RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780452|ref|YP_003064865.1| hypothetical protein
CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
(259 letters)
>gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein;
Provisional.
Length = 219
Score = 35.6 bits (82), Expect = 0.015
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 145 TAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIF 204
TA F S Y TT++D+ +G ++ G + + + N+F++ A+ L +SA+ ++I
Sbjct: 113 TALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILIS 172
Query: 205 SALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSRR 258
S ++T I + E + + LY+ IFV LL LG
Sbjct: 173 SGAILFETSNI---------IHGGETNYIRATVSLYVSLYNIFVSLLSILGFAS 217
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 34.1 bits (79), Expect = 0.039
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 42 VTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALM 79
V+ I+ + +L T P+ A+ I++RG++LTG GAL+
Sbjct: 250 VSAIVEAVKEVLEKT-PPELAADIVDRGIVLTGGGALL 286
>gnl|CDD|184404 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 32.4 bits (75), Expect = 0.13
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 59 PDAASIIINRGVMLTGFGALM 79
P+ A+ II+RG++LTG GAL+
Sbjct: 273 PELAADIIDRGIVLTGGGALL 293
>gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 32.2 bits (74), Expect = 0.16
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 59 PDAASIIINRGVMLTGFGALMY 80
P+ ++ II+RG+++TG GAL++
Sbjct: 268 PELSADIIDRGIIMTGGGALLH 289
>gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 30.8 bits (71), Expect = 0.37
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 59 PDAASIIINRGVMLTGFGAL 78
P+ A+ I++RG++LTG GAL
Sbjct: 269 PELAADIVDRGIVLTGGGAL 288
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
A close homolog is found in the Archaeon
Methanobacterium thermoautotrophicum, and a more distant
homolog in Archaeoglobus fulgidus. The family is related
to cell division protein FtsA and heat shock protein
DnaK.
Length = 333
Score = 30.5 bits (69), Expect = 0.47
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 42 VTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALM 79
V I+ + L T P+ A+ I+ RG++LTG GAL+
Sbjct: 256 VNQIVEAVKRTLEKT-PPELAADIVERGIVLTGGGALL 292
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 29.9 bits (67), Expect = 0.75
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 45 IMSFLVNILATTVD--PDAASIIINRGVMLTGFGALM 79
++ L I AT D P+ + I++RGV+LTG GAL+
Sbjct: 255 LLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALL 291
>gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950). This is
a bacterial family of uncharacterized proteins.
Length = 266
Score = 28.0 bits (63), Expect = 2.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 41 GVTGIMSFLVN 51
G TG+M+F+VN
Sbjct: 223 GDTGVMTFIVN 233
>gnl|CDD|150933 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 448
Score = 28.1 bits (63), Expect = 2.6
Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 22/141 (15%)
Query: 27 AYMIRVYNLMALGLGVTGIM-SFLVNILATTV------DPDAASIIINRGVMLTG----- 74
M ++A L + G+ ++ ++A + + +I G T
Sbjct: 58 PGMPIAKFVLAALLLLLGVCIAWAWGVIAMKIANRARGQSITQADLIQAGACTTSVSLAA 117
Query: 75 ------FGALMYTSPLRWIFIFAPLGVFIFL--NVRLHSLSAYAAKMMFLLYSALIGLSL 126
F + + ++ L VFI+ +R + +A +F + +A + L+
Sbjct: 118 CAQQQVFDGRYLDARVSAVYAVW-LFVFIYFVGWLRAKN-PKFAFGYIFGIIAANVFLTY 175
Query: 127 SSFFLVYTSKSIVQTFFITAA 147
+ ++ T
Sbjct: 176 GPLLPTFAPGTLGLTLLKPMG 196
>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit;
Provisional.
Length = 244
Score = 27.0 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 210 YDTQKIKEAYSDRYDVAYAERQSVIGAL 237
Y+ + E +S Y+V Y E S++ AL
Sbjct: 14 YNPEVDTEPHSQTYEVPYDETTSLLDAL 41
>gnl|CDD|149229 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain.
Length = 148
Score = 26.5 bits (59), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 35 LMALGLGVTGIMSFLVNILATTVDPDAASI 64
L+A G G+T +S L +++ + SI
Sbjct: 6 LVAGGSGITPFISILRDLINKSKKNTLKSI 35
>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional.
Length = 257
Score = 26.5 bits (59), Expect = 6.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 66 INRGVMLTGFGALMYTSPLRW 86
+N G LTGF M +P RW
Sbjct: 173 VNPGPYLTGFNDTMAETPKRW 193
>gnl|CDD|180807 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 26.1 bits (58), Expect = 8.4
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 58 DPDAASII----INRGVMLTGFGALMYTSP 83
DP+ + + +NRGV++T F +M P
Sbjct: 401 DPELEAALHLYLLNRGVLITPFHNMMLVCP 430
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.142 0.405
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,191,692
Number of extensions: 274152
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 115
Length of query: 259
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 168
Effective length of database: 4,028,145
Effective search space: 676728360
Effective search space used: 676728360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)