HHsearch alignment for GI: 254780453 and conserved domain: PRK05437
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional.
Probab=92.06 E-value=0.32 Score=28.30 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC------CHHHHHHHHHHHHH
Q ss_conf 554420244035510113578657984003698999965998999985330888------88999999999866
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA------DPVSAAQEFQRAIS 235 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~------dP~~aa~~i~~~i~ 235 (238)
T Consensus 254 e~~~~~~~~~iiasGGIR~gl-D---------i~KaLaLGA~~vgia~p~L~~l~~~g~e~~~~~l~~~~~elk 317 (351)
T PRK05437 254 EARSALPDLPIIASGGIRTGL-D---------IAKALALGADAVGLAGPFLKAALEGGVEAVIEEIEGWIEELK 317 (351)
T ss_pred HHHHHCCCCEEEEECCCCCHH-H---------HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999747998299627878789-9---------999999551077758999999985699999999999999999