HHsearch alignment for GI: 254780453 and conserved domain: cd04731

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.37  E-value=0.46  Score=27.29  Aligned_cols=143  Identities=13%  Similarity=0.190  Sum_probs=74.2

Q ss_pred             HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             98776521567508997246----0467777653023553104666414777-688765201210488765445421102
Q gi|254780453|r   80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMD-DFDLRESGYEKDISDMVRMRAVQARDI  154 (238)
Q Consensus        80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~-~~~l~~~g~~~~~~~~v~~~a~~a~~~  154 (238)
T Consensus        83 ~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~~~~Gsq-~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~  161 (243)
T cd04731          83 LEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQ-CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL  161 (243)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCC-CEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             79999999779978998984423771435788756993-09999997653789628984698441267899999999846


Q ss_pred             CCCCCCC---------CCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEECCHHHHHH-CCCCEEEECCHHCCCCC
Q ss_conf             4431113---------4103445544202--4403551011357865798400369899996-59989999853308888
Q gi|254780453|r  155 GMGGIVC---------SPQEVRMVREIVG--HNMVIVTPGIRMLGSATDGQKRFATPETALK-YGASHIVVSRPIVRAAD  222 (238)
Q Consensus       155 g~~GvV~---------s~~ei~~ir~~~~--~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~-~GaD~iVVGR~I~~a~d  222 (238)
T Consensus       162 G~geil~tdI~~DGt~~G~d~~l~~~i~~~~~~piI~sGGi~~~~----------di~~~l~~~~~~gv~~g~~~~~~~~  231 (243)
T cd04731         162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPE----------HFVEAFEEGGADAALAASIFHFGEY  231 (243)
T ss_pred             CCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHH----------HHHHHHHHCCCEEEEEHHHHHCCCC
T ss_conf             987899987257685665799999999986899999988999999----------9999998789829988227676998


Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999999998
Q gi|254780453|r  223 PVSAAQEFQRA  233 (238)
Q Consensus       223 P~~aa~~i~~~  233 (238)
T Consensus       232 ~l~~~k~~L~~  242 (243)
T cd04731         232 TIAELKEYLAE  242 (243)
T ss_pred             CHHHHHHHHHH
T ss_conf             99999999861