HHsearch alignment for GI: 254780453 and conserved domain: cd04732
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=90.57 E-value=1.5 Score=23.96 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHH-CCCCCEEEECHHHH-HCCCHHHHHHHHHHC-HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9989999999973-88522899868998-425589999998515-46678776404246789877652156750899724
Q gi|254780453|r 22 PTVKEAERIVSIL-SDTVSFYKIGYHLS-FSGGLELARDLISDG-KSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 22 ~~~~e~l~l~~~l-~~~i~~iKig~~l~-~~~G~~~i~~l~k~~-~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
T Consensus 29 gdP~~~a~~~~~~g~d~l~i~DLdaa~~~~~~n~~~I~~I~~~~~~pi~vGGGIrs-----~~~~~~l~~~Ga~kvvi~s 103 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS-----LEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCEEECCCCCC-----HHHHHHHHHCCCCEEEECC
T ss_conf 99999999999869998999967530308911599999999767956897377175-----9999999864887189714
Q ss_pred C----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCHH
Q ss_conf 6----04677776530235531046664147776887652012104887654454211024431113---------4103
Q gi|254780453|r 99 Y----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC---------SPQE 165 (238)
Q Consensus 99 ~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~---------s~~e 165 (238)
T Consensus 104 ~~~~~~~~~~~~~~~~G~q-~iv~slD~---k~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d 178 (234)
T cd04732 104 AAVKNPELVKELLKEYGGE-RIVVGLDA---KDGKVATK-GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN 178 (234)
T ss_pred CHHHCHHHHHHHHHHCCCC-CEEEEEEE---ECCCHHCC-CCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 0110827899999982976-46999997---51200016-8640013516999999974586469987642566535689
Q ss_pred HHH---HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC-CHHHH
Q ss_conf 445---54420244035510113578657984003698999965998999985330888-88999
Q gi|254780453|r 166 VRM---VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA-DPVSA 226 (238)
Q Consensus 166 i~~---ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~-dP~~a 226 (238)
T Consensus 179 ~~ll~~i~~~~-~~p~i~~GGv~s~~----d------i~~l~~~g~~gvivgsAlh~g~i~~~e~ 232 (234)
T cd04732 179 FELYKELAAAT-GIPVIASGGVSSLD----D------IKALKELGVAGVIVGKALYEGKITLEEA 232 (234)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCCHH----H------HHHHHHCCCCEEEEEHHHHCCCCCHHHH
T ss_conf 99999998657-99899981899999----9------9999977998999988987799898997