HHsearch alignment for GI: 254780453 and conserved domain: TIGR01949
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=96.61 E-value=0.011 Score=37.72 Aligned_cols=211 Identities=17% Similarity=0.227 Sum_probs=123.8
Q ss_pred CCCCCCCCCCC---CCEEEEEEC--C-----CHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHH-HCHH----
Q ss_conf 74112311578---988999607--9-----98999999997388-5228998689984255899999985-1546----
Q gi|254780453|r 2 DAGLIIDVDEK---KRLVVGLDL--P-----TVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLIS-DGKS---- 65 (238)
Q Consensus 2 ~~~~~~~~~kk---~~livALD~--~-----~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k-~~~~---- 65 (238)
T Consensus 3 K~~Rl~Ri~~R~~~r~vivPmDHGit~Gpi~GLvdi~~tv~~V~~gGadAVL~hk--------Gi~~~~h~~~g~D~GlI 74 (259)
T TIGR01949 3 KKVRLERIFNREDGRTVIVPMDHGITLGPIDGLVDIRKTVNEVAEGGADAVLLHK--------GIARRGHREKGKDAGLI 74 (259)
T ss_pred CHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC--------CCCCCCCCCCCCCEEEE
T ss_conf 4112223100148877998667884567211111487899997607766785278--------71004565668316999
Q ss_pred HHHHHHHCCHHHH----HHHHHHHHCCCCCEEEEEECC-C-----HHHHHHHH---HHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 6787764042467----898776521567508997246-0-----46777765---302355310466641477768876
Q gi|254780453|r 66 VFLDMKLFDIGSS----VTAAIEHIANMGVAMLTVHAY-P-----QTMRSAVS---VVRDTGICLLAVTVLTSMDDFDLR 132 (238)
Q Consensus 66 If~D~K~~DIpnT----v~~~v~~~~~~g~d~iTvH~~-~-----~~l~~~~~---~~~~~~~~il~Vt~LTS~~~~~l~ 132 (238)
T Consensus 75 vHLsAST~L~P~p~~K~~~~tVE~Ai~~GADAVS~HvNvGs~~e~d~~~~lg~vA~~ad~~GvPlLA-----MmYaRG-- 147 (259)
T TIGR01949 75 VHLSASTSLSPDPNDKRIVTTVEDAIRLGADAVSIHVNVGSDTEADQIEDLGDVAEIADDWGVPLLA-----MMYARG-- 147 (259)
T ss_pred EECCCCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHE-----CCCCCC--
T ss_conf 8604543258888787578514899732898679988648987389999998999988654884201-----127886--
Q ss_pred HHHCC-CCHHHHHHHHHHHHHHCCCCCCC-CCCH-HHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC
Q ss_conf 52012-10488765445421102443111-3410-344554420--2440355101135786579840036989999659
Q gi|254780453|r 133 ESGYE-KDISDMVRMRAVQARDIGMGGIV-CSPQ-EVRMVREIV--GHNMVIVTPGIRMLGSATDGQKRFATPETALKYG 207 (238)
Q Consensus 133 ~~g~~-~~~~~~v~~~a~~a~~~g~~GvV-~s~~-ei~~ir~~~--~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G 207 (238)
T Consensus 148 -~~i~~e~d~~~v~HAaRlg~ElGAD-vvK~~Y~Gd~~SF~~VV~~c~~PVvvAGG~k~~s~~efLq~----v~DA~~aG 221 (259)
T TIGR01949 148 -PRIDDEVDPEVVAHAARLGEELGAD-VVKVPYTGDIDSFEEVVKACAVPVVVAGGPKLASDREFLQM----VKDAMEAG 221 (259)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH----HHHHHHHC
T ss_conf -8876644767888887653534577-66514317746799996217877787377798874677788----99999818
Q ss_pred CCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 98999985330888889999999998
Q gi|254780453|r 208 ASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 208 aD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
T Consensus 222 AAGvs~GRnvFqh~~p~~~~~Av~~i 247 (259)
T TIGR01949 222 AAGVSVGRNVFQHDTPVAITKAVSAI 247 (259)
T ss_pred CCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 78231056301468878999999873