HHsearch alignment for GI: 254780453 and conserved domain: cd02809

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.50  E-value=0.36  Score=27.99  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             HHHHCCCCCCEEEEEEECCCCHHHHHHHH-----CC---CCHHHHHHHHHHHHHHCCCCCCCC-----------CCHHHH
Q ss_conf             65302355310466641477768876520-----12---104887654454211024431113-----------410344
Q gi|254780453|r  107 VSVVRDTGICLLAVTVLTSMDDFDLRESG-----YE---KDISDMVRMRAVQARDIGMGGIVC-----------SPQEVR  167 (238)
Q Consensus       107 ~~~~~~~~~~il~Vt~LTS~~~~~l~~~g-----~~---~~~~~~v~~~a~~a~~~g~~GvV~-----------s~~ei~  167 (238)
T Consensus        87 AraA~~~gi-~~~lSt~ss~slEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~  165 (299)
T cd02809          87 ARAAAAAGI-PFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLA  165 (299)
T ss_pred             HHHHHHHCC-CEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             999997056-4311376656689999744898467764369999999999999985999899970589878879999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEE----CCHHCCCCCHHHHHHHHHHHHH
Q ss_conf             5544202440355101135786579840036989---999659989999----8533088888999999999866
Q gi|254780453|r  168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPE---TALKYGASHIVV----SRPIVRAADPVSAAQEFQRAIS  235 (238)
Q Consensus       168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVV----GR~I~~a~dP~~aa~~i~~~i~  235 (238)
T Consensus       166 ~l~~~~~~p--~i~KGi-------------~~~~DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~  225 (299)
T cd02809         166 WLRSQWKGP--LILKGI-------------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG  225 (299)
T ss_pred             HHHHHCCCC--EEEECC-------------CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             999866998--799727-------------889999999985998899728873336888778999999999854