HHsearch alignment for GI: 254780453 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.53 E-value=0.33 Score=28.24 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=65.2
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98776521567508997246046777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
T Consensus 70 ~~~~~~~~~~~v~~v~~~~g~p--~~~v~~l~~~g~~v~~~--v~s~-------------------~~A~~a~~~GaD~i 126 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFGPP--AEVVERLKAAGIKVIPT--VTSV-------------------EEARKAEAAGADAL 126 (236)
T ss_pred HHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHCCCEEEEE--CCCH-------------------HHHHHHHHCCCCEE
T ss_conf 9999999976999999879897--89999999829989995--8989-------------------99999998189989
Q ss_pred CCCCH---------------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 13410---------------34455442024403551011357865798400369899996599899998533088
Q gi|254780453|r 160 VCSPQ---------------EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 160 V~s~~---------------ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
T Consensus 127 v~qG~eAGGH~g~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~----------~i~aal~lGA~gV~~GTrfl~t 191 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGR----------GIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEECCCCCHH----------HHHHHHHHCCCEEEECCHHHHC
T ss_conf 99777777788987555677999999982-98689654627789----------9999998089799955385708