HHsearch alignment for GI: 254780453 and conserved domain: PRK13125
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=98.04 E-value=0.00013 Score=50.20 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=110.4
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHC--CCHHHHHHHH----HHCH---HHHHH-HHHCCHH-
Q ss_conf 5789889--9960799899999999738852289986899842--5589999998----5154---66787-7640424-
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFS--GGLELARDLI----SDGK---SVFLD-MKLFDIG- 76 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~--~G~~~i~~l~----k~~~---~If~D-~K~~DIp- 76 (238)
T Consensus 2 ~~r~ali~yitaG~P~~e~s~~~l~~l~~~aDiiElGiPfSDPvADGpvI-q~A~~~Al~~g~~~~~i~~~~r~~~~~pi 80 (247)
T PRK13125 2 ISRPGLGVYLTAGWPNAETFLEAIDGLVGLVDFLELGIPPKNPKYDGPVI-RKAHREVSYWGLDYWSLLEEVRKKVGVPT 80 (247)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHH-HHHHHHHHHCCCCHHHHHHHHCCCCCCCE
T ss_conf 98865888871837998999999999864799999799889876660999-99999998769989999998505689988
Q ss_pred ------HHH----HHHHHHHCCCCCEEEEEECCC----HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC--CCH
Q ss_conf ------678----987765215675089972460----4677776530235531046664147776887652012--104
Q gi|254780453|r 77 ------SSV----TAAIEHIANMGVAMLTVHAYP----QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE--KDI 140 (238)
Q Consensus 77 ------nTv----~~~v~~~~~~g~d~iTvH~~~----~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~--~~~ 140 (238)
T Consensus 81 vlM~Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt-~~~ri~~i~~~s~gFv 159 (247)
T PRK13125 81 YIMTYLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKF-PDRLIRRLSKLSPLFI 159 (247)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHCCCEE
T ss_conf 972988999976999999999859975883388875467899999999976984699957998-1999999998689779
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--C-CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH---HHHCCCCEEEEC
Q ss_conf 887654454211024431113--4-1034455442024403551011357865798400369899---996599899998
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVC--S-PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET---ALKYGASHIVVS 214 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~--s-~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~---Ai~~GaD~iVVG 214 (238)
T Consensus 160 Y--~-------~~~gvTG~~~~~~~~~~i~~ik~~~~~~Pv~--vGFGI~-----------t~e~v~~~~~~~aDGvIVG 217 (247)
T PRK13125 160 Y--L-------GLYPATGVELPVYVERNIKRVRELVGDVYLV--AGFAID-----------SPEDAAKALSAGADGVVVG 217 (247)
T ss_pred E--E-------EEECCCCCCCCCCHHHHHHHHHHHCCCCCEE--EECCCC-----------CHHHHHHHHHCCCCEEEEC
T ss_conf 9--9-------9443678877325999999999856999858--832879-----------9999999985589999987
Q ss_pred CHHCC--CCCHHHHHHHHHHHHH
Q ss_conf 53308--8888999999999866
Q gi|254780453|r 215 RPIVR--AADPVSAAQEFQRAIS 235 (238)
Q Consensus 215 R~I~~--a~dP~~aa~~i~~~i~ 235 (238)
T Consensus 218 SaiVk~i~~~~~~~~~~~v~~l~ 240 (247)
T PRK13125 218 TAFIRRLERNGVEEALSLLKEIR 240 (247)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 89999999769899999999999