HHsearch alignment for GI: 254780452 and conserved domain: pfam06539
>pfam06539 consensus.
Probab=98.87 E-value=3.5e-06 Score=58.12 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999998545566655667876445799999999832843267777889999987765401454
Q gi|254780452|r 29 MIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSA 108 (259)
Q Consensus 29 i~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s~ 108 (259)
T Consensus 10 v~KT~ill~l-~~~~a~~~w~~~~~~~~~~~~~~~-------------------~~~i~g~i~g~vlalv~~Fk--~~~s 67 (228)
T pfam06539 10 VTKTGITLAI-LVVTAVLAWILSLGVDDVNVGAAM-------------------GVTIGGAIGGLILALVTSFK--KKPS 67 (228)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHH-------------------HHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 9999999999-999999999853453333334789-------------------99999999999999999938--8751
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHH
Q ss_conf 20123899999998776789999742-----17889999999999999999998655--555542035789999999999
Q gi|254780452|r 109 YAAKMMFLLYSALIGLSLSSFFLVYT-----SKSIVQTFFITAASFGSLSLYGYTTK--RDLGPIGSFMIMGAFGLFLLS 181 (259)
Q Consensus 109 ~~~~~l~~~f~~~~G~tls~i~~~y~-----~~~I~~A~~~Ta~if~~ls~~~~~tk--~D~s~~g~~L~~~l~~lii~~ 181 (259)
T Consensus 68 p---~l~~~YA~~EGl~lG~iS~~fe~~~~ypGIv~qAv~~T~~vf~~mL~-lYk~giIrvT~kf~~~v~~a~~gi~~~y 143 (228)
T pfam06539 68 P---ATALSYAAFEGVFLGSISAVFENFLGAGGIVFQAVLGTMGVFFGMLL-AYRTGLIRVTPRFYRGVMAAIIGILLLY 143 (228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6---99999999987999999999987413897999999999999999999-9992880638779999999999999999
Q ss_pred HHHH---HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9974---136-------607999999999999999999999999997215676543504799999999999999999999
Q gi|254780452|r 182 LVNL---FMR-------SSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLL 251 (259)
Q Consensus 182 i~~~---F~~-------s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL 251 (259)
T Consensus 144 lv~~vl~~fg~~~~~~~~g~lgI~~sl~~v~iAal~LilDFd~Ie~gv~~ga----Pk~~eW~~AfgLlvTLVWLYlEiL 219 (228)
T pfam06539 144 LGNLVLSFFGIGDPIRDSGILGIVFSLFVIVIAAFSLLLDFDFIEKGVRYGA----PKYMEWYGAFGLMVTLVWLYIEIL 219 (228)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999975787653586299999999999999999962999999998299----836299999999999999999999
Q ss_pred HHHCC
Q ss_conf 99377
Q gi|254780452|r 252 RFLGS 256 (259)
Q Consensus 252 ~ilG~ 256 (259)
T Consensus 220 RLL~~ 224 (228)
T pfam06539 220 RLLSK 224 (228)
T ss_pred HHHHH
T ss_conf 99999