HHsearch alignment for GI: 254780453 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.50 E-value=0.36 Score=27.99 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=71.2
Q ss_pred HHHHCCCCCCEEEEEEECCCCHHHHHHHH-----CC---CCHHHHHHHHHHHHHHCCCCCCCC-----------CCHHHH
Q ss_conf 65302355310466641477768876520-----12---104887654454211024431113-----------410344
Q gi|254780453|r 107 VSVVRDTGICLLAVTVLTSMDDFDLRESG-----YE---KDISDMVRMRAVQARDIGMGGIVC-----------SPQEVR 167 (238)
Q Consensus 107 ~~~~~~~~~~il~Vt~LTS~~~~~l~~~g-----~~---~~~~~~v~~~a~~a~~~g~~GvV~-----------s~~ei~ 167 (238)
T Consensus 87 AraA~~~gi-~~~lSt~ss~slEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~ 165 (299)
T cd02809 87 ARAAAAAGI-PFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLA 165 (299)
T ss_pred HHHHHHHCC-CEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 999997056-4311376656689999744898467764369999999999999985999899970589878879999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEE----CCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5544202440355101135786579840036989---999659989999----8533088888999999999866
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPE---TALKYGASHIVV----SRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVV----GR~I~~a~dP~~aa~~i~~~i~ 235 (238)
T Consensus 166 ~l~~~~~~p--~i~KGi-------------~~~~DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~ 225 (299)
T cd02809 166 WLRSQWKGP--LILKGI-------------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG 225 (299)
T ss_pred HHHHHCCCC--EEEECC-------------CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999866998--799727-------------889999999985998899728873336888778999999999854