HHsearch alignment for GI: 254780453 and conserved domain: cd04728
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.67 E-value=0.064 Score=32.85 Aligned_cols=194 Identities=21% Similarity=0.354 Sum_probs=114.0
Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHH-HCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHH
Q ss_conf 57898899960-7998999999997388522899868998-4255899999985154667877640424678-----987
Q gi|254780453|r 10 DEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLS-FSGGLELARDLISDGKSVFLDMKLFDIGSSV-----TAA 82 (238)
Q Consensus 10 ~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~-~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~ 82 (238)
T Consensus 7 ~f~SRLilGTgky~s~~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~~~~~--------LPNTAGc~ta~EA 78 (248)
T cd04728 7 TFSSRLLLGTGKYPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTL--------LPNTAGCRTAEEA 78 (248)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCEE--------CCCCCCCCCHHHH
T ss_conf 87743378648999999999999996897699998630578888526898752338668--------7654011679999
Q ss_pred HHH---HCC-CCCEEEEE--EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHH
Q ss_conf 765---215-67508997--24-----60---4677776530235531046664147776---88765201210488765
Q gi|254780453|r 83 IEH---IAN-MGVAMLTV--HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVR 145 (238)
Q Consensus 83 v~~---~~~-~g~d~iTv--H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~ 145 (238)
T Consensus 79 vr~A~laRE~~~t~~IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~-GF~Vl---pY~~~D~v~akrLe~~Gc~avMP---- 150 (248)
T cd04728 79 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFTVL---PYCTDDPVLAKRLEDAGCAAVMP---- 150 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EECCCCHHHHHHHHHCCCEEEEE----
T ss_conf 99999999984898699998179767798868999999999988-99897---86788999999999749534520----
Q ss_pred HHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHH
Q ss_conf 4454211024-431113410344554420244035510113578657984003698999965998999985330888889
Q gi|254780453|r 146 MRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPV 224 (238)
Q Consensus 146 ~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~ 224 (238)
T Consensus 151 ----lgsPIGSg~Gl~-n~~~l~~i~e~~-~vPvIVDAGiG~pS~----------Aa~aMElG~daVL~NTAIA~A~dPv 214 (248)
T cd04728 151 ----LGSPIGSGQGLL-NPYNLRIIIERA-DVPVIVDAGIGTPSD----------AAQAMELGADAVLLNTAIAKAKDPV 214 (248)
T ss_pred ----CCCCCCCCCCCC-CHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf ----456434798879-999999999847-998898479997567----------8999872655334546877169989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999866
Q gi|254780453|r 225 SAAQEFQRAIS 235 (238)
Q Consensus 225 ~aa~~i~~~i~ 235 (238)
T Consensus 215 ~MA~A~~~AV~ 225 (248)
T cd04728 215 AMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999