HHsearch alignment for GI: 254780453 and conserved domain: CHL00200
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional.
Probab=97.61 E-value=0.0045 Score=40.30 Aligned_cols=199 Identities=16% Similarity=0.218 Sum_probs=104.9
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHC--H-HHHHHHH----HCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---515--4-6678776----40424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDG--K-SVFLDMK----LFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~--~-~If~D~K----~~DIp------- 76 (238)
T Consensus 21 ~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~PivlMtY~ 100 (263)
T CHL00200 21 ITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYY 100 (263)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf 70738987899999999997699999978988886665899999999999779877789999999860679988998620
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
T Consensus 101 N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~~~------a~GFiY~ 173 (263)
T CHL00200 101 NPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARA------APGCIYL 173 (263)
T ss_pred HHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHH------CCCCEEE
T ss_conf 6888738899999999849986874799978889999999855862166647899-69999999972------8980898
Q ss_pred HHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEECCHHCC---
Q ss_conf 110244311134-----10344554420244035510113578657984003698999---9659989999853308---
Q gi|254780453|r 151 ARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGASHIVVSRPIVR--- 219 (238)
Q Consensus 151 a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVVGR~I~~--- 219 (238)
T Consensus 174 vs~~GvTG~~~~~~~~l~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~~aDGvIVGSaiV~~i~ 239 (263)
T CHL00200 174 VSTTGVTGLKTELDKKLKKLIETIKKMT-NKPI--ILGFGIS-----------TSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEECCCC-----------CHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 5336556875445187999999999736-9984--8735879-----------999999997459999998789999998
Q ss_pred CCCHHH---HHHHHHHHHHH
Q ss_conf 888899---99999998665
Q gi|254780453|r 220 AADPVS---AAQEFQRAISL 236 (238)
Q Consensus 220 a~dP~~---aa~~i~~~i~~ 236 (238)
T Consensus 240 ~~~~~~~~~~i~~f~~~lk~ 259 (263)
T CHL00200 240 GSSPEKGLDQLSEFCKVAKK 259 (263)
T ss_pred HCCHHHHHHHHHHHHHHHHH
T ss_conf 55907689999999999999