HHsearch alignment for GI: 254780453 and conserved domain: cd04727
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.91 E-value=0.016 Score=36.78 Aligned_cols=181 Identities=22% Similarity=0.337 Sum_probs=93.6
Q ss_pred EEEECCCHHHHHHHHHHHCCCC-CEE-EECHHHHHCCC------HHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9960799899999999738852-289-98689984255------8999999851-5466787764042467898776521
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTV-SFY-KIGYHLSFSGG------LELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i-~~i-Kig~~l~~~~G------~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
T Consensus 11 VIMDV~n~eQA-~IAE~AGAvaVMaLervPadiR~~GGVaRMsdp~~I~eI~~aVsIPVMAK---~RIGHfvEAqiL--e 84 (283)
T cd04727 11 VIMDVTNAEQA-RIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAK---VRIGHFVEAQIL--E 84 (283)
T ss_pred EEEEECCHHHH-HHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEE---ECCCHHHHHHHH--H
T ss_conf 78883789999-99987175378642348787874479001589899999998522200234---202217999999--9
Q ss_pred CCCCEEEE-----------------------EEC---CCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHH
Q ss_conf 56750899-----------------------724---6046777765302355310466641477768876520121048
Q gi|254780453|r 88 NMGVAMLT-----------------------VHA---YPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDIS 141 (238)
Q Consensus 88 ~~g~d~iT-----------------------vH~---~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~ 141 (238)
T Consensus 85 algVD~IDESEVLTpAD~~~HI~K~~F~vPFVCGarnLgEAlRRI~EGAaMIRTKG---------------Ea-GTGnVv 148 (283)
T cd04727 85 ALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKG---------------EA-GTGNVV 148 (283)
T ss_pred HHCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCCCCHHHHHHHHCCHHCCCCCC---------------CC-CCCCHH
T ss_conf 95888235223577775320443103777744068981899988862120167779---------------68-856699
Q ss_pred HHHHH------------------HHHHHHHCCCCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH
Q ss_conf 87654------------------4542110244311134103-4455442024403551011357865798400369899
Q gi|254780453|r 142 DMVRM------------------RAVQARDIGMGGIVCSPQE-VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET 202 (238)
Q Consensus 142 ~~v~~------------------~a~~a~~~g~~GvV~s~~e-i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~ 202 (238)
T Consensus 149 eAVrH~R~i~~eI~~l~~~~~~el~~~Ak~~~a------p~elv~~v~~~-gr--L---PVvnFaAGG------iATPAD 210 (283)
T cd04727 149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQA------PYELVKETAKL-GR--L---PVVNFAAGG------VATPAD 210 (283)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC------CHHHHHHHHHH-CC--C---CEEEECCCC------CCCHHH
T ss_conf 999999999999999977999999999998677------58999999997-89--7---636642678------588377
Q ss_pred H---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9---9659989999853308888899999999986651
Q gi|254780453|r 203 A---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 203 A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
T Consensus 211 AALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy 248 (283)
T cd04727 211 AALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999728987887765457899999999999998465