RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(896 letters)
>gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 1620 bits (4198), Expect = 0.0
Identities = 559/892 (62%), Positives = 667/892 (74%), Gaps = 9/892 (1%)
Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63
S +SF R L VGG Y YYSL EA GL ISRLP S++VLLENLLR EDG +VT+E
Sbjct: 3 STDSFKARKTLEVGGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEE 62
Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123
I A +W K + E+ +R +RV+MQDFTGVPAVVDLAAMRDAI LGGDP INPL
Sbjct: 63 DIEALAEW-LPKAKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPL 121
Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183
VPVDLVIDHS+ VDY G DA +N +LE++RNEERY+FLKWGQK+F NFRVVPPGTGIC
Sbjct: 122 VPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGIC 181
Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243
HQ+NLEYL VWT+ E+GE +AYPDT VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG
Sbjct: 182 HQVNLEYLAPVVWTR-EDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240
Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303
P SML+PEVVG ++TG L EGVTATDLVLT+T+MLRK+GVV KFVEFFG G S+ LADR
Sbjct: 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADR 300
Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVA 363
ATIANMAPEYGATCGFFP+D T+DYLRL+GR +V LVEAY K QG+WR+ + E+
Sbjct: 301 ATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPL--EEPV 358
Query: 364 FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423
+T ++LDL V PS+AGP+RP+ R+ LS+V +F + + + +G D+
Sbjct: 359 YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDEAE---EGEDY 415
Query: 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYL 483
L G V IA+ITSCTNT NPSVMI AGLLA+ AV GLK KPWVKTS APGS+V +YL
Sbjct: 416 ELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYL 475
Query: 484 VQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543
+AGL+ YLEALGF+LVG+GCTTCIGNSG L EI + I+ LVV VLSGNRNFEGRI
Sbjct: 476 EKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRI 535
Query: 544 SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNK 603
P V+ANYL SPPLVVAYALAG V +L KDP+G D+ G+PVYL+DIWP D EI + V K
Sbjct: 536 HPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAK 595
Query: 604 YVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDI 663
V ++++K+Y+DVF+GD W IEVPE Y WD STY+RNPPYFE + + DI
Sbjct: 596 AVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDI 655
Query: 664 CGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRG 723
GAR+L LLGD ITTDHISPAG+I S A YL + GV+ KDFN +G+RRGNHEVMMRG
Sbjct: 656 KGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRG 715
Query: 724 TFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSS 783
TF+NIRI N M+ G +GGYT H+P E + IYDAAM+YK + PLVV AG EYG GSS
Sbjct: 716 TFANIRIRNEMVP--GVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSS 773
Query: 784 RDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK 843
RDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S K L + G E +I
Sbjct: 774 RDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEG 833
Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
L+ + P T+ I +DG P++C IDT E+++ +NGGILQ VLR L
Sbjct: 834 LEDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDL 885
>gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 1375 bits (3560), Expect = 0.0
Identities = 521/896 (58%), Positives = 645/896 (71%), Gaps = 14/896 (1%)
Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63
+ N VGG Y +YSLP ++RLP S++VLLENLLR EDG VT+E
Sbjct: 2 AHNLHKTLKEFDVGGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEE 61
Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123
+ A WL + E+ + +RV+MQDFTGVPA+VDLAAMRDA GGDP INPL
Sbjct: 62 HLEALANWLPE-RKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPL 120
Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183
VPVDLV+DHS+ VDY G KDA+ N +E+QRN ERY+FLKWG ++F NFRVVPPGTGI
Sbjct: 121 VPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIM 180
Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243
HQ+NLEYL + V TK ++G+ +AYPDT VGTDSHTTMIN +G+LGWGVGGIEAEA MLG
Sbjct: 181 HQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240
Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303
P+ ML+P+VVG E+TG L+EGVTATDLVLT+T+MLRKEGVV KFVEFFG G S+ L DR
Sbjct: 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDR 300
Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWR---EDIDYE 360
ATIANMAPEYGAT GFFPVD T+DYLRL+GR+ +++ LVEAY K QG+W + Y
Sbjct: 301 ATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYT 360
Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420
+ ++LDL V+PS+AGP+RP+ R++L V S+F ++ ++ K
Sbjct: 361 RT-----LELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF--AKKAQTS 413
Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480
L G VAIA+ITSCTNT NPSV+I AGLLA+ AV GL KPWVKTS APGS+V
Sbjct: 414 NGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVT 473
Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540
EYL +AGL+ YLE LGF +VG+GCTTCIGNSG L EI + I + LV A VLSGNRNFE
Sbjct: 474 EYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFE 533
Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600
GRI P+++AN+L SPPLVVAYALAG VR++L+ +P+G+ + G PVYL+DIWP +EI +
Sbjct: 534 GRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDAL 593
Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660
V V + ++K Y++VFKG W IE P+ Y WD KSTY+R PP+F+ I
Sbjct: 594 VAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGPAASI 653
Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720
+ GAR L +LGD ITTDHISPAG+I S A YL++ GV + DFN +G+RRGNHEVM
Sbjct: 654 ATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVM 713
Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780
MRGTF+N+RI N M+ GK+GG T+H PS E L IYDAAMRY+ PLVV AG EYG
Sbjct: 714 MRGTFANVRIKNLMIP--GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGT 771
Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840
GSSRDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S ++L + G E +
Sbjct: 772 GSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFD 831
Query: 841 IRKLKT-ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
I L I PRQ+ TL IH +DG+ + VP++C IDT E+++ K GGIL VLRQL
Sbjct: 832 IEGLPGEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQL 887
>gnl|CDD|162307 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes.
Length = 876
Score = 1245 bits (3223), Expect = 0.0
Identities = 518/879 (58%), Positives = 655/879 (74%), Gaps = 10/879 (1%)
Query: 21 YVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVES 80
Y YYSL E +G + IS+LP S+++LLE++LR DG ++T+E I +KW + ++
Sbjct: 3 YYYYSLKALEESGGK-ISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGE-VADT 60
Query: 81 EVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG 140
E++++ +RV+MQDFTGVPAVVDLAAMR+A+ LGGDP+ INPLVPVDLVIDHS+ VDY G
Sbjct: 61 EIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYG 120
Query: 141 NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNE 200
+ A+ N +LE++RN ERY+FLKW QK+F+NFRVVPPGTGI HQ+NLEYL V+
Sbjct: 121 TEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEV 180
Query: 201 NGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260
+GE AYPD+ VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG P M +PEV+G ++TG
Sbjct: 181 DGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGK 240
Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320
LQEGVTATDLVLT+TQMLRK+GVV KFVEFFG G + LADRATIANMAPEYGATCGFF
Sbjct: 241 LQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFF 300
Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380
P+D T+ YLRL+GR V+LVE Y + QG++ + D E+ +T ++LDL +V PSVA
Sbjct: 301 PIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYD--DSEEPRYTDVVELDLSDVEPSVA 358
Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVK----GCDFHLKHGDVAIASIT 436
GP+RP+ R+ L EV + F E+ + K P+K G + L+ G V IA+IT
Sbjct: 359 GPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAIT 418
Query: 437 SCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALG 496
SCTNT NPSVM+GAGLLA+ AV GLK P+VKTS APGS+V +YL ++GL+ YLE LG
Sbjct: 419 SCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELG 478
Query: 497 FSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPP 556
F+LVG+GCTTCIGNSG L K + E I + L V VLSGNRNFEGRI P V+ NYL SPP
Sbjct: 479 FNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPP 538
Query: 557 LVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSD 616
LVVAYALAGN+ NL +PIG D+ G PVYLRDIWP + EI ++VN V +++KK+Y +
Sbjct: 539 LVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYEN 598
Query: 617 VFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI 676
+F+G+ W +I+ P +TY WDEKSTY+R PP+FE + + E+ DI GARIL LLGD I
Sbjct: 599 IFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDSI 658
Query: 677 TTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLG 736
TTDHISPAGSI S A YL++RGV +DFN +G+RRGNHEVMMRGTF+NIRI N M+
Sbjct: 659 TTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV- 717
Query: 737 EEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796
+GK+GGYT+H+P + +YDAAM+YK + PLVV AG EYG+GSSRDWAAKGT+LLGV
Sbjct: 718 -KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGV 776
Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856
++VIAESFERIHRSNL+GMGVIP F +G + L + GDE I+I +K + P +E T+
Sbjct: 777 KAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVT 836
Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
S G + IDT E+++ K+GGILQ VLR+
Sbjct: 837 FTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKF 875
>gnl|CDD|185440 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 1211 bits (3134), Expect = 0.0
Identities = 486/909 (53%), Positives = 626/909 (68%), Gaps = 36/909 (3%)
Query: 1 MSRSLNSFN-CRSILSVGGIDYVYYSLPKAEANGLQG--ISRLPCSMKVLLENLLRFEDG 57
S N F L GG Y YYSL + L + +LP S++VLLE+ +R D
Sbjct: 9 SSSRPNPFEKVLKTLKDGG-SYKYYSLNE-----LHDPRLKKLPYSIRVLLESAVRNCDE 62
Query: 58 CTVTKEQIHAFVKWLDN--KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGG 115
VT + + + W +N K E+ ++ +RVL+QDFTGVPAVVDLAAMRDA+ LGG
Sbjct: 63 FDVTSKDVENILNWEENSKKQI---EIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGG 119
Query: 116 DPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV 175
DP INPLVPVDLVIDHS+ VD+S + DA+ N+++E++RN ER+ FLKWG K+FKN +
Sbjct: 120 DPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLI 179
Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235
VPPG+GI HQ+NLEYL + V+ K+ + YPD+ VGTDSHTTMIN LG+LGWGVGGIE
Sbjct: 180 VPPGSGIVHQVNLEYLARVVFNKD----GLLYPDSVVGTDSHTTMINGLGVLGWGVGGIE 235
Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295
AEA MLG PISM+LPEVVGF++TG L E VTATDLVLT+T MLRK GVV KFVEF+G G
Sbjct: 236 AEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGV 295
Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355
+++ LADRATIANMAPEYGAT GFFP+D T+DYL+ +GRS +V+L+E Y K G++R
Sbjct: 296 KTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT 355
Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN--------EYYK 407
E++ ++ ++LDL V PSVAGP+RP R+ LS++ F ++ +
Sbjct: 356 Y--AEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPE 413
Query: 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467
+ H K+ KG ++ L HG V IA+ITSCTNT NPSVM+ AGLLA+ AV GLK P+
Sbjct: 414 EKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPY 473
Query: 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSL 527
+KTS +PGS+V +YL +GL++YLE LGF G+GC TCIGNSG L E+SE I L
Sbjct: 474 IKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDL 533
Query: 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587
V A VLSGNRNFEGR+ P ANYL SPPLVVAYALAG V + +P+G D+ G PV+L
Sbjct: 534 VAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFL 593
Query: 588 RDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647
RDIWP EIQ+ KYV +++K+ YS++ +G+ W ++VP+ + Y WDEKSTY+ NP
Sbjct: 594 RDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNP 653
Query: 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDF 707
P+F+T+ P I I A L LGD ITTDHISPAG+I S AA YL +RGV+ KDF
Sbjct: 654 PFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDF 713
Query: 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQ 767
N +G RRGN EVM+RGTF+NIR+ N + GK G T+H P+ E++ IYDAA +YK +
Sbjct: 714 NTYGARRGNDEVMVRGTFANIRLINKLC---GKVGPNTVHVPTGEKMSIYDAAEKYKQEG 770
Query: 768 VPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGIS 827
VPL+V AG EYG+GSSRDWAAKG L GV++VIAESFERIHRSNL+GMG++P F G +
Sbjct: 771 VPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGEN 830
Query: 828 WKNLNIKGDEIINIR-KLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGG 886
+L + G E +I + P Q+ + + G K I IDT E+ + K+GG
Sbjct: 831 ADSLGLTGKEQFSIDLNSGELKPGQD--VTVKTDTG--KTFDTILRIDTEVEVEYFKHGG 886
Query: 887 ILQAVLRQL 895
ILQ VLR+L
Sbjct: 887 ILQYVLRKL 895
>gnl|CDD|177699 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 1038 bits (2685), Expect = 0.0
Identities = 459/890 (51%), Positives = 601/890 (67%), Gaps = 34/890 (3%)
Query: 23 YYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82
YYSLP A I +LP S+++LLE+ +R D VTKE + + W +N + E+
Sbjct: 63 YYSLP---ALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDW-ENTSPKQVEI 118
Query: 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNK 142
++ +RVL+QDFTGVPAVVDLA MRDA+ LGGDP INPLVPVDLVIDHS+ VD + ++
Sbjct: 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSE 178
Query: 143 DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202
+AV N +LE+QRN+ER+ FLKWG +F+N VVPPG+GI HQ+NLEYLG+ V+ N
Sbjct: 179 NAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVF----NT 234
Query: 203 ENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQ 262
+ I YPD+ VGTDSHTTMI+ LG+ GWGVGGIEAEAAMLG P+SM+LP VVGF+++G L+
Sbjct: 235 DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 294
Query: 263 EGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322
+GVTATDLVLT+TQMLRK GVV KFVEF+G G + LADRATIANM+PEYGAT GFFPV
Sbjct: 295 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 354
Query: 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKV----AFTKKMKLDLGNVSPS 378
D T+ YL+L+GRS+ V ++EAY + M+ +DY + ++ ++LDL +V P
Sbjct: 355 DHVTLQYLKLTGRSDETVAMIEAYLRANKMF---VDYNEPQQERVYSSYLELDLEDVEPC 411
Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFHLKHGDV 430
++GP+RP R+ L E+ + + + ++ K++ + K+ G L+HG V
Sbjct: 412 ISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSV 471
Query: 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE 490
IA+ITSCTNT NPSVM+GAGL+A+ A GL+ KPW+KTS APGS V +YL+++GL +
Sbjct: 472 VIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQK 531
Query: 491 YLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEAN 550
YL GF +VG+GCTTCIGNSG L + ++ I + +V A VLSGNRNFEGR+ P AN
Sbjct: 532 YLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRAN 591
Query: 551 YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLY 610
YL SPPLVVAYALAG V + K+PIG + G V+ RDIWP + E+ V V D++
Sbjct: 592 YLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMF 651
Query: 611 KKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILC 670
K Y + KG+ W + VP Y WD KSTY+ PPYF+ ++ P + A L
Sbjct: 652 KSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLL 711
Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730
GD ITTDHISPAGSI S AA YL +RGV KDFN +G+RRGN E+M RGTF+NIRI
Sbjct: 712 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRI 771
Query: 731 CNYML-GEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789
N +L GE G K T+H P+ E+L ++DAAM+YK + ++ AG EYG+GSSRDWAAK
Sbjct: 772 VNKLLKGEVGPK---TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAK 828
Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR---KLKT 846
G LLGV++VIA+SFERIHRSNL+GMG+IP F G L + G E I +
Sbjct: 829 GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISE 888
Query: 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
I P Q+ T+ + +F C DT E+ + +GGIL V+R L
Sbjct: 889 IKPGQDVTVTTD-NGKSFTCT---LRFDTEVELAYFDHGGILPYVIRNLI 934
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PubMed:12473114).
Length = 858
Score = 778 bits (2009), Expect = 0.0
Identities = 379/880 (43%), Positives = 533/880 (60%), Gaps = 47/880 (5%)
Query: 18 GIDYVYYSLPKA-EANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG 76
G D Y+ A EA +LP + ++L ENL+R E + A + +
Sbjct: 10 GTDLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVR-----RCDPETLSASLLQI---- 60
Query: 77 TVESEVSYRF----SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132
+E + F +RV+ D G A+VDLA +RDAI GGDP +NP+VP L++DH
Sbjct: 61 -IERKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDH 119
Query: 133 SLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYL 191
SL V+Y G + DA +N+ +E +RNE+R+ F+ W + +FKN V+P G GI HQINLE +
Sbjct: 120 SLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKM 179
Query: 192 GQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPE 251
+ KN +A+PDTCVGTDSHT ++ALG++ GVGG+EAE MLG M LP+
Sbjct: 180 SPVIQVKN----GVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPD 235
Query: 252 VVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAP 311
+VG E+TG Q G+TATD+VL +T+ LRKE VVS ++EFFG G ++ + DRATI+NM P
Sbjct: 236 IVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTP 295
Query: 312 EYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371
EYGAT F +D TIDYL+L+GR +V LVE Y K G+W + + + + + ++ D
Sbjct: 296 EYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSL--KHAVYERVLEFD 353
Query: 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVA 431
L +V ++AGP P +R+ S++ + + ++ L + G V
Sbjct: 354 LSSVVRNMAGPSNPHARVPTSDLAARGIA--GPAEEQPEGL------------MPDGAVI 399
Query: 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEY 491
IA+ITSCTNT NP ++ AGLLARNA + GLK KPWVKTS APGS+V+ YL +AGL+
Sbjct: 400 IAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPE 459
Query: 492 LEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANY 551
LE LGF +V F CTTC G SGAL I + I + L VLSGNRNF+GRI P + +
Sbjct: 460 LEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAF 519
Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611
L SPPLVVAYA+AG +R ++ KD +G D G P+ L+DIWP D EI + V V + ++
Sbjct: 520 LASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFR 579
Query: 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671
K Y +F D + + S Y W STY+R PPY+E + + G R L +
Sbjct: 580 KVYIPMFDLDDT----QSAVSPLYDWRPMSTYIRRPPYWEGA---LAGERTLKGMRPLAI 632
Query: 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRIC 731
LGD ITTDH+SP+ +I SAA YL + G+ E+DFN + T RG+H R TF+N ++
Sbjct: 633 LGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLF 692
Query: 732 NYMLGEEG--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789
N M+ +G K+G P + +++A Y + PL++ AG +YG GSSRDWAAK
Sbjct: 693 NEMVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAK 752
Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849
G RL GV +++AE FERIHR+NL+GMGV+P F G + L + G E ++ + I+P
Sbjct: 753 GVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDV--VGEITP 810
Query: 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889
R + TL + +G VP+ C +DT +E++ + GG+LQ
Sbjct: 811 RADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQ 850
>gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 255 bits (654), Expect = 4e-68
Identities = 222/843 (26%), Positives = 331/843 (39%), Gaps = 248/843 (29%)
Query: 80 SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLIV 136
E++ R + L QD TG A + AM G + V +L +DH+L+
Sbjct: 23 EEIAIRIDQTLTQDATGTMAYLQFEAM--------GLDR-----VKTELSVQYVDHNLLQ 69
Query: 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQS 194
+ + N + +RFL Q + + PG GICHQ++LE
Sbjct: 70 --ADFE-------------NADDHRFL---QSVAAKYGIYFSKPGNGICHQVHLE----- 106
Query: 195 VWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253
A+P T +G+DSHT LG+L G GG++ AM G P + +P+VV
Sbjct: 107 ---------RFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVV 157
Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMA 310
G ++TG L V+A D++L +LR+ V V K +E+FG G ++ + +RATI NM
Sbjct: 158 GVKLTGKLPPWVSAKDVILE---LLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMG 214
Query: 311 PEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370
E GAT FP D T ++L+ GR + + ++ D +Y++V +++
Sbjct: 215 AELGATTSIFPSDERTREFLKAQGRE-------DDWVELLA--DPDAEYDEV-----IEI 260
Query: 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430
DL + P +AGP H+ D PV + V
Sbjct: 261 DLSELEPLIAGP---------------------------HSPDNVVPVS----EVAGIKV 289
Query: 431 AIASITSCTNTFNPS---VMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487
I SCT N S +M A +L G K P V PGS+ E L + G
Sbjct: 290 DQVLIGSCT---NSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDG 340
Query: 488 LVEYLEALGFSLVGFGCTTCIGNSGALK-KEISEVIHQKSLVVAGVLSGNRNFEGRISPD 546
+ L A G ++ C CIG A +S + + NRNF GR S
Sbjct: 341 ALADLIAAGARILENACGPCIGMGQAPATGNVS------------LRTFNRNFPGR-SGT 387
Query: 547 VEAN-YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV---N 602
+A YL SP A AL G I DP + +PK E + F
Sbjct: 388 KDAQVYLASPETAAASALTGV-----ITDPRTLALENGE------YPKLEEPEGFAVDDA 436
Query: 603 KYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP-----PYFETISKHI 657
+ D S ++EV VR P P E +
Sbjct: 437 GIIAP-----------AEDGS--DVEV--------------VRGPNIKPLPLLEP----L 465
Query: 658 PEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNH 717
P++++ ++L +GD ITTDHI PAG A +L R
Sbjct: 466 PDLLE---GKVLLKVGDNITTDHIMPAG--------AKWLPYR----------------- 497
Query: 718 EVMMRGTFSNI-RICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGV 776
SNI I ++ E R K +Q +V G
Sbjct: 498 --------SNIPNISEFVF-----------------EGVDNTFPERAK-EQGGGIVVGGE 531
Query: 777 EYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLN---- 832
YG GSSR+ AA R LGV++V+A+SF RIH++NLI G++P F +
Sbjct: 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTF------ADPADYDK 585
Query: 833 IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892
I+ +++ I L+ P T+ D + + + +I L GG L +
Sbjct: 586 IEEGDVLEIEDLREFLPGGPLTVVNVTKDEEIEVRHTL----SERQIEILLAGGALNLIK 641
Query: 893 RQL 895
++L
Sbjct: 642 KKL 644
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized.
Length = 658
Score = 226 bits (578), Expect = 1e-59
Identities = 185/720 (25%), Positives = 273/720 (37%), Gaps = 179/720 (24%)
Query: 155 RNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVG 213
+N + ++FL F + PG GICH ++ E N A P T +G
Sbjct: 70 KNADDHKFLMSAAGKFGAW-FSKPGNGICHNVHKE--------------NFAAPGKTLLG 114
Query: 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273
+DSHT LG+L G GGI+ AAM G + +PE+VG + G L E TA D++L
Sbjct: 115 SDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILE 174
Query: 274 ITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLS 333
+ + L +G + K E+FG G E + + +RATI NM E GAT FP D T +L
Sbjct: 175 LLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAF 234
Query: 334 GRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE 393
R + VDL D D E + ++++DL ++ P +A P P++ + + E
Sbjct: 235 DREDDFVDL-----------LADADAE---YADEIEIDLSDLEPLIAEPHMPDNVVPVRE 280
Query: 394 VPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453
+ V ++ I SCTN ++ A LL
Sbjct: 281 IAGIEVDQV-------------------------------MIGSCTNGAFEDLLPAAKLL 309
Query: 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513
G + + + APGS+ + E + Q G + A G + + C CIG
Sbjct: 310 ------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIG---- 359
Query: 514 LKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573
+ + + S NRNFEGR + YL SP A A+AG I
Sbjct: 360 -------IGFAPASDGVSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGE-----II 407
Query: 574 DPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633
DP + +D +GD E+ E
Sbjct: 408 DP------------------------------------RDLADD-EGDLEAIGFEMGEKF 430
Query: 634 TYMWDEKSTYVRNP-----------PYFETISKHIPEIVDICGARILCLLGDKITTDHIS 682
+D + P + + + P DI G ++ D ITTDHI
Sbjct: 431 PGGYDAADIDIIPKEEREDDDIIKGPNIKPLPEFDPLGADIEG-ETALIMEDNITTDHII 489
Query: 683 PAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG 742
PAG+ L+ R SNI + E
Sbjct: 490 PAGADILK------FR---------------------------SNI----EAISE----- 507
Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802
+T+H E + A ++ AG YG GSSR+ AA LGV +VIA+
Sbjct: 508 -FTLHRIDDE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAK 563
Query: 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDG 862
SF RIH +NL G++P F + + GD+I L E I+ +D
Sbjct: 564 SFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDDIEIPDDLAAALADGEDEFTINKNDD 622
>gnl|CDD|162306 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase.
Length = 745
Score = 225 bits (574), Expect = 5e-59
Identities = 214/807 (26%), Positives = 322/807 (39%), Gaps = 179/807 (22%)
Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147
RV MQD + A++ G PQ VP + DH LIV G + R
Sbjct: 58 RVAMQDASAQMALLQFMT--------CGLPQ---VAVPASIHCDH-LIVGQKGGDKDLAR 105
Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207
N+E + FL+ K + PG+GI HQI LE N A+
Sbjct: 106 AIAT----NKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE--------------NYAF 146
Query: 208 PD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266
P +GTDSHT LG + GVGG +A A+ G P + P+++G ++TG L +
Sbjct: 147 PGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTS 206
Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326
D++L + +L G VE+FG G ES+ ATI NM E GAT FP +
Sbjct: 207 PKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAM 266
Query: 327 IDYLRLSGRSNSRVDL-VEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385
YL+ + R+ D Y+ + E Y+++ +++DL + P + GP P
Sbjct: 267 SRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDEL-----IEIDLSKLEPHINGPFTP 321
Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445
+ +S+ +K++ +P K ++ I SCTN+ +
Sbjct: 322 DLSTPISK------------FKET-VQKNGWPEK----------LSAGLIGSCTNS-SYE 357
Query: 446 VMIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504
M + ++A +AGLK K P+ T PGS+ L + G+++ E G ++ C
Sbjct: 358 DMSRCASIVKDAEQAGLKPKSPFYVT---PGSEQIRATLERDGILQTFEKFGGIVLANAC 414
Query: 505 TTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVVA 560
CIG +KK I + S NRNF GR + N+L SP +V A
Sbjct: 415 GPCIGQWDRKDDVKKGEPNTI---------LTSYNRNFRGRNDGNPATMNFLASPEIVTA 465
Query: 561 YALAGNVRKN----LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS- 615
+ AG++ N + P G++ + PK E L +K +
Sbjct: 466 MSYAGSLTFNPLTDSLTTPDGKEFKFPA-------PKGDE------------LPEKGFEA 506
Query: 616 --DVFKG--DSSWWNIEV---PESETYM-------WDEKSTYVRNPPYFETISKHIPEIV 661
D F+ S N+EV P S+ W+ K
Sbjct: 507 GRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWNGK--------------------- 545
Query: 662 DICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG----VKEKDFNQFGTRRGNH 717
D+ G R+L + K TTDHIS AG +L+ +G +
Sbjct: 546 DLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKGHLDNISNNTLIG-AVNAETG 595
Query: 718 EVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVE 777
EV N +G KG I + A +K P VV A
Sbjct: 596 EV------------NKAYDLDGSKGT------------IPELARDWKARGQPWVVVAEHN 631
Query: 778 YGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE 837
YG GS+R+ AA R LG R +I +SF RIH +NL GV+P F + + GDE
Sbjct: 632 YGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PGDE 690
Query: 838 I--INIRKLKTISPRQESTLEIHYSDG 862
+ +N+ ++ E L + +G
Sbjct: 691 VATLNLYEMLKNGGGGEVDLRVTKKNG 717
>gnl|CDD|179006 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 154 bits (392), Expect = 9e-38
Identities = 136/493 (27%), Positives = 191/493 (38%), Gaps = 130/493 (26%)
Query: 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRN 148
V+ D TG A+ DP I +V DH
Sbjct: 31 VMAHDITGPLAI---KEFEKIGGDKVFDPSKIV------IVFDH------------FVPA 69
Query: 149 KDLEYQRNEERYRFL-KWGQK-SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIA 206
KD ++ E+ + L ++ ++ NF V G GICHQ+ E + +
Sbjct: 70 KD---IKSAEQQKILREFAKEQGIPNFFDV--GEGICHQVLPE-------------KGLV 111
Query: 207 YP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGV 265
P D VG DSHT ALG G+G + AAM +PE + + G L GV
Sbjct: 112 RPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGV 171
Query: 266 TATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325
TA D++L I + +G K +EF G E++ + +R T+ANMA E GA G F D
Sbjct: 172 TAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEK 231
Query: 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385
T++YL+ R+ ++ ED +YE+V ++DL + P VA P P
Sbjct: 232 TLEYLK--ERAGRDYKPWKSD--------EDAEYEEV-----YEIDLSKLEPQVAAPHLP 276
Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445
++ +SEV E V D I SCTN
Sbjct: 277 DNVKPVSEV-------------------EGTKV----------DQVF--IGSCTN----- 300
Query: 446 VMIGAGLLA--RNAVR--AGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501
G L R A G K P V+ P SQ Y ++ GL+E G +
Sbjct: 301 -----GRLEDLRIAAEILKGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVST 355
Query: 502 FGCTTCIGNSGALKKEISEVIHQKSLVVAGVL--------SGNRNFEGRI-SPDVEANYL 552
C C+G H GVL + NRNF+GR+ SP+ E YL
Sbjct: 356 PTCGPCLG------------GHM------GVLAPGEVCLSTTNRNFKGRMGSPESEV-YL 396
Query: 553 LSPPLVVAYALAG 565
SP + A A+ G
Sbjct: 397 ASPAVAAASAVTG 409
>gnl|CDD|162691 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 149 bits (378), Expect = 3e-36
Identities = 111/395 (28%), Positives = 160/395 (40%), Gaps = 80/395 (20%)
Query: 174 RVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVG 232
V G GICHQ+ +E E A P VG DSHT A+G G+G
Sbjct: 88 PVFDVGEGICHQVLVE-------------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMG 134
Query: 233 GIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292
+ A+ + +PE + V G +EGVTA D+ L I L +G +EFFG
Sbjct: 135 ATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFG 194
Query: 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352
E+M + +R T+ NMA E GA G D T +YL+ R+
Sbjct: 195 LPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRP--------- 245
Query: 353 WREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTL 412
Y+ +++DL ++ P VA P ++ +S+V TE+++ +
Sbjct: 246 -DPGAKYDDE-----IEIDLSDLEPLVAVPHSVDNVRPVSDVEG---TEIDQVF------ 290
Query: 413 DEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSC 472
I SCTN + I A +L G + P V+
Sbjct: 291 ----------------------IGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIV 322
Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAG 531
P S+ YE ++ G++ L G + GC C+G + G L EV
Sbjct: 323 VPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLGD--GEVC--------- 371
Query: 532 VLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565
V + NRNF GR+ SPD E YL SP A A+ G
Sbjct: 372 VSTTNRNFRGRMGSPDAEI-YLASPATAAASAVEG 405
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 134 bits (338), Expect = 1e-31
Identities = 108/405 (26%), Positives = 158/405 (39%), Gaps = 102/405 (25%)
Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIE 235
G GICHQ+ E E + P D VG DSHT ALG G+G +
Sbjct: 92 DVGEGICHQVLPE-------------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTD 138
Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295
A+ +PE + +TG L GVTA D++L + + +G +EF G
Sbjct: 139 IAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETI 198
Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355
++M + +R T+ANMA E G G D T YL+ + E + + E
Sbjct: 199 KNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYK--------EPFRVYKS--DE 248
Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415
D +Y K +++D + P VA P ++ +SEV E+++ +
Sbjct: 249 DAEYAKE-----VEIDASQLEPVVAAPHNVDNVHPVSEVEG---IEVDQVF--------- 291
Query: 416 YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA--RNAVR--AGLKSKPWVKTS 471
I SCTN G + R A + G K P V+
Sbjct: 292 -------------------IGSCTN----------GRIEDLRVAAKILKGRKVAPDVRLI 322
Query: 472 CAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG 531
P S+ Y ++ GL+E G + GC C+G HQ G
Sbjct: 323 VIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLG------------RHQ------G 364
Query: 532 VL--------SGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567
VL + NRNF+GR+ P+ E YL SP A A+ G +
Sbjct: 365 VLAPGEVCISTSNRNFKGRMGDPNAEI-YLASPATAAASAVKGRI 408
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
This model along with TIGR00170 describe clades which
consist only of LeuC sequences. Here, the genes from
Pyrococcus furiosus, Clostridium acetobutylicum,
Thermotoga maritima and others are gene clustered with
related genes from the leucine biosynthesis pathway.
Length = 419
Score = 133 bits (336), Expect = 2e-31
Identities = 110/365 (30%), Positives = 155/365 (42%), Gaps = 63/365 (17%)
Query: 203 ENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261
E I P D +G DSHT ALG GVG + M +PE + F + G L
Sbjct: 108 EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKL 167
Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321
+ VT DL+L I ++ +G + K +EF G G + + + DR TIANMA E GA G FP
Sbjct: 168 KPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFP 227
Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381
VD TI+Y + GR + +A ED Y +V +++DL + P VA
Sbjct: 228 VDEITIEYEK--GRGKREEKIYKA--------DEDAKYVRV-----IEIDLSELEPQVAF 272
Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441
P PE+ +SE K +K + I SCTN
Sbjct: 273 PHLPENTKDISEA-------------------GKEEIK----------IDQVVIGSCTNG 303
Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE-YLEALGFSLV 500
+ + A +L G P V+ PGSQ Y ++ GL+E ++EA G +
Sbjct: 304 RLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEA-GAVVS 356
Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVA 560
C C+G + E E + + NRNF GR+ YL SP + A
Sbjct: 357 TPTCGPCLGGHMGILAE-GER---------AISTTNRNFVGRMGHPKSEVYLASPAVAAA 406
Query: 561 YALAG 565
A+ G
Sbjct: 407 SAIKG 411
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 119 bits (300), Expect = 4e-27
Identities = 118/433 (27%), Positives = 163/433 (37%), Gaps = 88/433 (20%)
Query: 171 KNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGW 229
+ F V P GI H + E LG + P V DSHTT ALG L +
Sbjct: 98 RLFDVDDPRQGIVHVVAPE-LG------------LTLPGMVIVCGDSHTTTYGALGALAF 144
Query: 230 GVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289
G+G E E + + P+ + V G L GVTA DL+L + + +G +E
Sbjct: 145 GIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIE 204
Query: 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGR----SNSRVDLVEA 345
F G ++ + R T+ NMA E GA G D T DYLR GR + D A
Sbjct: 205 FAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLR--GRPRAPKGALWDAALA 262
Query: 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE-VPSSFVTEMNE 404
Y WR F +++++D +++P V P+ + ++ VP
Sbjct: 263 Y------WRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP--------- 307
Query: 405 YYKKSHTLDEKYPVKGCDF-------HLKHG----DVAI--ASITSCTNTFNPSVMIGAG 451
E P + L G + I I SCTN G
Sbjct: 308 -----DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTN----------G 352
Query: 452 ----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507
L A AV G K P V+ PGS GL A GF GC+ C
Sbjct: 353 RIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMC 412
Query: 508 IGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564
+ + ++ G + NRNFEGR P +L+SP +V A A+A
Sbjct: 413 LAMND-------------DVLAPGERCASTTNRNFEGRQGPGART-HLMSPAMVAAAAVA 458
Query: 565 G---NVRKNLIKD 574
G +VR L
Sbjct: 459 GHITDVRSLLQAG 471
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase, aconitase,
and 3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain.
Length = 712
Score = 109 bits (274), Expect = 3e-24
Identities = 109/410 (26%), Positives = 165/410 (40%), Gaps = 73/410 (17%)
Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235
P G GI HQI +E E A+P V +DSH+ M LG LG + +
Sbjct: 97 PAGRGIGHQIMIE-------------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTD 143
Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG- 294
A A +P V E G L GV+ D+++ + + K+ V++ +EF GS
Sbjct: 144 AAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSED 203
Query: 295 -FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR----------LSGRSNSRVDLV 343
++ + R TIANM E+GA G FP+D+ ID+L+ G +
Sbjct: 204 SLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAER 263
Query: 344 EAYTKVQGMWREDIDYEKVA-FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402
+ ++ + +K A + K++ +DL ++S V+GP
Sbjct: 264 FTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNS------------------ 305
Query: 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRA 460
K ++ L + L+ D+ I A + SCTN+ + A + A +
Sbjct: 306 ---VKVANPLKD----------LEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKN 352
Query: 461 GLKSK---PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKE 517
G K P V+ A S G E L G + GC CIG L E
Sbjct: 353 GGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGLL-E 411
Query: 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567
EV G+ + NRNF+GR+ YL SP +V A AL G +
Sbjct: 412 PGEV---------GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452
>gnl|CDD|161741 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are now
described by a separate model of subfamily (rather than
equivalog) homology type, and the priors and cutoffs for
this model have been changed to focus this equivalog
family more narrowly.
Length = 465
Score = 104 bits (260), Expect = 1e-22
Identities = 97/359 (27%), Positives = 142/359 (39%), Gaps = 27/359 (7%)
Query: 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATD 269
T V DSHT+ A G L +G+G E E + + + + EV G L G+TA D
Sbjct: 123 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182
Query: 270 LVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDY 329
++L I G +EF G + + R T+ NMA E GA G D T +Y
Sbjct: 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEY 242
Query: 330 LRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRL 389
+ GR ++ + + K W+ E F + L+ ++SP V P L
Sbjct: 243 CK--GRPHAPKG--KEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVL 298
Query: 390 SL-SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIAS--ITSCTNTFNPSV 446
+ SEVP + K+ + + G + D+ + I SCTN S
Sbjct: 299 PVNSEVPDP--ESFADPVDKA-SAERALAYMGLEPGTPLKDIKVDKVFIGSCTN----SR 351
Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506
+ L A AV G K VK PGS + + GL + GF GC+
Sbjct: 352 I--EDLRAAAAVIKGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSM 409
Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565
C+G + E + NRNFEGR +L+SP + A A+ G
Sbjct: 410 CLGMNNDRLPEGERCAS----------TSNRNFEGRQGRGGR-THLVSPAMAAAAAIHG 457
>gnl|CDD|180112 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 83.6 bits (208), Expect = 2e-16
Identities = 110/388 (28%), Positives = 151/388 (38%), Gaps = 84/388 (21%)
Query: 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTI 274
DSHT+ A G L +G+G E E + + P+ + EV G L GVTA D++L I
Sbjct: 128 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAI 187
Query: 275 TQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331
+ K G +EF G ++ + R TI NM+ E GA G D T +YL+
Sbjct: 188 ---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLK 244
Query: 332 LSGRSNSRVDLVEAYTKVQGMWR-----EDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386
GR + E + K W+ ED ++KV + LD ++ P V P
Sbjct: 245 --GRPFAPKG--EDWDKAVAYWKTLKSDEDAVFDKV-----VTLDAADIEPQVTWGTNPG 295
Query: 387 SRLSLSEV---PSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHG----DVAI--ASITS 437
+S+ P F + K + + G LK G D+ I I S
Sbjct: 296 QVISIDGKVPDPEDFADPV-----KRASAERALAYMG----LKPGTPITDIKIDKVFIGS 346
Query: 438 CTNTFNPSVMIGAG----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV--QA---GL 488
CTN L A AV G K P V+ PGS LV QA GL
Sbjct: 347 CTN----------SRIEDLRAAAAVVKGRKVAPGVRALVVPGSG-----LVKAQAEAEGL 391
Query: 489 VEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSG---NRNFEGRIS 544
+ GF GC+ C+ N L G NRNFEGR
Sbjct: 392 DKIFIEAGFEWREPGCSMCLAMNPDKLP--------------PGERCASTSNRNFEGRQG 437
Query: 545 PDVEANYLLSPPLVVAYALAG---NVRK 569
+L+SP + A A+ G +VR+
Sbjct: 438 KGGR-THLVSPAMAAAAAITGHFVDVRE 464
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 58.5 bits (142), Expect = 8e-09
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 35/214 (16%)
Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235
VPP + HQ E + G+ I +G+DSHT ALG + G GG E
Sbjct: 123 VPPHIAVIHQYMREMMAGG-------GKMI------LGSDSHTRY-GALGTMAVGEGGGE 168
Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSG 294
+L + P VV +TG GV D+ L I + K G V +K +EF G G
Sbjct: 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPG 228
Query: 295 FESMVLADRATIANMAPEYGATC--GFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352
++ R + M E TC + D ++L L GR + Y +
Sbjct: 229 VSALSTDFRNGVDVMTTE--TTCLSSIWQTDEEVHNWLALHGRG-------QDYCE---- 275
Query: 353 WREDIDYEKVAFTKKM-KLDLGNVSPSVAGPRRP 385
++ + +A+ +DL + P +A P P
Sbjct: 276 ----LNPQPMAYYDGCISVDLSAIKPMIALPFHP 305
Score = 36.9 bits (86), Expect = 0.026
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPF 820
+V+A V+ G+GS+R+ AA R+LG + IAE + + +RSN+I G++PF
Sbjct: 631 MVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPF 680
>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit;
Provisional.
Length = 166
Score = 52.9 bits (127), Expect = 3e-07
Identities = 20/50 (40%), Positives = 36/50 (72%)
Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPF 820
++ AG +G GSSR++A + ++LG+ ++IA+S+ RI NL+ +G+ PF
Sbjct: 52 ILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPF 101
>gnl|CDD|162692 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
This subfamily is most closely related to the
3-isopropylmalate dehydratase, small subunits which form
TIGR00171. This subfamily includes the members of
TIGR02084 which are gene clustered with other genes of
leucine biosynthesis. The rest of the subfamily includes
mainly archaeal species which exhibit two hits to this
model. In these cases it is possible that one or the
other of the hits does not have a 3-isopropylmalate
dehydratase activity but rather one of the other related
aconitase-like activities.
Length = 154
Score = 52.8 bits (127), Expect = 4e-07
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830
V+ AG +G GSSR+ AA + G+ +VIAESF RI N I +G+ +
Sbjct: 50 VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLI-----EAKTE 104
Query: 831 LNIKGDEI-INIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889
GDE+ +++ + E +K P+ D L EI L+ GG+L+
Sbjct: 105 GIKDGDEVTVDLETGEIRVNGNE----------EYKGEPL---PDFLLEI--LREGGLLE 149
Query: 890 AVLR 893
+ +
Sbjct: 150 YLKK 153
>gnl|CDD|179025 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
Reviewed.
Length = 163
Score = 49.1 bits (118), Expect = 6e-06
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWK- 829
++ AG +G GSSR+ A + GV +VIA+SF RI N I +G +P K
Sbjct: 51 IIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECDEAVDKI 109
Query: 830 ------NLNIKGDEIINIRKLKTIS--PRQESTLEI 857
++++ I N+ + P E LEI
Sbjct: 110 EDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEI 145
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria.
Length = 844
Score = 43.7 bits (103), Expect = 2e-04
Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 89/390 (22%)
Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264
PDT VGT DSHT LGI G+ A AA G P+ M PE V G +Q G
Sbjct: 479 PDT-VGTGGDSHTRF--PLGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPG 533
Query: 265 VTATDLVLTITQMLRKEGVVS-----KFVEFFGSGFESMVLADRAT-----IANMAPEYG 314
+T DLV I K+G+++ K F G E L D + + + E
Sbjct: 534 ITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIEGLPDLKVEQAFELTDASAERS 593
Query: 315 ATCGFFPVDRGT-IDYLR----------LSGRSNS-----RVDLVEAYTKVQGMWREDID 358
A +++ I+YL G + R+ +E + + D D
Sbjct: 594 AAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADAD 653
Query: 359 YEKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYP 417
E A +++DL + P +A P P+ LSEV + +DE +
Sbjct: 654 AEYAAV---IEIDLAEIKEPILAAPNDPDDVRPLSEV-------------QGDKIDEVF- 696
Query: 418 VKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQ 477
I SC N AG + A L ++ WV AP ++
Sbjct: 697 -----------------IGSCMT--NIGHFRAAGKILDAA--GQLPTRLWV----APPTR 731
Query: 478 VSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537
+ + L + G A G GC+ C+GN + + V + + R
Sbjct: 732 MDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVADGAT--------VFS---TSTR 780
Query: 538 NFEGRISPDVEANYLLSPPLVVAYALAGNV 567
NF R+ YL S L AL G +
Sbjct: 781 NFPNRMGTGANV-YLGSAELAAVCALLGKI 809
Score = 31.4 bits (71), Expect = 1.1
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 46 VLLENLLR--FEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDL 103
VLL+ ++ + D T+ + +I KWL N +E++ ++ V+ +DL
Sbjct: 615 VLLKWMIAEGYGDRRTL-ERRIQGMEKWLANPELLEADADAEYAAVIE---------IDL 664
Query: 104 AAMRDAIVVLGGDPQNINPLVPV 126
A +++ I+ DP ++ PL V
Sbjct: 665 AEIKEPILAAPNDPDDVRPLSEV 687
>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional.
Length = 119
Score = 43.2 bits (101), Expect = 3e-04
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK-GDEI- 838
GSSR+ AA G + VIA SF IH +N + G++P + + K +K D++
Sbjct: 3 GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVT 62
Query: 839 INIRKLKTISPRQESTLEI 857
+++ + K ISP +E T EI
Sbjct: 63 VDLEQQKIISPVEEFTFEI 81
>gnl|CDD|181718 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 42.5 bits (101), Expect = 5e-04
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 208 PDTCVGT--DSHTTMINALGILGWGVG-GIEAEAAMLG-CPISMLLPEVVGFEVTGSLQE 263
PDT VGT DSHT +GI + G G+ A AA G P+ M PE V G +Q
Sbjct: 478 PDT-VGTGGDSHTRF--PIGI-SFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQP 531
Query: 264 GVTATDLVLTI-TQMLRK 280
G+T DLV I +++
Sbjct: 532 GITLRDLVHAIPYYAIKQ 549
>gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The members of the seed for
this model are those sequences which are gene clustered
with other genes involved in leucine biosynthesis and
include some archaea.
Length = 156
Score = 38.2 bits (89), Expect = 0.008
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMG 816
++ AG +G GSSR+ A + G+ VIA+SF RI N I +G
Sbjct: 50 IIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIG 95
>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
Provisional.
Length = 200
Score = 38.2 bits (90), Expect = 0.011
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 31/87 (35%)
Query: 754 LFIYDAAMRYKVDQVP----------------LVVFAGVEYGNGSSRD---WAAKGTRLL 794
LF RY D P L+ AG +G GSSR+ WA L
Sbjct: 42 LF---DDWRYLDDGQPNPDFVLNQPRYQGASILL--AGDNFGCGSSREHAPWA-----LA 91
Query: 795 --GVRSVIAESFERIHRSNLIGMGVIP 819
G R+VIA SF I +N G++P
Sbjct: 92 DYGFRAVIAPSFADIFYNNCFKNGLLP 118
>gnl|CDD|177714 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 37.2 bits (86), Expect = 0.018
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264
PDT VGT DSHT +GI G+ A A G P+ M PE V TG++Q G
Sbjct: 552 PDT-VGTGGDSHTRF--PIGISFPAGSGLVAFGAATGVIPLDM--PESVLVRFTGTMQPG 606
Query: 265 VTATDLVLTITQMLRKEGVVS 285
+T DLV I ++G+++
Sbjct: 607 ITLRDLVHAIPYTAIQDGLLT 627
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 36.4 bits (84), Expect = 0.033
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 755 FIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIG 814
F+ M+ K ++ G +G GSSR+ A G ++V+AES+ RI N +
Sbjct: 120 FVEPGEMKTKYS----IIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVA 175
Query: 815 MGVI 818
G +
Sbjct: 176 TGEV 179
>gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The candidate archaeal leuD
proteins are not included in the seed alignment for this
model and score below the trusted cutoff.
Length = 188
Score = 30.9 bits (70), Expect = 1.3
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGV 817
D + Q ++ A +G GSSR+ A G + +IA SF I +N G+
Sbjct: 59 DFVLNQPQYQGASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGL 118
Query: 818 IP 819
+P
Sbjct: 119 LP 120
>gnl|CDD|114880 pfam06187, DUF993, Protein of unknown function (DUF993). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 382
Score = 30.0 bits (68), Expect = 2.9
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEK 705
G R+ C G TDH++P+ + L A+Y Q E
Sbjct: 107 GGRVACGAG----TDHLAPSPAATLDDVIAAYEEQIEAVEA 143
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 29.5 bits (67), Expect = 4.2
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 645 RNPPYFETISKHIPEIVDICG---ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG 701
PP +T+++ P++ CG +L + I ISP + L + A G
Sbjct: 39 EQPPGLDTLAREFPDVELRCGGFDCELLVQASEII----ISPG--LALDTPALRAAAAMG 92
Query: 702 VK 703
++
Sbjct: 93 IE 94
>gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 29.2 bits (66), Expect = 5.1
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 490 EYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPD 546
E+ LG V F T+ +S + ++V V S R++PD
Sbjct: 759 EFCRELG---VNFTFTSA-SSSPRQDQPPQPGPLFNTIVFTASAPVPSSTP----RLTPD 810
Query: 547 VEA--NYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDI 590
++ + L+ + Y LAG+V + + G SP YL+++
Sbjct: 811 LKKPGSALVHLSISPEYTLAGSVFEQIFGLKSGTLPDISPSYLKNL 856
>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional.
Length = 445
Score = 29.0 bits (65), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 60 VTKEQIHAF-VKWLDNKGTVESEVSYR 85
V ++I F V W+D+KG V+ + YR
Sbjct: 51 VEPDRIFTFRVPWVDDKGEVQVNLGYR 77
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 29.0 bits (65), Expect = 6.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 405 YYKKSHTLDEKYPVKGCDFHLKHGD 429
YYK++HT+D+++ +K C +H D
Sbjct: 689 YYKEAHTIDQQWSIKACGVRQRHID 713
>gnl|CDD|130202 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Length = 543
Score = 28.7 bits (64), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 96 GVPAVVDLAAMRDAIVVLGGDP 117
G+ +VD+AA++ A + LG DP
Sbjct: 213 GLADIVDMAAIQKAGLRLGVDP 234
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 14,907,107
Number of extensions: 1004707
Number of successful extensions: 1893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 52
Length of query: 896
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 794
Effective length of database: 3,790,457
Effective search space: 3009622858
Effective search space used: 3009622858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)