PVDLVIDHS+ VD+ G DA+ + Sbjct: 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAK 60 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 N LE++RN ERY FLKWGQK+FKN RVVPPGTGI HQ+NLEYL + V+T E+G+ +AY Sbjct: 61 NMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAY 120 Query: 208 PDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTA 267 PD+ VGTDSHTTMIN LG+LGWGVGGIEAEA MLG PISMLLPEVVG ++TG L+ GVTA Sbjct: 121 PDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTA 180 Query: 268 TDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 TDLVLT+TQMLRK GVV KFVEFFG G + +ADRATIANMAPEYGATCGFFPVD Sbjct: 181 TDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 Query: 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPES 387 T+ ++LDL V PSV+GP+RP+ Sbjct: 237 -------------------------------------TQVVELDLSTVEPSVSGPKRPQD 259 Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447 R+ L HG V IA+ITSCTNT NPSVM Sbjct: 260 RVPL-----------------------------------HGSVVIAAITSCTNTSNPSVM 284 Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 + AGLLA+ AV GLK KP+VKTS APGS+V +YL +GL+ YLE LGF +VG+GCTTC Sbjct: 285 LAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTC 344 Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 IGNSG L +E+ E I + LVVA VLSGNRNFEGRI P V ANYL SPPLVVAYALAG V Sbjct: 345 IGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 >gnl|CDD|144063 pfam00330, Aconitase, Aconitase family (aconitate hydratase). Length = 464 Score = 477 bits (1230), Expect = e-135 Identities = 162/507 (31%), Positives = 227/507 (44%), Gaps = 43/507 (8%) Query: 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQ 118 T+ ++ + A V N+ + R RVLMQD T A + L A + + G Sbjct: 1 TLYEKILDAHVDDPANERGT-PYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRRVPG--- 56 Query: 119 NINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178 + DH++ G KD + + RN+E+Y FL+ K+F P Sbjct: 57 -------TTITCDHNIPTQDGGEKD-LNIAIE----RNKEQYDFLEKNVKAFGVGFWGPG 104 Query: 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEA 238 TGI HQI LE T VGTDSHT LG L +GVGG EAE Sbjct: 105 STGIVHQIGLENGFTLPGL------------TLVGTDSHTPTHGGLGALAFGVGGSEAEH 152 Query: 239 AMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESM 298 + G P P+V+G ++TG L G+TA D++L + L +G K VEFFG G + + Sbjct: 153 VLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDL 212 Query: 299 VLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID 358 + R TI NMA E GAT G FP D T YL+ +GR+ + EA K + + + Sbjct: 213 SMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLKSDKDA 272 Query: 359 YEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418 + K +++DL ++ P V GP P+ + +SEVP + KS Y Sbjct: 273 ----QYDKVIEIDLSDIEPHVTGPTTPQDAVPISEVPPDPN-NFLDPVVKSMEKALAYMG 327 Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 LK V A I SCTN+ + A ++ AG KPWVK + PGS+ Sbjct: 328 LWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKG---AAGKGLKPWVKATVVPGSEQ 384 Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538 + GL + + GF GC+ CIG + I V S NRN Sbjct: 385 VKATAERDGLDKIFDEAGFEWRANGCSPCIGMND-RPDIIKGE------KNTCVSSSNRN 437 Query: 539 FEGRISPDVEANYLLSPPLVVAYALAG 565 FEGR + ++L SP +V A A+AG Sbjct: 438 FEGRQGANGRTHWLASPAMVAAAAIAG 464 >gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. Length = 389 Score = 277 bits (710), Expect = 9e-75 Identities = 145/481 (30%), Positives = 206/481 (42%), Gaps = 93/481 (19%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV++QD TG A+ + V + V DH++ Sbjct: 1 RVMLQDATGPMAMKAFEILAALGKVA--------DPSQIACVHDHAV------------- 39 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 LE N E ++FL + PG GI HQI +E L A Sbjct: 40 --QLEKPVNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIMVENL--------------AL 82 Query: 208 P-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266 P D VG+DSHTT LG + G GG + M G P + PEVVG +TG L GVT Sbjct: 83 PGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVT 142 Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 D+VL + ++ +GV+++ VEF+G G S+ + DR TI NM E GAT G FP D+ T Sbjct: 143 GKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202 Query: 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386 + +L +GR + + + + E +Y++V +++DL + P ++GP RP+ Sbjct: 203 LKWLEATGRPLLK--NLWLAFPEELLADEGAEYDQV-----IEIDLSELEPDISGPNRPD 255 Query: 387 SRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSV 446 +S+SEV + I SCTN S Sbjct: 256 DAVSVSEVEG-------------------------------TKIDQVLIGSCTNN-RYSD 283 Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506 M+ A L + A K P V+ PGS++ Y L + G E L G ++ GC Sbjct: 284 MLAAAKLLKGA-----KVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGP 338 Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 C+GN L + GV SGNRNF GR+ YL SP L A A+AG Sbjct: 339 CMGNGARLVAD----------GEVGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 Query: 567 V 567 + Sbjct: 389 I 389 >gnl|CDD|29529 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.. Length = 171 Score = 273 bits (700), Expect = 1e-73 Identities = 105/171 (61%), Positives = 129/171 (75%), Gaps = 2/171 (1%) Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730 LLGD +TTDHISPAGSI S A YL +RGVK +DFN +G+RRGN EVMMRGTF+NIR+ Sbjct: 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60 Query: 731 CNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKG 790 N ++ GG T H P+ E + IYDAAMRYK + VPLV+ AG EYG+GSSRDWAAKG Sbjct: 61 RNKLVPGTE--GGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKG 118 Query: 791 TRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINI 841 LLGV++VIAESFERIHRSNL+GMG++P F G + +L + G+E +I Sbjct: 119 PFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDI 169 >gnl|CDD|35674 KOG0453, KOG0453, KOG0453, Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion, Amino acid transport and metabolism]. Length = 778 Score = 251 bits (643), Expect = 5e-67 Identities = 215/789 (27%), Positives = 321/789 (40%), Gaps = 131/789 (16%) Query: 80 SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS 139 S + R RV MQD + A++ + G + VP + DH + Sbjct: 83 SYLKLRPDRVAMQDASAQMALLQFMSS--------GLKKV---AVPSTIHCDHLIEAQVG 131 Query: 140 GNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKN 199 G+KD + R DL N+E Y FL+ K + PG+GI HQI LE Sbjct: 132 GDKD-LQRASDL----NKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------- 175 Query: 200 ENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVT 258 N A+P +GTDSHT LG L GVGG +A M P + P+V+G ++T Sbjct: 176 ----NYAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLT 231 Query: 259 GSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCG 318 G L + D++L + +L +G +E+FG G S+ ATI NM E GAT Sbjct: 232 GQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTS 291 Query: 319 FFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPS 378 FP + IDYL+ +GR N + Y+K+ +++DL + P Sbjct: 292 LFPYNERMIDYLQATGR-NEIAREARETLDAILAADKGAHYDKI-----IEIDLSTLEPH 345 Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSC 438 V GP P+ S+ V+++ E +K +P+ + + I SC Sbjct: 346 VNGPFTPDL--------STPVSKLGENSEK-----NGWPI----------KIKVGLIGSC 382 Query: 439 TNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFS 498 TN+ + M A + + A GLK K V PGS+ + + G+ E LE G Sbjct: 383 TNS-SYEDMSRAADIVKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGI 439 Query: 499 LVGFGCTTCIG--NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSP 555 ++ C CIG + +KK I V S NRNF GR + +L SP Sbjct: 440 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPATHAFLTSP 490 Query: 556 PLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615 +V A A+AG++ N P + + P + +L KK + Sbjct: 491 EIVTALAIAGDLSFN----PETDSLTAPDGKAFKLEPPIGD-----------ELPKKGFD 535 Query: 616 DVFKGDSSWWNIEVPESETYM-WDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGD 674 G ++ S + D S ++ F+ D+ +IL + Sbjct: 536 ---PGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFDKWDGK-----DLEDLKILIKVKG 587 Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 K TTDHIS AG +L+ RG E N N E + NY+ Sbjct: 588 KCTTDHISAAG---------PWLKYRGHLENISNNDLIGAINKENG-----EANCVKNYL 633 Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 GE G + D A YK + VV YG GSSR+ AA R L Sbjct: 634 TGEFGT---------------VPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHL 678 Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQEST 854 G R++I +SF RIH +NL G++P F + I+ + ++I+ L +P + T Sbjct: 679 GGRAIITKSFARIHETNLKKQGLLPLTFANPADYD--KIRPADKVSIKGLTRRTPGKPLT 736 Query: 855 LEIHYSDGT 863 + + DG Sbjct: 737 VVVTKKDGK 745 >gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382 Score = 172 bits (438), Expect = 5e-43 Identities = 118/443 (26%), Positives = 167/443 (37%), Gaps = 99/443 (22%) Query: 128 LVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQIN 187 V DH++ + A + K L E F G GICH I Sbjct: 32 AVFDHNVPTP---DIKAAEQVKTLRKFAKEFGINFFDVG------------RQGICHVI- 75 Query: 188 LEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 L + T P T VG DSHT A G G+G + + + Sbjct: 76 ---LPEKGLTL---------PGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLW 123 Query: 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATI 306 +PE + V G L GVTA D++L I + +G K +EF G ES+ + +R T+ Sbjct: 124 FRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTL 183 Query: 307 ANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDID--YEKVAF 364 NMA E GA G D T +YL+ G++ + + D D Y+KV Sbjct: 184 CNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKE------------LKSDEDAEYDKV-- 229 Query: 365 TKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 +++D + P VA P P++ + +SEV E + Sbjct: 230 ---VEIDASELEPQVAWPHSPDNVVPVSEV-------------------EGIKI------ 261 Query: 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484 D I SCTN + A +L G K V+ P SQ Y+ Sbjct: 262 ----DQVF--IGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAE 309 Query: 485 QAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543 + GL+E G + GC C+G + G L E V + NRNF+GR+ Sbjct: 310 KEGLIEIFIEAGAEVRPPGCGACLGGHMGVLAPG--ERC---------VSTSNRNFKGRM 358 Query: 544 -SPDVEANYLLSPPLVVAYALAG 565 SP YL SP A A+ G Sbjct: 359 GSPGAR-IYLASPATAAASAITG 380 >gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known. Length = 380 Score = 171 bits (436), Expect = 6e-43 Identities = 139/483 (28%), Positives = 201/483 (41%), Gaps = 111/483 (22%) Query: 90 LMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLI-VDYSGNKDAV 145 L QD TG A + AM G + V +L +DH+ + D+ Sbjct: 4 LTQDATGTMAYLQFEAM--------GVDR-----VRTELSVSYVDHNTLQTDF------- 43 Query: 146 TRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENI 205 N + +RFL+ + PG GICHQ++LE Sbjct: 44 ---------ENADDHRFLQTVAARY-GIYFSRPGNGICHQVHLE--------------RF 79 Query: 206 AYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEG 264 A P T +G+DSHT LG+L G GG++ AM G P + +P+VVG +TG L Sbjct: 80 AVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPW 139 Query: 265 VTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDR 324 VTA D++L + + L +G V K E+ G G ++ + +RATI NM E GAT FP D Sbjct: 140 VTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDE 199 Query: 325 GTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRR 384 T ++L GR + V+L D +Y++ +++DL + P +A P Sbjct: 200 RTREFLAAQGREDDWVELAA---------DADAEYDEE-----IEIDLSELEPLIARPHS 245 Query: 385 PESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNP 444 P++ + + EV +K VAI SCTN+ Sbjct: 246 PDNVVPVREVAG----------------------------IKVDQVAIG---SCTNSSYE 274 Query: 445 SVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 +M A +L G + P V APGS+ E L + G + L A G ++ C Sbjct: 275 DLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILESAC 328 Query: 505 TTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 CIG A S V + NRNFEGR + YL SP + A AL Sbjct: 329 GPCIGMGQA------PPTGGVS-----VRTFNRNFEGRSGTKDDLVYLASPEVAAAAALT 377 Query: 565 GNV 567 G + Sbjct: 378 GVI 380 >gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. Length = 412 Score = 170 bits (432), Expect = 2e-42 Identities = 137/488 (28%), Positives = 212/488 (43%), Gaps = 88/488 (18%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV MQD T A++ + G P+ VP + DH LI G + + R Sbjct: 1 RVAMQDATAQMALLQFMS--------SGLPK---VAVPSTIHCDH-LIEAQVGGEKDLKR 48 Query: 148 NKDLEYQRNEERYRFL-----KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202 KD+ N+E Y FL K+G +K PG+GI HQI LE Sbjct: 49 AKDI----NKEVYDFLASAGAKYGIGFWK------PGSGIIHQIVLE------------- 85 Query: 203 ENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261 N A+P +GTDSHT LG + GVGG +A M G P + P+V+G ++TG L Sbjct: 86 -NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKL 144 Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 + D++L + +L +G VE+FG G +S+ TI NM E GAT FP Sbjct: 145 SGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFP 204 Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381 + YL+ +GR+ DL + + + E +Y+++ ++++L + P + G Sbjct: 205 YNERMKKYLKATGRAEI-ADLADEFKDDLLVADEGAEYDQL-----IEINLSELEPHING 258 Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441 P P+ +S+ K +P+ D+ + I SCTN+ Sbjct: 259 PFTPDLATPVSKF-------------KEVAEKNGWPL----------DLRVGLIGSCTNS 295 Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501 + M A +A+ A+ GLK K + PGS+ + + GL++ G ++ Sbjct: 296 -SYEDMGRAASIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLA 352 Query: 502 FGCTTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPL 557 C CIG K E + ++ S NRNF GR + ++ SP + Sbjct: 353 NACGPCIGQWDRKDIKKGEKNTIVT----------SYNRNFTGRNDANPATHAFVASPEI 402 Query: 558 VVAYALAG 565 V A A+AG Sbjct: 403 VTAMAIAG 410 >gnl|CDD|30414 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]. Length = 423 Score = 166 bits (422), Expect = 2e-41 Identities = 108/416 (25%), Positives = 158/416 (37%), Gaps = 77/416 (18%) Query: 154 QRNEERYRFLKWGQKSFKNFRVVPPGT-GICHQINLEYLGQSVWTKNENGENIAYP-DTC 211 + E+ + L+ K F G GI HQ+ E + + P T Sbjct: 72 IKAAEQQKELRENAKEFGIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTI 118 Query: 212 VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLV 271 VG DSHT A G +G+G + + + +P+ + EV G L GVTA D++ Sbjct: 119 VGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDII 178 Query: 272 LTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331 L + + +G +EF G S+ + R T+ NMA E GA G D T +YL+ Sbjct: 179 LALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK 238 Query: 332 LSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSL 391 + W+ E + K ++LD ++ P VA P P++ + + Sbjct: 239 -------------EWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPV 285 Query: 392 SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAG 451 SEV E P+K + I SCTN + A Sbjct: 286 SEV-------------------EPDPIK----------IDQVFIGSCTNGRIEDLRAAA- 315 Query: 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-N 510 + G K P V+ PGS+ E + GL + GF GC C+G + Sbjct: 316 -----EILKGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMH 370 Query: 511 SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565 G L E + NRNFEGR SP YL SP + A A+ G Sbjct: 371 PGVLGP--GERC---------ASTSNRNFEGRQGSPGART-YLASPAMAAAAAVEG 414 >gnl|CDD|144335 pfam00694, Aconitase_C, Aconitase C-terminal domain. Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. Length = 131 Score = 159 bits (403), Expect = 5e-39 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 693 AASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 +L RGV DF GT +NI + N + +G + T H P+ E Sbjct: 1 MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILF--DGWRANKTTHLPTGE 58 Query: 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNL 812 DAA RYK P++V G YG GSSR+ AA R LG+++VIA+SF RIHR+NL Sbjct: 59 NPDFVDAAERYKQHGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNL 118 Query: 813 IGMGVIPFAFGKG 825 I G++P F G Sbjct: 119 IKNGLLPLTFPNG 131 >gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. Length = 363 Score = 114 bits (286), Expect = 1e-25 Identities = 106/396 (26%), Positives = 155/396 (39%), Gaps = 101/396 (25%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235 P G GI HQI +E E A+P T V +DSH+ M +G LG + + Sbjct: 64 PAGRGIGHQIMIE-------------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTD 110 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 A A +P V E+ G L +GVT D+++ + + K+ V++ +EF GSG Sbjct: 111 AAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGL 170 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 S+ + R TIANM E+GA G FP D Sbjct: 171 NSLSVDTRLTIANMTTEWGALSGLFPTD-------------------------------- 198 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415 K + LDL +SP V+GP K S L E Sbjct: 199 ---------AKHLILDLSTLSPYVSGPNS---------------------VKVSTPLKE- 227 Query: 416 YPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK-PWVKTSC 472 L+ ++ I A + SCTN+ + A ++ + G P V+ Sbjct: 228 ---------LEAQNIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYV 278 Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGV 532 A S + G + L G + + GC CIG L + EV G+ Sbjct: 279 AAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-GEV---------GI 328 Query: 533 LSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 + NRNF+GR+ S + A YL SP +V A A++G + Sbjct: 329 SATNRNFKGRMGSTEALA-YLASPAVVAASAISGKI 363 >gnl|CDD|29528 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.. Length = 121 Score = 74.2 bits (182), Expect = 1e-13 Identities = 47/153 (30%), Positives = 61/153 (39%), Gaps = 54/153 (35%) Query: 672 LGDKITTDHISPAGS--IPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIR 729 +GD ITTDHI PAG+ +PL R N + F + Sbjct: 2 VGDNITTDHIMPAGAKVLPL------------------------RSNIPAISEFVFHRV- 36 Query: 730 ICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 + E K G P + G YG GSSR+ AA Sbjct: 37 --DPTFAERAKAAG-------------------------PGFIVGGENYGQGSSREHAAL 69 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAF 822 LGVR+V+A+SF RIHR+NLI G++P F Sbjct: 70 APMYLGVRAVLAKSFARIHRANLINFGILPLTF 102 >gnl|CDD|73200 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.. Length = 88 Score = 73.5 bits (180), Expect = 3e-13 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 769 PLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISW 828 P VV YG GSSR+ AA RLLG R+VIA+SF RI NL+ G++P F + Sbjct: 16 PGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDY 75 Query: 829 KNLNIKGDEI 838 L+ GDE+ Sbjct: 76 LKLHT-GDEL 84 Score = 28.4 bits (63), Expect = 8.9 Identities = 10/15 (66%), Positives = 11/15 (73%) Query: 671 LLGDKITTDHISPAG 685 + ITTDHISPAG Sbjct: 1 KVAGNITTDHISPAG 15 >gnl|CDD|29527 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.. Length = 149 Score = 70.8 bits (173), Expect = 2e-12 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 31/175 (17%) Query: 675 KITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 K TTDHIS AG +L+ RG + N N E G ++++ N + Sbjct: 5 KCTTDHISAAGP---------WLKYRGHLDNISNNLLIGAINAE---NGKANSVK--NQV 50 Query: 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 GE G + D A YK + VV YG GSSR+ AA R L Sbjct: 51 TGEYGP---------------VPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHL 95 Query: 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849 G R++I +SF RIH +NL G++P F + I D+ ++I L +P Sbjct: 96 GGRAIITKSFARIHETNLKKQGLLPLTFADPADYD--KIHPDDKVDILGLTDFAP 148 >gnl|CDD|73275 cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.. Length = 91 Score = 55.9 bits (135), Expect = 5e-08 Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 ++ AG +G GSSR+ A + G+R+VIAESF RI N I G++P + Sbjct: 20 IIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEV 79 Query: 831 LNIKGDEI 838 GDE+ Sbjct: 80 EAKPGDEV 87 >gnl|CDD|31250 COG1049, AcnB, Aconitase B [Energy production and conversion]. Length = 852 Score = 51.1 bits (122), Expect = 1e-06 Identities = 93/389 (23%), Positives = 145/389 (37%), Gaps = 86/389 (22%) Query: 208 PDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLG-CPISMLLPEVVGFEVTGSLQEGV 265 PDT G DSHT +GI G+ A AA G P+ M PE V G +Q G+ Sbjct: 480 PDTVGTGGDSHTRF--PIGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPGI 535 Query: 266 TATDLVLTITQMLRKEGVVS-----KFVEFFGSGFE----SMVLADRA-TIANMAPEYGA 315 T DLV I K+G+++ K F G E + ++A + + + E A Sbjct: 536 TLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSA 595 Query: 316 T-CGFFPVDRGTIDYLRL----------SGRSNS-----RVDLVEAYTKVQGMWREDIDY 359 C I+YL+ G ++ R+D +EA+ + D D Sbjct: 596 AGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADA 655 Query: 360 EKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPV 418 E A +++DL ++ P +A P P+ LSEV +DE + + Sbjct: 656 EYAAV---IEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------KIDEVF-I 698 Query: 419 KGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 C ++ H AG L NA + L ++ WV AP +++ Sbjct: 699 GSCMTNIGH-------------------FRAAGKLLENA-KGELPTRLWV----APPTKM 734 Query: 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRN 538 L + G G + GC+ C+GN + + V + + RN Sbjct: 735 DAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARVAD--------GATVFS---TSTRN 783 Query: 539 FEGRISPDVEANYLLSPPLVVAYALAGNV 567 F R+ YL S L A+ G + Sbjct: 784 FPNRLGKGANV-YLASAELAAVCAILGKI 811 >gnl|CDD|30415 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]. Length = 191 Score = 49.8 bits (119), Expect = 3e-06 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 ++ AG +G GSSR+ A + G+R+VIA SF I N I G++P + + Sbjct: 65 ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124 Query: 831 LN-IKGDEI-INIRKLKTISPR 850 + GDE+ +++ + +P Sbjct: 125 FEDVPGDEVTVDLETGEVTNPT 146 >gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3. Length = 436 Score = 49.4 bits (118), Expect = 4e-06 Identities = 94/420 (22%), Positives = 152/420 (36%), Gaps = 104/420 (24%) Query: 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSHTTMINALGILGWGVG-GIE 235 PG G+ H W + PDT G DSHT +GI + G G+ Sbjct: 91 PGDGVIHS----------WLNR-----MLLPDTVGTGGDSHTRF--PIGI-SFPAGSGLV 132 Query: 236 AEAAMLG-CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVS-----KFVE 289 A AA G P+ M PE V G +Q G+T DLV I ++G+++ K Sbjct: 133 AFAAATGVMPLDM--PESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNV 190 Query: 290 FFGSGFE----SMVLADRA-TIANMAPEYGATCGFFPVDRGT-IDYLRL----------S 333 F G E + ++A + + + E A +D+ I+YL + Sbjct: 191 FNGRILEIEGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIAN 250 Query: 334 GRSNS-----RVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVS-PSVAGPRRPES 387 G ++ R+ +E + + D D E A +++DL ++ P +A P P+ Sbjct: 251 GYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAA---VIEIDLDDIKEPILACPNDPDD 307 Query: 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVM 447 LSEV +DE + + C ++ G Sbjct: 308 VKLLSEV-------------AGKKIDEVF-IGSCMTNI--GHFRA--------------- 336 Query: 448 IGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 A + R ++ WV AP +++ + L + G G GC+ C Sbjct: 337 --AAKILRGK--EFKPTRLWV----APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 Query: 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 +GN + + V + + RNF+ R+ E YL S L AL G + Sbjct: 389 MGN--------QARVADGATVFS---TSTRNFDNRVGKGAEV-YLGSAELAAVCALLGRI 436 >gnl|CDD|32825 COG3008, PqiB, Paraquat-inducible protein B [General function prediction only]. Length = 553 Score = 35.2 bits (81), Expect = 0.069 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV--NKYVTCDL 609 L +PP +A AG +R +L +G GSPVY R I E F + VT + Sbjct: 149 LDTPP--IASLDAGGLRIHLDAKDLGSLNVGSPVYFRKIPVGQVESYQFDPDKQGVTIQV 206 Query: 610 Y-KKKYSDVFKGDSSWWNI 627 + + Y + K DS +WN+ Sbjct: 207 FIEAPYDRLVKKDSRFWNV 225 >gnl|CDD|29530 cd01674, Homoaconitase_Swivel, Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.. Length = 129 Score = 34.3 bits (78), Expect = 0.15 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 757 YDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLI 813 YD+ K Q ++V +G +G GSSR+ AA G+ V++ SF I N I Sbjct: 35 YDSEFSTKTKQGDILV-SGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSI 90 >gnl|CDD|35675 KOG0454, KOG0454, KOG0454, 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]. Length = 502 Score = 31.5 bits (71), Expect = 1.1 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 750 SKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHR 809 S F+ K ++ G +G GSSR+ A G ++++A S+ RI Sbjct: 332 SFVTDFVLPVEPLRKYS----IIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFF 387 Query: 810 SNLIGMGVIP 819 N + G +P Sbjct: 388 RNSVATGELP 397 >gnl|CDD|32492 COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 132 Score = 30.7 bits (69), Expect = 1.6 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Query: 618 FKGDSSWWNIEVP--ESETYMWDEKSTYVRNPPYFETISKHI---PEIVDIC 664 +KG +S++++ V + W TY P I H+ P V+I Sbjct: 78 YKGTASYYSVVVGGERNPDAAW----TYPNPKPAARAIKGHVAFYPVKVEII 125 >gnl|CDD|39362 KOG4160, KOG4160, KOG4160, BPI/LBP/CETP family protein [Defense mechanisms]. Length = 492 Score = 30.0 bits (67), Expect = 3.3 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%) Query: 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 C+ +H + S S+ L + +V++ + + GD Sbjct: 160 CSAAISDLHVQM---------GSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDL 210 Query: 118 QNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLE 152 + +PV + +D + +DYS + +E Sbjct: 211 NSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIE 245 >gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.. Length = 335 Score = 29.1 bits (66), Expect = 6.0 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%) Query: 236 AEAAMLGCPISML----LPEVVGFEVTGSLQEGVTA 267 EA G P+ +PEVV VTG L + V Sbjct: 262 IEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEE 297 >gnl|CDD|33194 COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]. Length = 612 Score = 28.8 bits (64), Expect = 6.3 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 18/124 (14%) Query: 583 SPVYLRDIWPKDSEIQSFV---NKYVTCDL-----YKKKYSDVFKGDSSWWNIEVPESET 634 V I P D I + V + + D Y +Y D GD+ W I T Sbjct: 486 GLVLFGFIPPDDPRILATVEAIERELLVDGGGIRRYNNEYDDGLGGDNGPWII------T 539 Query: 635 YMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAA 694 +W S Y + K + ++ A L LL +++ P G+ PL + A Sbjct: 540 TLW--LSEYYLALGRLDEAKKLLEWLLA--FASPLGLLPEQVDDGSGEPLGAFPLAWSHA 595 Query: 695 SYLR 698 ++ Sbjct: 596 EFII 599 >gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit. Length = 1070 Score = 28.3 bits (64), Expect = 9.9 Identities = 8/12 (66%), Positives = 11/12 (91%) Query: 873 IDTLDEINHLKN 884 + TLD+I+HLKN Sbjct: 300 MGTLDDIDHLKN 311 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0737 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 11,040,085 Number of extensions: 611238 Number of successful extensions: 1406 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1355 Number of HSP's successfully gapped: 42 Length of query: 896 Length of database: 6,263,737 Length adjustment: 103 Effective length of query: 793 Effective length of database: 4,038,010 Effective search space: 3202141930 Effective search space used: 3202141930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (27.6 bits)