Query gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 238
No_of_seqs 109 out of 1969
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 18:36:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780453.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00230 orotidine 5'-phosphat 100.0 0 0 484.3 20.6 225 12-236 2-230 (231)
2 TIGR01740 pyrF orotidine 5'-ph 100.0 0 0 400.8 16.3 216 15-231 1-233 (233)
3 COG0284 PyrF Orotidine-5'-phos 100.0 0 0 395.3 19.5 226 10-236 9-236 (240)
4 cd04725 OMP_decarboxylase_like 100.0 0 0 394.2 19.2 214 15-230 1-216 (216)
5 pfam00215 OMPdecase Orotidine 100.0 0 0 387.4 19.1 215 13-230 1-218 (218)
6 PRK13813 orotidine 5'-phosphat 100.0 0 0 372.5 19.2 208 10-235 1-213 (215)
7 cd04726 KGPDC_HPS 3-Keto-L-gul 100.0 2.4E-44 0 307.4 15.6 198 13-230 1-202 (202)
8 TIGR03128 RuMP_HxlA 3-hexulose 100.0 2.4E-42 0 294.5 13.1 201 14-234 1-206 (206)
9 PRK13306 ulaD 3-keto-L-gulonat 100.0 1.5E-38 3.9E-43 269.9 13.7 206 10-237 1-214 (216)
10 PRK13305 sgbH 3-keto-L-gulonat 100.0 1.2E-27 3E-32 199.4 13.9 206 10-237 1-214 (220)
11 PRK07028 bifunctional hexulose 100.0 4.7E-27 1.2E-31 195.5 14.3 193 11-236 2-212 (429)
12 COG0269 SgbH 3-hexulose-6-phos 99.9 2.5E-25 6.4E-30 184.3 13.3 206 11-236 2-214 (217)
13 PRK13307 bifunctional formalde 99.9 1.8E-24 4.5E-29 178.8 13.4 203 10-235 170-379 (392)
14 PRK05500 bifunctional orotidin 99.9 5.1E-24 1.3E-28 175.8 15.6 215 10-237 13-261 (478)
15 PRK00125 pyrF orotidine 5'-pho 99.9 1.2E-21 3.1E-26 160.5 14.3 222 5-237 6-274 (277)
16 KOG1377 consensus 99.9 3.5E-23 8.9E-28 170.4 1.7 215 7-233 24-250 (261)
17 TIGR02127 pyrF_sub2 orotidine 99.8 7.4E-19 1.9E-23 142.4 12.1 213 10-229 11-304 (306)
18 PTZ00170 D-ribulose-5-phosphat 99.1 2.6E-10 6.7E-15 87.1 8.8 203 16-236 8-220 (224)
19 PRK08745 ribulose-phosphate 3- 99.0 1.2E-09 3E-14 82.9 7.6 202 14-237 8-222 (223)
20 PRK08883 ribulose-phosphate 3- 99.0 1.4E-09 3.5E-14 82.5 7.8 200 16-237 6-218 (220)
21 PRK08091 ribulose-phosphate 3- 98.9 4.4E-09 1.1E-13 79.2 7.3 212 2-235 2-235 (235)
22 PRK08005 ribulose-phosphate 3- 98.9 6.7E-09 1.7E-13 78.0 6.6 196 14-232 5-209 (210)
23 PRK05581 ribulose-phosphate 3- 98.9 8.1E-09 2.1E-13 77.5 7.0 199 13-235 7-219 (220)
24 TIGR01163 rpe ribulose-phospha 98.7 9E-08 2.3E-12 70.7 7.9 191 16-231 6-216 (216)
25 cd00429 RPE Ribulose-5-phospha 98.7 7.4E-08 1.9E-12 71.3 7.1 192 16-231 6-211 (211)
26 PRK09722 allulose-6-phosphate 98.6 1.5E-07 3.9E-12 69.2 7.0 198 15-236 6-219 (227)
27 COG0036 Rpe Pentose-5-phosphat 98.6 4.5E-07 1.1E-11 66.2 9.2 200 13-235 7-218 (220)
28 KOG3111 consensus 98.6 1.3E-06 3.3E-11 63.2 11.2 200 14-236 9-219 (224)
29 pfam00834 Ribul_P_3_epim Ribul 98.1 4.8E-06 1.2E-10 59.5 4.6 183 16-221 6-201 (201)
30 PRK13125 trpA tryptophan synth 98.0 0.00013 3.4E-09 50.2 11.3 202 10-235 2-240 (247)
31 PRK13127 consensus 97.7 0.0008 2.1E-08 45.1 10.4 199 17-236 17-253 (262)
32 PRK13113 consensus 97.7 0.0012 3E-08 44.0 11.0 206 10-236 14-258 (263)
33 PRK13135 consensus 97.6 0.0029 7.4E-08 41.5 12.8 199 17-236 23-260 (267)
34 pfam00290 Trp_syntA Tryptophan 97.6 0.0063 1.6E-07 39.3 14.4 199 17-236 15-252 (258)
35 PRK13124 consensus 97.6 0.0019 4.7E-08 42.8 11.6 198 17-236 15-252 (257)
36 cd04722 TIM_phosphate_binding 97.6 0.00033 8.5E-09 47.6 7.5 170 16-215 2-200 (200)
37 CHL00200 trpA tryptophan synth 97.6 0.0045 1.1E-07 40.3 13.3 199 17-236 21-259 (263)
38 PRK13117 consensus 97.6 0.0076 1.9E-07 38.8 14.7 198 17-235 23-263 (268)
39 PRK13139 consensus 97.6 0.00095 2.4E-08 44.7 9.4 205 10-235 12-254 (254)
40 PRK13129 consensus 97.6 0.001 2.6E-08 44.5 9.4 201 17-235 25-262 (267)
41 PRK13111 trpA tryptophan synth 97.5 0.0028 7E-08 41.7 11.5 198 17-235 15-251 (256)
42 PRK13118 consensus 97.5 0.0059 1.5E-07 39.5 13.0 205 11-236 15-259 (269)
43 PRK13114 consensus 97.5 0.01 2.5E-07 38.1 14.0 198 17-236 19-256 (266)
44 PRK13140 consensus 97.5 0.0016 4.1E-08 43.2 9.8 207 10-236 11-257 (257)
45 PRK08227 aldolase; Validated 97.5 0.0014 3.6E-08 43.5 9.1 202 11-234 48-273 (291)
46 PRK13119 consensus 97.5 0.012 3E-07 37.6 15.1 206 10-236 12-258 (261)
47 PRK13126 consensus 97.4 0.0026 6.7E-08 41.8 10.1 188 9-220 2-214 (237)
48 PRK13131 consensus 97.4 0.013 3.3E-07 37.3 13.8 209 11-237 9-255 (257)
49 PRK13121 consensus 97.4 0.014 3.6E-07 37.1 14.6 197 17-235 23-260 (265)
50 cd00958 DhnA Class I fructose- 97.4 0.0012 3E-08 44.1 7.7 202 15-234 2-234 (235)
51 PRK13133 consensus 97.3 0.013 3.3E-07 37.3 12.7 197 17-234 21-266 (267)
52 pfam04131 NanE Putative N-acet 97.3 0.0038 9.8E-08 40.7 9.4 36 197-235 153-191 (192)
53 PRK13137 consensus 97.2 0.021 5.3E-07 36.0 13.9 197 17-234 31-264 (266)
54 PRK06512 thiamine-phosphate py 97.2 0.0043 1.1E-07 40.4 9.4 182 10-236 10-214 (221)
55 PRK13112 consensus 97.2 0.024 6.1E-07 35.6 13.5 199 17-236 24-268 (279)
56 PRK13123 consensus 97.2 0.018 4.7E-07 36.3 12.1 199 17-236 21-252 (256)
57 PRK13122 consensus 97.1 0.014 3.6E-07 37.0 11.4 194 18-236 10-238 (242)
58 PRK13138 consensus 97.1 0.026 6.6E-07 35.3 12.8 200 17-235 19-260 (264)
59 PRK13597 imidazole glycerol ph 97.1 0.013 3.3E-07 37.3 11.1 208 9-233 1-244 (252)
60 PRK07226 fructose-bisphosphate 97.1 0.0029 7.5E-08 41.5 7.6 141 81-234 97-251 (266)
61 PRK13132 consensus 97.1 0.028 7.1E-07 35.2 13.2 180 17-219 17-228 (246)
62 PRK13115 consensus 97.1 0.027 6.8E-07 35.3 12.3 198 17-236 30-262 (269)
63 PRK02615 thiamine-phosphate py 97.0 0.014 3.5E-07 37.2 10.5 63 164-238 282-344 (345)
64 cd04724 Tryptophan_synthase_al 96.9 0.011 2.8E-07 37.7 9.1 197 17-234 6-241 (242)
65 pfam02679 ComA (2R)-phospho-3- 96.9 0.012 3E-07 37.6 9.2 97 22-118 23-131 (245)
66 PRK01130 N-acetylmannosamine-6 96.9 0.015 3.8E-07 36.9 9.5 182 10-235 2-221 (222)
67 pfam05690 ThiG Thiazole biosyn 96.8 0.048 1.2E-06 33.6 12.2 192 10-235 6-224 (246)
68 PRK07455 keto-hydroxyglutarate 96.8 0.044 1.1E-06 33.9 11.6 194 1-237 1-209 (210)
69 PRK13134 consensus 96.8 0.053 1.4E-06 33.3 13.3 195 17-232 25-256 (257)
70 PRK13116 consensus 96.7 0.052 1.3E-06 33.4 11.3 184 17-219 23-240 (278)
71 cd04728 ThiG Thiazole synthase 96.7 0.064 1.6E-06 32.8 13.8 194 10-235 7-225 (248)
72 TIGR01949 AroFGH_arch predicte 96.6 0.011 2.9E-07 37.7 7.2 211 2-233 3-247 (259)
73 pfam01884 PcrB PcrB family. Th 96.6 0.0038 9.6E-08 40.8 4.7 61 163-233 170-230 (231)
74 PRK00208 thiG thiazole synthas 96.6 0.074 1.9E-06 32.4 12.0 194 10-235 8-226 (256)
75 PRK13136 consensus 96.6 0.025 6.5E-07 35.4 8.8 205 10-235 9-250 (253)
76 PRK07114 keto-hydroxyglutarate 96.5 0.076 1.9E-06 32.4 11.1 204 1-236 4-216 (223)
77 COG1830 FbaB DhnA-type fructos 96.3 0.012 3.1E-07 37.5 6.1 142 82-234 102-257 (265)
78 PRK04169 geranylgeranylglycery 96.3 0.0042 1.1E-07 40.5 3.6 57 161-229 171-227 (229)
79 cd02812 PcrB_like PcrB_like pr 96.2 0.011 2.8E-07 37.8 5.4 76 141-228 134-216 (219)
80 COG3010 NanE Putative N-acetyl 96.2 0.064 1.6E-06 32.8 9.2 183 9-236 11-228 (229)
81 PRK00043 thiE thiamine-phospha 96.2 0.039 9.8E-07 34.2 8.0 183 8-237 2-209 (210)
82 PRK06552 keto-hydroxyglutarate 96.1 0.071 1.8E-06 32.5 8.8 178 1-219 1-188 (209)
83 COG0352 ThiE Thiamine monophos 96.0 0.049 1.2E-06 33.6 7.6 58 167-236 151-208 (211)
84 PRK13120 consensus 95.9 0.15 3.7E-06 30.5 10.0 197 17-235 27-272 (285)
85 cd04727 pdxS PdxS is a subunit 95.9 0.016 4E-07 36.8 4.9 181 17-237 11-248 (283)
86 cd02809 alpha_hydroxyacid_oxid 95.8 0.026 6.6E-07 35.4 5.8 79 147-235 185-283 (299)
87 PRK04180 pyridoxine biosynthes 95.8 0.016 4.1E-07 36.7 4.5 181 17-237 20-257 (293)
88 PRK09140 2-dehydro-3-deoxy-6-p 95.7 0.2 5.2E-06 29.6 9.8 183 8-235 5-204 (206)
89 COG0214 SNZ1 Pyridoxine biosyn 95.6 0.022 5.7E-07 35.8 4.7 40 197-236 217-259 (296)
90 PRK07695 transcriptional regul 95.5 0.038 9.6E-07 34.3 5.4 177 12-236 1-199 (202)
91 pfam01070 FMN_dh FMN-dependent 95.5 0.039 9.9E-07 34.2 5.5 79 147-235 182-280 (301)
92 cd02811 IDI-2_FMN Isopentenyl- 95.3 0.067 1.7E-06 32.7 6.3 81 146-236 193-311 (326)
93 cd03332 LMO_FMN L-Lactate 2-mo 95.3 0.026 6.6E-07 35.4 4.2 63 147-219 266-342 (383)
94 cd04737 LOX_like_FMN L-Lactate 95.3 0.028 7.1E-07 35.2 4.3 61 148-218 235-309 (351)
95 COG0159 TrpA Tryptophan syntha 95.3 0.27 7E-06 28.7 12.0 201 17-236 23-261 (265)
96 PRK11197 lldD L-lactate dehydr 95.2 0.031 7.9E-07 34.9 4.3 63 147-219 258-334 (381)
97 PRK06015 keto-hydroxyglutarate 95.2 0.3 7.6E-06 28.5 10.5 190 3-236 5-210 (212)
98 cd00564 TMP_TenI Thiamine mono 94.9 0.097 2.5E-06 31.7 6.1 55 166-232 142-196 (196)
99 PRK02145 consensus 94.8 0.047 1.2E-06 33.7 4.4 208 9-233 1-250 (257)
100 PRK02621 consensus 94.8 0.37 9.4E-06 27.9 9.5 141 81-233 87-247 (254)
101 pfam01081 Aldolase KDPG and KH 94.7 0.31 7.8E-06 28.4 8.4 170 7-219 2-181 (196)
102 PRK03220 consensus 94.7 0.32 8.2E-06 28.3 8.4 141 81-233 88-251 (257)
103 pfam03060 NPD 2-nitropropane d 94.6 0.41 1.1E-05 27.6 9.3 108 80-220 104-227 (330)
104 PRK09517 multifunctional thiam 94.6 0.27 7E-06 28.7 7.8 190 14-235 5-207 (738)
105 PRK13585 1-(5-phosphoribosyl)- 94.6 0.18 4.6E-06 29.9 6.9 159 53-232 64-239 (240)
106 PRK03512 thiamine-phosphate py 94.5 0.16 4.1E-06 30.3 6.5 47 177-234 160-206 (211)
107 cd04730 NPD_like 2-Nitropropan 94.5 0.33 8.3E-06 28.2 8.1 107 80-220 70-191 (236)
108 cd02809 alpha_hydroxyacid_oxid 94.5 0.36 9.1E-06 28.0 8.3 113 107-235 87-225 (299)
109 TIGR00007 TIGR00007 phosphorib 94.5 0.071 1.8E-06 32.5 4.6 125 80-221 85-235 (241)
110 cd04731 HisF The cyclase subun 94.4 0.46 1.2E-05 27.3 8.5 143 80-233 83-242 (243)
111 cd04736 MDH_FMN Mandelate dehy 94.4 0.061 1.6E-06 33.0 4.1 62 147-219 249-323 (361)
112 cd02922 FCB2_FMN Flavocytochro 94.2 0.067 1.7E-06 32.7 4.0 79 147-235 226-327 (344)
113 CHL00162 thiG thiamin biosynth 94.1 0.13 3.2E-06 30.9 5.2 195 9-235 13-239 (267)
114 KOG1606 consensus 94.1 0.12 3.1E-06 31.0 5.1 41 197-237 218-261 (296)
115 PRK11858 aksA trans-homoaconit 94.0 0.53 1.3E-05 26.9 8.3 167 22-212 23-218 (378)
116 PRK09310 aroDE bifunctional 3- 93.9 0.58 1.5E-05 26.6 10.4 104 14-119 1-108 (477)
117 KOG3157 consensus 93.9 0.31 7.9E-06 28.4 6.9 160 50-225 56-241 (244)
118 PRK13587 1-(5-phosphoribosyl)- 93.9 0.23 5.9E-06 29.2 6.2 124 80-220 88-227 (234)
119 COG0106 HisA Phosphoribosylfor 93.7 0.2 5.1E-06 29.6 5.7 134 80-230 87-238 (241)
120 PRK13802 bifunctional indole-3 93.6 0.49 1.2E-05 27.1 7.5 36 198-233 221-259 (695)
121 TIGR00343 TIGR00343 pyridoxine 93.5 0.15 3.8E-06 30.5 4.7 49 182-236 205-256 (298)
122 COG2022 ThiG Uncharacterized e 93.4 0.17 4.3E-06 30.1 4.9 192 12-235 16-232 (262)
123 PRK08104 consensus 93.4 0.7 1.8E-05 26.1 11.4 186 6-235 8-209 (212)
124 PRK11840 bifunctional sulfur c 93.4 0.16 4E-06 30.3 4.7 190 12-235 84-300 (327)
125 TIGR02146 LysS_fung_arch homoc 93.3 0.42 1.1E-05 27.5 6.8 175 23-212 18-220 (355)
126 cd00945 Aldolase_Class_I Class 93.3 0.36 9.1E-06 28.0 6.4 164 23-213 11-200 (201)
127 PRK00507 deoxyribose-phosphate 93.1 0.26 6.7E-06 28.9 5.4 159 23-212 20-206 (221)
128 cd04729 NanE N-acetylmannosami 93.1 0.34 8.6E-06 28.1 6.0 170 10-219 6-211 (219)
129 cd04735 OYE_like_4_FMN Old yel 92.9 0.45 1.1E-05 27.4 6.4 140 72-228 136-327 (353)
130 cd00959 DeoC 2-deoxyribose-5-p 92.9 0.29 7.3E-06 28.6 5.4 158 23-211 15-200 (203)
131 PRK00278 trpC indole-3-glycero 92.7 0.28 7.1E-06 28.7 5.1 35 199-233 222-259 (261)
132 KOG0538 consensus 92.4 0.22 5.6E-06 29.4 4.3 63 146-218 235-311 (363)
133 pfam00218 IGPS Indole-3-glycer 92.4 0.47 1.2E-05 27.2 6.0 56 164-229 197-253 (254)
134 TIGR03470 HpnH hopanoid biosyn 92.3 0.42 1.1E-05 27.6 5.6 126 22-163 59-199 (318)
135 PRK06512 thiamine-phosphate py 92.2 0.15 3.8E-06 30.5 3.2 64 145-219 77-142 (221)
136 TIGR03217 4OH_2_O_val_ald 4-hy 92.2 1 2.6E-05 25.0 9.2 169 23-212 22-218 (333)
137 TIGR01768 GGGP-family geranylg 92.1 0.13 3.4E-06 30.8 2.9 61 161-231 175-241 (242)
138 TIGR00959 ffh signal recogniti 92.1 1.1 2.7E-05 24.9 8.3 119 53-187 145-287 (439)
139 cd00331 IGPS Indole-3-glycerol 92.1 0.94 2.4E-05 25.3 7.2 189 3-229 11-216 (217)
140 PRK05437 isopentenyl pyrophosp 92.1 0.32 8.2E-06 28.3 4.8 58 168-235 254-317 (351)
141 PRK02615 thiamine-phosphate py 91.8 0.16 4.1E-06 30.3 3.0 64 143-218 203-268 (345)
142 PRK08195 4-hydroxy-2-ketovaler 91.8 1.1 2.9E-05 24.7 9.4 168 23-212 23-219 (337)
143 PRK01659 consensus 91.6 1.2 3E-05 24.6 8.8 141 81-233 87-246 (252)
144 PRK01362 putative translaldola 91.6 1.2 3.1E-05 24.6 11.7 197 17-237 3-212 (214)
145 pfam00977 His_biosynth Histidi 91.4 0.88 2.2E-05 25.5 6.4 148 53-220 62-226 (229)
146 PRK06857 consensus 91.3 1.3 3.3E-05 24.4 11.5 188 6-237 5-208 (209)
147 PRK13523 NADPH dehydrogenase N 91.3 0.18 4.5E-06 30.0 2.8 146 73-236 135-328 (337)
148 COG1646 Predicted phosphate-bi 91.2 0.35 8.9E-06 28.1 4.2 58 165-235 181-238 (240)
149 PRK04302 triosephosphate isome 91.2 0.24 6.1E-06 29.1 3.4 135 77-234 72-222 (223)
150 PRK02083 imidazole glycerol ph 91.2 1.3 3.4E-05 24.3 11.1 148 74-233 74-246 (253)
151 PRK06852 aldolase; Validated 91.0 1.3 3.2E-05 24.4 6.9 132 88-232 132-285 (303)
152 cd02931 ER_like_FMN Enoate red 90.9 1.4 3.6E-05 24.1 8.2 142 73-229 143-350 (382)
153 PRK05718 keto-hydroxyglutarate 90.9 1.4 3.6E-05 24.1 11.3 188 6-237 8-211 (212)
154 cd01573 modD_like ModD; Quinol 90.8 0.39 1E-05 27.7 4.2 64 148-224 196-266 (272)
155 PRK00915 2-isopropylmalate syn 90.7 1.5 3.7E-05 24.0 7.2 171 22-212 23-226 (511)
156 cd02803 OYE_like_FMN_family Ol 90.6 1.1 2.8E-05 24.8 6.3 137 74-228 135-325 (327)
157 PRK12330 oxaloacetate decarbox 90.6 1.5 3.8E-05 24.0 8.6 117 77-214 97-232 (499)
158 cd04732 HisA HisA. Phosphorib 90.6 1.5 3.8E-05 24.0 9.5 184 22-226 29-232 (234)
159 cd01572 QPRTase Quinolinate ph 90.5 0.45 1.1E-05 27.4 4.2 63 148-221 195-261 (268)
160 cd02930 DCR_FMN 2,4-dienoyl-Co 90.4 1.6 4E-05 23.8 9.5 138 74-228 131-320 (353)
161 PRK00748 1-(5-phosphoribosyl)- 90.2 1.1 2.8E-05 24.9 6.0 137 81-231 86-239 (241)
162 KOG4175 consensus 90.1 1.6 4.1E-05 23.7 8.7 196 10-225 15-250 (268)
163 pfam01487 DHquinase_I Type I 3 90.0 1.6 4E-05 23.8 6.7 103 16-119 1-117 (222)
164 cd04733 OYE_like_2_FMN Old yel 90.0 1 2.6E-05 25.0 5.7 130 80-227 152-335 (338)
165 PRK00043 thiE thiamine-phospha 89.8 0.33 8.4E-06 28.2 3.1 61 147-219 72-134 (210)
166 cd06822 PLPDE_III_YBL036c_euk 89.7 0.95 2.4E-05 25.2 5.4 159 50-219 48-227 (227)
167 cd02933 OYE_like_FMN Old yello 89.6 1.5 3.9E-05 23.9 6.3 140 73-228 145-328 (338)
168 PRK04128 1-(5-phosphoribosyl)- 89.4 1.3 3.3E-05 24.4 5.9 54 167-230 174-227 (228)
169 PRK09389 (R)-citramalate synth 89.4 1.8 4.5E-05 23.5 6.6 170 22-212 20-215 (487)
170 pfam00682 HMGL-like HMGL-like. 89.4 1.9 4.7E-05 23.4 8.8 168 22-212 11-211 (237)
171 PRK08782 consensus 88.9 2 5.1E-05 23.1 11.8 186 7-236 11-215 (219)
172 PRK05848 nicotinate-nucleotide 88.9 0.63 1.6E-05 26.4 3.9 64 147-221 193-263 (272)
173 TIGR00693 thiE thiamine-phosph 88.6 0.49 1.2E-05 27.1 3.2 166 23-230 13-210 (210)
174 PRK13957 indole-3-glycerol-pho 88.3 1.6 4E-05 23.9 5.7 52 166-230 192-246 (247)
175 PRK00311 panB 3-methyl-2-oxobu 88.1 2.3 5.8E-05 22.8 6.6 129 65-198 80-217 (266)
176 TIGR00693 thiE thiamine-phosph 88.1 0.66 1.7E-05 26.3 3.7 62 145-218 72-139 (210)
177 cd02932 OYE_YqiM_FMN Old yello 87.8 1.4 3.5E-05 24.2 5.1 137 73-227 147-334 (336)
178 PRK07428 nicotinate-nucleotide 87.7 0.93 2.4E-05 25.3 4.2 64 147-221 205-275 (285)
179 PRK08904 consensus 87.5 2.5 6.3E-05 22.6 11.2 184 8-235 5-204 (207)
180 COG0134 TrpC Indole-3-glycerol 87.4 1.6 4E-05 23.8 5.2 33 199-231 218-253 (254)
181 pfam00724 Oxidored_FMN NADH:fl 87.1 1.5 3.7E-05 24.0 4.9 52 166-228 278-330 (336)
182 pfam02581 TMP-TENI Thiamine mo 87.1 0.7 1.8E-05 26.1 3.3 40 166-217 141-180 (180)
183 PRK05742 nicotinate-nucleotide 87.1 0.99 2.5E-05 25.1 4.1 63 148-221 202-268 (277)
184 COG0413 PanB Ketopantoate hydr 86.9 2.1 5.3E-05 23.1 5.6 154 65-235 78-252 (268)
185 pfam02548 Pantoate_transf Keto 86.9 2.6 6.7E-05 22.4 6.1 129 65-198 79-216 (261)
186 COG0274 DeoC Deoxyribose-phosp 86.8 2.4 6E-05 22.7 5.9 144 22-185 21-193 (228)
187 pfam01791 DeoC DeoC/LacD famil 86.8 2.7 6.9E-05 22.3 7.7 189 15-219 2-230 (231)
188 cd01568 QPRTase_NadC Quinolina 86.6 1.2 3.1E-05 24.6 4.3 64 147-221 193-262 (269)
189 COG0149 TpiA Triosephosphate i 86.6 2.8 7E-05 22.3 6.8 196 23-233 15-250 (251)
190 cd06557 KPHMT-like Ketopantoat 86.3 2.9 7.3E-05 22.2 6.4 164 65-235 75-249 (254)
191 pfam01729 QRPTase_C Quinolinat 86.3 0.93 2.4E-05 25.3 3.6 60 151-221 96-162 (169)
192 cd00452 KDPG_aldolase KDPG and 86.2 2.9 7.3E-05 22.1 8.6 165 11-218 2-175 (190)
193 cd00956 Transaldolase_FSA Tran 86.2 2.9 7.4E-05 22.1 11.2 193 17-233 2-208 (211)
194 PRK07259 dihydroorotate dehydr 86.1 2.9 7.4E-05 22.1 8.7 34 200-236 249-282 (301)
195 PRK12655 fructose-6-phosphate 85.4 3.1 8E-05 21.9 12.0 195 17-234 3-211 (220)
196 PRK08072 nicotinate-nucleotide 85.1 1.5 3.8E-05 24.0 4.1 63 148-221 201-267 (277)
197 KOG2335 consensus 85.0 1.8 4.6E-05 23.4 4.5 87 12-99 73-177 (358)
198 COG0352 ThiE Thiamine monophos 84.9 1 2.6E-05 25.1 3.2 59 146-215 72-132 (211)
199 PRK12290 thiE thiamine-phospha 84.9 1.1 2.9E-05 24.8 3.5 37 200-236 380-416 (439)
200 PRK06559 nicotinate-nucleotide 84.7 1.5 3.8E-05 24.0 4.0 64 148-223 210-277 (290)
201 PRK09427 bifunctional indole-3 84.5 3.4 8.8E-05 21.6 8.2 24 207-230 232-255 (459)
202 PRK03512 thiamine-phosphate py 84.5 0.87 2.2E-05 25.5 2.7 114 64-214 7-129 (211)
203 cd04734 OYE_like_3_FMN Old yel 84.2 1.9 4.9E-05 23.3 4.4 53 166-229 277-330 (343)
204 PRK08385 nicotinate-nucleotide 84.2 1.5 3.9E-05 23.9 3.9 63 148-221 196-267 (279)
205 PRK06543 nicotinate-nucleotide 84.2 1.7 4.4E-05 23.6 4.2 62 149-221 207-272 (281)
206 cd00564 TMP_TenI Thiamine mono 84.0 0.97 2.5E-05 25.2 2.8 58 147-215 64-123 (196)
207 COG0157 NadC Nicotinate-nucleo 83.6 2.3 5.9E-05 22.7 4.6 62 149-221 202-269 (280)
208 PRK09282 pyruvate carboxylase 83.2 3.9 1E-04 21.3 7.4 119 77-213 97-229 (580)
209 PRK05211 consensus 83.1 3.9 0.0001 21.3 5.8 188 24-233 24-241 (248)
210 PRK05286 dihydroorotate dehydr 83.0 2 5.1E-05 23.1 4.1 196 10-237 53-335 (336)
211 PRK13586 1-(5-phosphoribosyl)- 83.0 4 0.0001 21.2 6.0 126 80-220 84-223 (231)
212 PRK13384 delta-aminolevulinic 83.0 4 0.0001 21.2 8.9 78 141-219 144-255 (323)
213 PRK06106 nicotinate-nucleotide 81.5 2.7 6.9E-05 22.3 4.3 62 149-221 206-271 (281)
214 TIGR01463 mtaA_cmuA methyltran 81.3 1.1 2.7E-05 24.9 2.2 183 26-236 131-347 (350)
215 TIGR00559 pdxJ pyridoxal phosp 81.2 4.6 0.00012 20.8 8.5 137 19-168 68-220 (265)
216 TIGR02090 LEU1_arch isopropylm 81.0 1.9 4.9E-05 23.3 3.4 133 22-174 19-186 (371)
217 PRK11613 folP dihydropteroate 80.6 4.8 0.00012 20.7 8.0 84 22-106 35-129 (282)
218 pfam02310 B12-binding B12 bind 80.5 4.9 0.00012 20.6 8.5 39 167-216 73-113 (121)
219 PRK00553 ribose-phosphate pyro 79.4 2.4 6.1E-05 22.7 3.5 38 6-44 9-47 (340)
220 KOG1643 consensus 78.7 5.5 0.00014 20.3 7.3 48 72-119 68-124 (247)
221 PRK12376 putative translaldola 78.0 5.8 0.00015 20.1 9.9 190 10-219 3-206 (238)
222 TIGR01037 pyrD_sub1_fam dihydr 77.4 3.4 8.7E-05 21.6 3.8 169 14-235 95-289 (308)
223 TIGR02151 IPP_isom_2 isopenten 77.3 6.1 0.00015 20.0 7.9 179 17-234 97-321 (349)
224 COG1465 Predicted alternative 77.1 3.2 8.1E-05 21.8 3.5 27 146-172 159-185 (376)
225 PRK04281 consensus 75.9 6.7 0.00017 19.8 6.7 141 81-233 87-247 (254)
226 PRK03378 ppnK inorganic polyph 75.6 2.3 5.9E-05 22.7 2.5 91 40-131 11-109 (292)
227 cd04723 HisA_HisF Phosphoribos 75.4 6.9 0.00017 19.7 7.0 170 36-227 50-231 (233)
228 TIGR00676 fadh2 5,10-methylene 75.4 6.9 0.00017 19.7 6.9 119 79-212 17-191 (302)
229 PRK11815 tRNA-dihydrouridine s 74.8 7.1 0.00018 19.6 8.8 182 9-220 7-239 (333)
230 PRK12653 fructose-6-phosphate 74.6 7.2 0.00018 19.6 10.9 194 17-234 3-211 (220)
231 PRK12581 oxaloacetate decarbox 74.6 7.2 0.00018 19.6 7.9 171 23-213 33-237 (468)
232 PRK06978 nicotinate-nucleotide 74.3 5.4 0.00014 20.4 4.1 61 149-220 213-277 (288)
233 cd04747 OYE_like_5_FMN Old yel 74.1 7.3 0.00019 19.5 7.8 155 70-228 134-342 (361)
234 COG1456 CdhE CO dehydrogenase/ 73.7 7.5 0.00019 19.4 7.7 131 78-227 147-292 (467)
235 PRK09432 metF 5,10-methylenete 73.1 7.8 0.0002 19.3 6.4 17 80-96 42-58 (296)
236 TIGR03151 enACPred_II putative 73.1 7.8 0.0002 19.3 6.9 37 55-98 101-137 (307)
237 PRK04759 consensus 73.0 4.8 0.00012 20.7 3.6 91 41-132 12-111 (294)
238 PRK09016 quinolinate phosphori 72.7 7.9 0.0002 19.3 6.1 62 149-222 222-287 (296)
239 PRK00366 ispG 4-hydroxy-3-meth 72.6 8 0.0002 19.3 6.6 58 103-161 118-178 (367)
240 cd02808 GltS_FMN Glutamate syn 72.0 5.6 0.00014 20.3 3.7 16 202-217 302-317 (392)
241 PRK05283 deoxyribose-phosphate 71.5 8.4 0.00022 19.1 5.3 57 142-205 148-213 (258)
242 cd06824 PLPDE_III_Yggs_like Py 71.4 7.2 0.00018 19.5 4.2 151 50-220 51-224 (224)
243 TIGR01091 upp uracil phosphori 71.3 5.4 0.00014 20.3 3.5 28 156-184 161-188 (213)
244 PRK02747 consensus 70.8 8.8 0.00022 19.0 7.1 148 74-233 74-249 (257)
245 cd04738 DHOD_2_like Dihydrooro 69.3 4 0.0001 21.2 2.5 193 8-233 45-326 (327)
246 cd06556 ICL_KPHMT Members of t 68.9 9.6 0.00024 18.7 6.2 130 64-198 74-210 (240)
247 PRK07896 nicotinate-nucleotide 68.8 8.3 0.00021 19.1 4.0 61 149-220 212-279 (288)
248 PRK09250 fructose-bisphosphate 68.3 9.9 0.00025 18.7 6.3 152 78-237 147-339 (348)
249 pfam00490 ALAD Delta-aminolevu 68.0 10 0.00026 18.6 8.6 30 188-217 215-251 (322)
250 cd00954 NAL N-Acetylneuraminic 67.7 10 0.00026 18.6 7.0 48 154-214 156-206 (288)
251 PRK10605 N-ethylmaleimide redu 67.0 10 0.00027 18.5 8.8 30 200-229 306-336 (362)
252 pfam00701 DHDPS Dihydrodipicol 67.0 11 0.00027 18.5 6.2 68 154-235 155-237 (289)
253 PRK12344 putative alpha-isopro 66.9 11 0.00027 18.5 6.7 42 22-63 24-66 (530)
254 PRK01231 ppnK inorganic polyph 66.8 4.7 0.00012 20.8 2.4 92 40-132 10-109 (296)
255 PRK03170 dihydrodipicolinate s 66.7 11 0.00027 18.5 6.1 36 14-49 72-108 (292)
256 PRK06096 molybdenum transport 66.5 9.7 0.00025 18.7 4.0 60 149-220 203-269 (284)
257 pfam04481 DUF561 Protein of un 65.8 11 0.00028 18.3 6.7 35 198-232 198-232 (243)
258 PRK12331 oxaloacetate decarbox 65.7 11 0.00028 18.3 12.6 174 23-214 24-229 (463)
259 PRK12656 fructose-6-phosphate 65.6 11 0.00028 18.3 11.1 195 17-235 3-214 (222)
260 PRK08255 salicylyl-CoA 5-hydro 65.4 11 0.00029 18.3 9.5 141 72-230 548-739 (770)
261 TIGR02631 xylA_Arthro xylose i 65.3 11 0.00029 18.3 5.4 110 81-237 36-163 (390)
262 TIGR03249 KdgD 5-dehydro-4-deo 64.1 12 0.0003 18.1 5.9 15 83-97 92-106 (296)
263 TIGR01497 kdpB K+-transporting 63.8 12 0.00031 18.1 5.8 100 73-193 408-520 (675)
264 TIGR00339 sopT sulfate adenyly 63.6 4.7 0.00012 20.7 2.0 23 194-216 293-322 (424)
265 COG1304 idi Isopentenyl diphos 63.0 6.5 0.00016 19.9 2.6 77 150-236 234-330 (360)
266 cd02801 DUS_like_FMN Dihydrour 62.9 13 0.00032 18.0 6.9 30 198-227 193-226 (231)
267 cd00384 ALAD_PBGS Porphobilino 62.7 13 0.00032 18.0 8.6 28 190-217 209-243 (314)
268 cd00408 DHDPS-like Dihydrodipi 62.0 13 0.00033 17.9 6.2 48 154-214 151-201 (281)
269 PRK13753 dihydropteroate synth 61.9 13 0.00033 17.9 6.6 86 22-108 22-117 (279)
270 PRK07565 dihydroorotate dehydr 61.8 13 0.00033 17.9 5.0 33 201-235 255-287 (333)
271 TIGR00381 cdhD CO dehydrogenas 61.7 4.3 0.00011 21.0 1.4 18 82-99 149-166 (401)
272 PRK04554 consensus 61.3 10 0.00026 18.6 3.3 30 13-42 5-34 (327)
273 TIGR02082 metH methionine synt 60.9 14 0.00035 17.8 5.6 152 64-227 196-378 (1265)
274 pfam03599 CdhD CO dehydrogenas 60.3 14 0.00035 17.7 8.4 76 99-193 105-186 (384)
275 cd00951 KDGDH 5-dehydro-4-deox 60.2 14 0.00036 17.7 6.1 13 84-96 88-100 (289)
276 PRK02231 ppnK inorganic polyph 60.1 5.2 0.00013 20.4 1.7 67 53-120 3-72 (272)
277 TIGR02134 transald_staph trans 59.8 9 0.00023 18.9 2.8 174 13-218 4-203 (237)
278 TIGR03572 WbuZ glycosyl amidat 59.7 14 0.00036 17.6 4.3 124 81-215 87-228 (232)
279 COG0854 PdxJ Pyridoxal phospha 59.7 14 0.00036 17.6 3.9 72 22-101 71-156 (243)
280 PRK03708 ppnK inorganic polyph 59.3 9.3 0.00024 18.8 2.8 79 41-120 7-86 (278)
281 pfam07905 PucR Purine cataboli 59.3 9.5 0.00024 18.8 2.9 39 173-214 40-78 (122)
282 cd00635 PLPDE_III_YBL036c_like 58.8 15 0.00038 17.5 6.1 149 50-219 50-222 (222)
283 TIGR01457 HAD-SF-IIA-hyp2 HAD- 58.6 15 0.00037 17.6 3.7 61 50-111 20-103 (251)
284 PRK01911 ppnK inorganic polyph 58.1 11 0.00028 18.4 3.0 81 52-132 18-109 (290)
285 COG5016 Pyruvate/oxaloacetate 56.9 16 0.0004 17.3 6.5 116 77-212 98-229 (472)
286 cd00950 DHDPS Dihydrodipicolin 56.5 16 0.00041 17.3 6.1 74 23-97 19-102 (284)
287 cd00517 ATPS ATP-sulfurylase ( 56.2 8.5 0.00022 19.1 2.2 25 194-218 233-264 (356)
288 PRK10773 murF UDP-N-acetylmura 56.2 16 0.00041 17.3 4.0 19 146-164 374-392 (452)
289 cd00952 CHBPH_aldolase Trans-o 56.0 16 0.00042 17.2 5.5 40 14-53 79-119 (309)
290 TIGR01769 GGGP geranylgeranylg 55.7 10 0.00026 18.5 2.6 43 162-214 170-212 (212)
291 PRK01259 ribose-phosphate pyro 55.3 16 0.0004 17.4 3.4 18 205-222 258-275 (309)
292 PRK04149 sat sulfate adenylylt 54.8 9.8 0.00025 18.7 2.3 27 194-220 259-292 (390)
293 PRK00830 consensus 54.8 17 0.00044 17.1 4.6 150 73-233 77-266 (273)
294 COG0167 PyrD Dihydroorotate de 54.7 17 0.00044 17.1 8.4 133 76-235 108-289 (310)
295 PRK09856 fructoselysine 3-epim 54.7 17 0.00044 17.1 4.0 101 22-125 13-152 (276)
296 COG2185 Sbm Methylmalonyl-CoA 54.5 17 0.00044 17.1 5.7 47 72-123 24-72 (143)
297 pfam01180 DHO_dh Dihydroorotat 54.4 17 0.00044 17.1 6.5 57 166-237 229-289 (290)
298 cd00953 KDG_aldolase KDG (2-ke 54.0 18 0.00045 17.0 4.7 16 201-216 186-201 (279)
299 PRK02155 ppnK inorganic polyph 53.8 14 0.00036 17.7 3.0 92 40-132 11-110 (291)
300 cd02071 MM_CoA_mut_B12_BD meth 53.8 18 0.00045 17.0 5.8 50 72-124 11-60 (122)
301 cd01987 USP_OKCHK USP domain i 53.5 18 0.00046 17.0 7.4 24 102-125 15-38 (124)
302 cd02067 B12-binding B12 bindin 53.2 18 0.00046 17.0 7.3 97 72-212 11-107 (119)
303 PRK02812 ribose-phosphate pyro 53.1 14 0.00037 17.6 2.9 38 5-43 13-50 (331)
304 COG0422 ThiC Thiamine biosynth 52.7 18 0.00047 16.9 5.7 17 82-98 146-162 (432)
305 cd02929 TMADH_HD_FMN Trimethyl 52.4 8.7 0.00022 19.0 1.8 53 166-229 281-334 (370)
306 COG1902 NemA NADH:flavin oxido 52.1 19 0.00048 16.8 8.9 195 15-229 72-333 (363)
307 PRK05259 consensus 51.9 17 0.00044 17.1 3.2 14 205-218 259-272 (310)
308 PRK10812 putative metallodepen 51.9 18 0.00046 17.0 3.3 31 15-45 38-68 (265)
309 COG0042 tRNA-dihydrouridine sy 51.8 19 0.00049 16.8 9.9 188 8-223 6-237 (323)
310 TIGR02814 pfaD_fam PfaD family 51.3 12 0.0003 18.1 2.3 18 197-214 235-255 (449)
311 COG1820 NagA N-acetylglucosami 51.1 20 0.0005 16.7 4.9 35 156-190 245-280 (380)
312 cd00003 PNPsynthase Pyridoxine 51.1 14 0.00036 17.6 2.7 72 22-101 70-155 (234)
313 COG1570 XseA Exonuclease VII, 51.1 12 0.0003 18.2 2.3 57 154-216 135-202 (440)
314 PRK04539 ppnK inorganic polyph 50.5 16 0.00042 17.2 2.9 91 40-131 11-114 (296)
315 TIGR01459 HAD-SF-IIA-hyp4 HAD- 49.9 20 0.00052 16.6 4.7 14 97-110 24-37 (243)
316 cd02070 corrinoid_protein_B12- 49.7 21 0.00052 16.6 8.8 35 175-229 164-198 (201)
317 PTZ00145 phosphoribosylpyropho 49.7 15 0.00038 17.5 2.6 24 207-230 339-362 (443)
318 COG0826 Collagenase and relate 49.2 21 0.00053 16.6 7.7 69 36-109 25-110 (347)
319 COG0325 Predicted enzyme with 49.0 21 0.00054 16.5 6.3 150 51-223 53-228 (228)
320 pfam07287 DUF1446 Protein of u 48.9 12 0.00031 18.1 2.0 16 201-216 153-168 (362)
321 TIGR03282 methan_mark_13 putat 48.5 21 0.00055 16.5 4.2 44 166-213 272-325 (352)
322 cd04739 DHOD_like Dihydroorota 48.5 21 0.00055 16.5 4.9 37 197-235 246-285 (325)
323 PRK03620 5-dehydro-4-deoxygluc 48.1 22 0.00055 16.4 6.5 14 83-96 88-101 (296)
324 PRK05265 pyridoxine 5'-phospha 48.0 22 0.00056 16.4 3.2 72 23-102 74-159 (240)
325 PRK05038 consensus 47.9 14 0.00037 17.6 2.3 18 205-222 263-280 (315)
326 cd04823 ALAD_PBGS_aspartate_ri 47.5 22 0.00056 16.4 8.8 28 189-216 213-247 (320)
327 PRK01313 rnpA ribonuclease P; 47.4 22 0.00057 16.4 3.3 33 204-236 86-118 (133)
328 COG4956 Integral membrane prot 47.3 12 0.00031 18.1 1.8 44 52-95 216-261 (356)
329 pfam01964 ThiC ThiC family. Th 47.1 22 0.00057 16.3 5.3 22 78-99 140-161 (421)
330 PRK04117 consensus 46.9 16 0.00041 17.3 2.4 15 23-37 12-26 (309)
331 TIGR00644 recJ single-stranded 46.9 23 0.00058 16.3 3.2 102 4-108 47-159 (705)
332 COG1751 Uncharacterized conser 46.8 23 0.00058 16.3 7.7 55 77-132 14-69 (186)
333 TIGR02708 L_lactate_ox L-lacta 46.8 23 0.00058 16.3 5.0 85 143-237 238-342 (368)
334 PRK12457 2-dehydro-3-deoxyphos 46.4 23 0.00059 16.3 5.0 94 8-109 10-129 (281)
335 PRK02458 ribose-phosphate pyro 46.2 23 0.00059 16.3 3.4 35 8-43 4-38 (323)
336 KOG0840 consensus 45.7 9.8 0.00025 18.7 1.2 67 159-226 201-269 (275)
337 TIGR01979 sufS cysteine desulf 44.9 24 0.00062 16.1 3.6 65 110-186 160-235 (409)
338 PRK08999 hypothetical protein; 44.6 19 0.00048 16.9 2.5 156 67-235 108-277 (312)
339 PRK09283 delta-aminolevulinic 44.4 25 0.00063 16.1 8.2 27 189-215 214-247 (321)
340 pfam01207 Dus Dihydrouridine s 44.3 25 0.00063 16.1 7.4 23 75-97 64-86 (309)
341 COG0119 LeuA Isopropylmalate/h 44.3 25 0.00063 16.1 9.5 172 21-212 20-221 (409)
342 pfam12176 MtaB Methanol-cobala 44.0 25 0.00064 16.0 3.2 35 67-101 134-168 (460)
343 TIGR01212 TIGR01212 radical SA 43.5 26 0.00065 16.0 4.9 66 15-95 110-183 (307)
344 pfam01747 ATP-sulfurylase ATP- 43.4 15 0.00038 17.5 1.8 25 194-218 190-221 (310)
345 PRK09206 pyruvate kinase; Prov 42.8 26 0.00067 15.9 6.2 78 149-235 179-264 (470)
346 PRK02039 consensus 42.8 26 0.00067 15.9 3.2 30 9-39 1-30 (316)
347 cd00537 MTHFR Methylenetetrahy 42.2 27 0.00068 15.9 4.4 10 153-162 158-167 (274)
348 pfam01645 Glu_synthase Conserv 41.9 23 0.00057 16.3 2.5 12 205-216 293-304 (367)
349 PRK01506 consensus 41.3 27 0.00068 15.9 2.8 30 13-43 9-38 (317)
350 PRK12999 pyruvate carboxylase; 41.0 28 0.00071 15.7 7.0 74 23-97 690-767 (1147)
351 COG0528 PyrH Uridylate kinase 40.9 28 0.00071 15.7 7.7 46 175-225 125-174 (238)
352 TIGR01697 PNPH-PUNA-XAPA inosi 40.8 25 0.00064 16.0 2.6 55 70-129 160-229 (266)
353 pfam08981 consensus 40.6 28 0.00072 15.7 7.7 53 76-128 11-64 (181)
354 COG0541 Ffh Signal recognition 40.6 28 0.00072 15.7 5.0 25 10-34 127-154 (451)
355 PRK01203 prefoldin subunit alp 40.5 23 0.0006 16.2 2.4 35 203-237 64-99 (130)
356 TIGR00737 nifR3_yhdG putative 40.1 29 0.00073 15.7 4.2 133 76-232 82-256 (336)
357 TIGR02967 guan_deamin guanine 39.9 29 0.00074 15.6 3.9 129 45-188 65-217 (426)
358 PRK13352 thiamine biosynthesis 39.5 29 0.00075 15.6 5.3 22 78-99 145-166 (433)
359 pfam04551 GcpE GcpE protein. I 39.5 29 0.00075 15.6 6.3 19 142-160 148-166 (345)
360 PRK07107 inositol-5-monophosph 38.4 30 0.00078 15.5 10.2 36 179-224 356-392 (497)
361 PRK01999 consensus 38.4 27 0.00068 15.9 2.4 15 205-219 262-276 (311)
362 TIGR02075 pyrH_bact uridylate 38.4 31 0.00078 15.5 6.8 47 174-225 123-173 (236)
363 TIGR02956 TMAO_torS TMAO reduc 37.2 19 0.00048 16.9 1.5 22 152-173 861-882 (1052)
364 pfam02219 MTHFR Methylenetetra 37.1 32 0.00081 15.4 6.6 12 152-163 168-179 (286)
365 PTZ00333 triosephosphate isome 36.7 32 0.00083 15.3 7.8 196 9-219 2-240 (252)
366 PRK05537 bifunctional sulfate 36.7 32 0.00083 15.3 3.0 22 195-216 261-289 (568)
367 pfam00809 Pterin_bind Pterin b 36.5 33 0.00083 15.3 8.0 143 22-186 16-172 (208)
368 COG2768 Uncharacterized Fe-S c 36.5 26 0.00066 15.9 2.1 34 36-69 38-79 (354)
369 cd04740 DHOD_1B_like Dihydroor 36.5 33 0.00083 15.3 6.5 195 7-236 5-279 (296)
370 TIGR00574 dnl1 DNA ligase I, A 36.4 29 0.00074 15.6 2.4 58 143-216 396-456 (705)
371 PRK06247 pyruvate kinase; Prov 36.1 33 0.00084 15.3 5.1 80 147-235 178-261 (477)
372 cd02068 radical_SAM_B12_BD B12 36.0 33 0.00085 15.2 4.2 41 167-218 60-101 (127)
373 COG2070 Dioxygenases related t 35.7 25 0.00063 16.1 1.9 65 145-219 137-218 (336)
374 cd00381 IMPDH IMPDH: The catal 35.6 34 0.00086 15.2 6.8 38 177-224 199-237 (325)
375 pfam07302 AroM AroM protein. T 35.5 34 0.00086 15.2 4.8 52 155-213 126-184 (221)
376 PRK10415 tRNA-dihydrouridine s 35.4 34 0.00087 15.2 10.2 190 9-228 6-238 (321)
377 pfam01225 Mur_ligase Mur ligas 35.3 34 0.00087 15.2 3.3 55 170-232 10-73 (76)
378 cd04742 NPD_FabD 2-Nitropropan 35.3 34 0.00087 15.2 2.8 19 197-215 228-249 (418)
379 KOG1144 consensus 35.1 26 0.00067 15.9 2.0 13 10-22 472-484 (1064)
380 PRK06843 inositol-5-monophosph 34.9 35 0.00088 15.1 7.9 37 178-224 259-296 (404)
381 pfam00478 IMPDH IMP dehydrogen 34.1 36 0.00091 15.1 7.7 31 178-218 329-359 (467)
382 PRK01033 imidazole glycerol ph 33.8 36 0.00092 15.0 4.4 135 71-217 71-229 (253)
383 PRK01132 consensus 33.3 29 0.00074 15.6 2.0 32 204-235 251-282 (286)
384 PRK04147 N-acetylneuraminate l 33.3 37 0.00094 15.0 7.4 33 64-97 74-106 (294)
385 cd06542 GH18_EndoS-like Endo-b 33.3 37 0.00094 15.0 3.6 96 83-180 21-150 (255)
386 TIGR03239 GarL 2-dehydro-3-deo 32.9 37 0.00095 14.9 3.9 151 74-235 68-248 (249)
387 PRK10116 universal stress prot 32.8 37 0.00095 14.9 10.2 48 13-60 4-58 (142)
388 COG0821 gcpE 1-hydroxy-2-methy 32.8 37 0.00096 14.9 7.2 19 54-72 64-83 (361)
389 pfam01136 Peptidase_U32 Peptid 32.7 37 0.00096 14.9 5.9 35 201-236 163-198 (232)
390 PRK12862 malic enzyme; Reviewe 31.9 39 0.00099 14.8 11.0 96 16-115 113-216 (761)
391 pfam02601 Exonuc_VII_L Exonucl 31.8 39 0.00099 14.8 2.5 22 197-220 248-273 (295)
392 cd02911 arch_FMN Archeal FMN-b 31.7 39 0.00099 14.8 7.3 115 76-219 84-225 (233)
393 PRK03670 competence damage-ind 31.6 39 0.001 14.8 3.3 60 39-98 4-68 (252)
394 PRK08202 purine nucleoside pho 31.4 39 0.001 14.8 2.7 20 77-96 91-110 (272)
395 TIGR00789 flhB_rel FlhB domain 31.4 22 0.00057 16.4 1.1 37 53-89 30-76 (84)
396 PRK10481 hypothetical protein; 31.3 40 0.001 14.8 4.8 13 201-213 175-187 (224)
397 COG0646 MetH Methionine syntha 31.1 40 0.001 14.7 5.9 98 81-188 147-260 (311)
398 PRK07807 inositol-5-monophosph 30.5 41 0.001 14.7 7.4 37 178-224 333-370 (479)
399 cd00502 DHQase_I Type I 3-dehy 30.1 41 0.0011 14.6 8.1 105 14-119 1-118 (225)
400 KOG0618 consensus 30.0 42 0.0011 14.6 3.6 25 209-233 716-754 (1081)
401 TIGR02875 spore_0_A sporulatio 29.9 42 0.0011 14.6 5.8 76 80-174 38-123 (270)
402 PRK04923 ribose-phosphate pyro 29.9 42 0.0011 14.6 3.0 31 11-42 4-34 (319)
403 TIGR02735 purC_vibrio phosphor 29.9 30 0.00078 15.5 1.6 22 212-233 339-360 (365)
404 TIGR01919 hisA-trpF bifunction 29.7 42 0.0011 14.6 2.3 61 157-225 177-239 (246)
405 TIGR00010 TIGR00010 hydrolase, 29.7 42 0.0011 14.6 7.5 31 24-54 80-111 (269)
406 PRK10558 alpha-dehydro-beta-de 29.5 42 0.0011 14.6 4.1 38 74-111 75-114 (256)
407 PRK02649 ppnK inorganic polyph 29.4 42 0.0011 14.6 2.7 93 40-132 7-115 (305)
408 PRK13210 putative L-xylulose 5 29.4 43 0.0011 14.6 6.4 95 22-118 16-150 (284)
409 cd04250 AAK_NAGK-C AAK_NAGK-C: 29.4 43 0.0011 14.6 10.6 62 25-108 3-64 (279)
410 COG1064 AdhP Zn-dependent alco 29.1 43 0.0011 14.5 5.3 46 76-121 152-197 (339)
411 PRK05826 pyruvate kinase; Prov 29.0 43 0.0011 14.5 6.0 79 148-235 179-265 (461)
412 TIGR02066 dsrB sulfite reducta 28.7 20 0.00052 16.6 0.5 56 19-80 43-105 (366)
413 KOG4849 consensus 28.4 28 0.00073 15.7 1.2 35 40-74 82-116 (498)
414 COG4187 RocB Arginine degradat 28.3 42 0.0011 14.6 2.1 40 178-217 196-238 (553)
415 PRK10840 transcriptional regul 27.9 45 0.0012 14.4 2.2 95 12-110 26-123 (216)
416 PRK12861 malic enzyme; Reviewe 27.9 45 0.0012 14.4 11.8 54 16-71 108-163 (762)
417 PRK08666 5'-methylthioadenosin 27.8 45 0.0012 14.4 2.4 39 66-104 46-89 (261)
418 TIGR02482 PFKA_ATP 6-phosphofr 27.8 45 0.0012 14.4 3.7 83 67-155 71-160 (302)
419 PRK00934 ribose-phosphate pyro 27.3 46 0.0012 14.3 2.9 13 206-218 255-267 (286)
420 PRK00139 murE UDP-N-acetylmura 27.3 46 0.0012 14.3 3.8 63 166-235 355-419 (481)
421 pfam03740 PdxJ Pyridoxal phosp 27.3 46 0.0012 14.3 4.3 78 17-102 66-157 (239)
422 COG1891 Uncharacterized protei 27.2 47 0.0012 14.3 5.1 91 22-115 8-113 (235)
423 PRK11929 putative bifunctional 26.7 47 0.0012 14.3 8.0 43 188-233 392-436 (953)
424 COG0800 Eda 2-keto-3-deoxy-6-p 26.7 47 0.0012 14.3 11.0 191 1-236 1-208 (211)
425 PRK12443 uridylate kinase; Rev 26.7 47 0.0012 14.2 5.5 60 161-225 110-174 (247)
426 PRK10550 tRNA-dihydrouridine s 26.0 49 0.0012 14.2 2.1 126 73-222 71-232 (312)
427 COG2046 MET3 ATP sulfurylase ( 25.8 39 0.001 14.8 1.6 26 195-220 258-290 (397)
428 TIGR01296 asd_B aspartate-semi 25.8 40 0.001 14.7 1.6 42 165-215 269-310 (350)
429 PRK13671 hypothetical protein; 25.7 49 0.0013 14.1 3.0 15 81-95 84-98 (298)
430 COG2069 CdhD CO dehydrogenase/ 25.6 38 0.00096 14.9 1.5 19 81-99 155-173 (403)
431 cd00885 cinA Competence-damage 25.5 50 0.0013 14.1 3.2 59 39-98 3-66 (170)
432 PRK04165 acetyl-CoA decarbonyl 25.4 50 0.0013 14.1 6.5 23 23-45 46-68 (454)
433 pfam01959 DHQS 3-dehydroquinat 25.3 50 0.0013 14.1 2.1 62 91-170 86-150 (343)
434 PRK13670 hypothetical protein; 25.3 50 0.0013 14.1 3.1 22 75-96 159-184 (390)
435 KOG2334 consensus 25.2 51 0.0013 14.1 4.1 89 10-99 79-185 (477)
436 pfam03102 NeuB NeuB family. Ne 24.6 52 0.0013 14.0 3.5 128 80-236 79-231 (240)
437 TIGR01369 CPSaseII_lrg carbamo 24.6 52 0.0013 14.0 4.4 37 88-128 646-683 (1089)
438 PRK01215 competence damage-ind 24.6 52 0.0013 14.0 2.9 60 38-98 6-70 (264)
439 PRK11320 prpB 2-methylisocitra 23.8 54 0.0014 13.9 11.3 187 8-219 11-239 (292)
440 PRK06242 flavodoxin; Provision 23.7 54 0.0014 13.9 2.2 12 224-235 136-147 (150)
441 PRK02645 ppnK inorganic polyph 23.6 54 0.0014 13.9 2.7 78 40-122 9-89 (304)
442 pfam00574 CLP_protease Clp pro 23.5 54 0.0014 13.9 1.9 17 196-212 162-179 (182)
443 COG2216 KdpB High-affinity K+ 23.4 55 0.0014 13.9 5.9 70 115-184 436-517 (681)
444 smart00854 PGA_cap Bacterial c 23.4 55 0.0014 13.9 3.1 46 165-214 165-212 (239)
445 cd02065 B12-binding_like B12 b 23.2 55 0.0014 13.8 7.8 88 86-219 23-110 (125)
446 pfam05636 DUF795 Protein of un 23.1 55 0.0014 13.8 3.1 22 75-96 160-185 (389)
447 TIGR01344 malate_syn_A malate 22.9 56 0.0014 13.8 2.9 68 26-102 241-315 (522)
448 pfam09587 PGA_cap Bacterial ca 22.9 56 0.0014 13.8 2.9 45 165-213 163-209 (237)
449 cd02810 DHOD_DHPD_FMN Dihydroo 22.8 56 0.0014 13.8 4.9 19 201-219 259-277 (289)
450 PRK03202 6-phosphofructokinase 22.6 57 0.0014 13.8 4.4 101 20-120 13-124 (323)
451 PRK12454 carbamate kinase-like 22.6 57 0.0014 13.8 3.7 58 156-213 160-232 (313)
452 PRK06197 short chain dehydroge 22.5 30 0.00077 15.5 0.5 19 16-34 71-89 (306)
453 PRK11070 ssDNA exonuclease Rec 22.1 58 0.0015 13.7 3.7 88 6-96 62-156 (574)
454 PRK10128 putative aldolase; Pr 21.7 59 0.0015 13.6 5.6 38 74-111 57-96 (250)
455 TIGR01302 IMP_dehydrog inosine 21.4 60 0.0015 13.6 4.6 14 202-215 359-372 (476)
456 TIGR03093 SASP_sspL small, aci 21.3 44 0.0011 14.5 1.1 25 180-206 4-28 (36)
457 PRK05198 2-dehydro-3-deoxyphos 21.2 60 0.0015 13.6 4.3 82 9-98 5-108 (264)
458 TIGR02667 moaB_proteo molybden 21.1 61 0.0015 13.6 3.5 44 52-97 24-70 (163)
459 TIGR01755 flav_wrbA flavoprote 21.1 58 0.0015 13.7 1.7 42 189-231 56-99 (205)
460 PRK12551 ATP-dependent Clp pro 20.8 61 0.0016 13.5 2.1 22 196-217 171-193 (196)
461 cd00311 TIM Triosephosphate is 20.7 62 0.0016 13.5 7.6 188 23-221 12-235 (242)
462 PRK10569 NAD(P)H-dependent FMN 20.6 50 0.0013 14.1 1.3 31 79-111 57-93 (191)
463 pfam01113 DapB_N Dihydrodipico 20.4 63 0.0016 13.5 5.5 27 95-121 4-32 (122)
464 COG1058 CinA Predicted nucleot 20.2 63 0.0016 13.4 2.7 61 38-99 4-69 (255)
465 COG4800 Predicted transcriptio 20.0 64 0.0016 13.4 8.7 82 89-183 74-155 (170)
No 1
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=100.00 E-value=0 Score=484.34 Aligned_cols=225 Identities=40% Similarity=0.595 Sum_probs=216.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 89889996079989999999973885228998689984255899999985154667877640424678987765215675
Q gi|254780453|r 12 KKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGV 91 (238)
Q Consensus 12 k~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~ 91 (238)
|+|||||||+++.+++++++++++|+++++|+|+++|+++|.+++++|++++++||+|+|||||||||+++++.+++||+
T Consensus 2 k~~livAlD~~~~~~~~~l~~~l~~~i~~~Kig~~l~~~~G~~~i~~l~~~g~~iFlDlKl~DIpnTv~~~~~~i~~~g~ 81 (231)
T PRK00230 2 DDRLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRAAAKLGV 81 (231)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99889996489999999999971775529998989986418999999997799689872022654589999999985799
Q ss_pred EEEEEECCCH--HHHHHHHHHC--CCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 0899724604--6777765302--35531046664147776887652012104887654454211024431113410344
Q gi|254780453|r 92 AMLTVHAYPQ--TMRSAVSVVR--DTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVR 167 (238)
Q Consensus 92 d~iTvH~~~~--~l~~~~~~~~--~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~ 167 (238)
|++|||+++| |++++.++.. ..+++++|||+|||+++.++++++++.+++++|.+++.+|.++|++|+||||+|++
T Consensus 82 d~vtvH~~~G~~~l~a~~~~~~~~~~~~kll~Vt~LTS~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dGiVcs~~e~~ 161 (231)
T PRK00230 82 DMVTVHASGGARMMAAAREGLEPGGSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQEAA 161 (231)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCHHHHH
T ss_conf 89998257859999999998871489875999996236898899866757899999999999999969984863888999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 554420244035510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
.+|+.++++|+++|||||+++++.|||+||+||++|+++||||+|||||||+|+||.+++++|+++|.-
T Consensus 162 ~ir~~~~~~~~ivTPGIr~~~~~~~DQ~rv~TP~~Ai~~GAD~iVVGR~I~~s~dP~~a~~~I~~ei~~ 230 (231)
T PRK00230 162 ALREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAEDPAAALEAILAELAG 230 (231)
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 998645987189867727788875674656899999987999999898456899999999999999855
No 2
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase; InterPro: IPR014732 Orotidine 5'-phosphate decarboxylase (OMPdecase) (4.1.1.23 from EC) , catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional proteins. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme..
Probab=100.00 E-value=0 Score=400.81 Aligned_cols=216 Identities=36% Similarity=0.549 Sum_probs=204.6
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCC--EEEECHHHHHCCC-HHHHHHHHH----HCHHHHHHHHHCCHHHHHHHHHHH--
Q ss_conf 8999607998999999997388522--8998689984255-899999985----154667877640424678987765--
Q gi|254780453|r 15 LVVGLDLPTVKEAERIVSILSDTVS--FYKIGYHLSFSGG-LELARDLIS----DGKSVFLDMKLFDIGSSVTAAIEH-- 85 (238)
Q Consensus 15 livALD~~~~~e~l~l~~~l~~~i~--~iKig~~l~~~~G-~~~i~~l~k----~~~~If~D~K~~DIpnTv~~~v~~-- 85 (238)
||||||++|.+|+++++++++++++ ++|+|++++++.| .+++++|++ |||+||+||||+||||||+.+++.
T Consensus 1 L~vALD~~~~~e~l~~a~~~~~~~~v~~~Kvg~~l~~~~~~~~~~~~L~~~~~KHNf~if~D~Kf~DIpnTv~~~~~~G~ 80 (233)
T TIGR01740 1 LIVALDVTTKEEALKLADSLGPEIDVLVIKVGIDLLLSGGYEKIIEELAKLNKKHNFLIFLDLKFADIPNTVKLQYESGV 80 (233)
T ss_pred CEEECCCCCHHHHHHHHHHHCCEEEEEEEECCHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCHHHHHHHHCCC
T ss_conf 96862389989999999750462777777514233332784889999999745688203212031366156899975086
Q ss_pred -HCCCCCEEEEEECCCH--HHHHHHHHHCCC---CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf -2156750899724604--677776530235---5310466641477768876520121048876544542110244311
Q gi|254780453|r 86 -IANMGVAMLTVHAYPQ--TMRSAVSVVRDT---GICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 86 -~~~~g~d~iTvH~~~~--~l~~~~~~~~~~---~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
+.++++|++|||+++| +++++++++++. +.+||+|+.|||+++.|+ ++.+..+..+.+.++++.+.+.|++|+
T Consensus 81 y~~~~~~~~~~vH~~~G~~~~~~~~~~a~~~~~~~~~ll~V~~ltS~g~~d~-~~~~~~~~~~~~~~~A~~~~~~Gl~G~ 159 (233)
T TIGR01740 81 YKIKQGADMVNVHGVAGKESVEAAKEAASEFSTSGRGLLAVTELTSKGSEDL-ELEYGEDTEEKVVEIAKEAKEFGLIGP 159 (233)
T ss_pred CEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 4121774589972015078999999870256666873799987517981338-999888899999999861666533210
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCEECCHHHHHHCCCCEEEECCHHCC-CCCHHHHHHHHH
Q ss_conf 13410344554420244035510113578-6579840036989999659989999853308-888899999999
Q gi|254780453|r 160 VCSPQEVRMVREIVGHNMVIVTPGIRMLG-SATDGQKRFATPETALKYGASHIVVSRPIVR-AADPVSAAQEFQ 231 (238)
Q Consensus 160 V~s~~ei~~ir~~~~~~~~~itPGI~~~~-~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~-a~dP~~aa~~i~ 231 (238)
||++.+.+.+|+..|++|.++|||||+.. ++.+||||++||.+|++.|||+||||||||+ |+||++++++|+
T Consensus 160 ~~~~~~~~~~~~~~G~~~~~~tPGir~~~~g~~~dQ~~~~~~~~a~~~g~D~iiVGR~Iy~~~~dP~~aa~~i~ 233 (233)
T TIGR01740 160 VCSAEEAKEIRKITGSDFLILTPGIRLASKGDADDQQRVVTLEDAIEAGADVIIVGRGIYKKAEDPVEAAKKIR 233 (233)
T ss_pred ECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHCCCCCHHHHHHHCC
T ss_conf 11467786563205887078607714898887888644377899986049989987821013878689998609
No 3
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=395.29 Aligned_cols=226 Identities=41% Similarity=0.614 Sum_probs=215.0
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 57898899960799899999999738852289986899842558999999851546678776404246789877652156
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
..+.|||||||+++.++++++++++.++++++|+|+|+++.+|..+++++++.+++||+|+||||||||++.+++.+.++
T Consensus 9 ~~~~~livaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~ 88 (240)
T COG0284 9 AMSRRLIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADL 88 (240)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 04667499978997799999999710203189976588985138999999970773587410056367999999986543
Q ss_pred CCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 75089972460--4677776530235531046664147776887652012104887654454211024431113410344
Q gi|254780453|r 90 GVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVR 167 (238)
Q Consensus 90 g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~ 167 (238)
|+|++|||+++ +|++++.+.....+.++++||+|||+++.++.++++..++.+.|.++++.+..+|++|+||||++++
T Consensus 89 g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~~ 168 (240)
T COG0284 89 GADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEVA 168 (240)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHH
T ss_conf 78489970767887999999988643866999995798016666541224208999999998724378357872888888
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 554420244035510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
.+|+..+++|.++|||||+ +++.+||+|++||.+|+.+||||+|||||||.|+||.++++++.+++.-
T Consensus 169 ~ir~~~g~~~~iltPGIg~-~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~ 236 (240)
T COG0284 169 AIREILGPDFLILTPGIGA-GSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIAR 236 (240)
T ss_pred HHHHHCCCCCEEECCCCCC-CCCCCCCCCCCCHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9998538896798887276-7677783344498999755897899771232389869999999999987
No 4
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=100.00 E-value=0 Score=394.18 Aligned_cols=214 Identities=41% Similarity=0.609 Sum_probs=204.9
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89996079989999999973885228998689984255899999985154667877640424678987765215675089
Q gi|254780453|r 15 LVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAML 94 (238)
Q Consensus 15 livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~i 94 (238)
||||||+++.+++++++++++++++++|+|++||.++|.+++++|++++++||+|+|||||||||+.+++.++++++|++
T Consensus 1 l~vALD~~~~~~~~~i~~~~~~~v~~~Kig~~l~~~~g~~~i~~l~~~~~~iflDlK~~DI~nTv~~~~~~~~~~~~d~~ 80 (216)
T cd04725 1 LIVALDPPDEEFALALIDALGPYVCAVKVGLELFEAAGPEIVKELRELGFLVFLDLKLGDIPNTVAAAAEALLGLGADAV 80 (216)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 98996489999999999973785629998699997439999999986797786303537805899999999984598899
Q ss_pred EEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 972460--467777653023553104666414777688765201210488765445421102443111341034455442
Q gi|254780453|r 95 TVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREI 172 (238)
Q Consensus 95 TvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ir~~ 172 (238)
|||+++ +|++++++.+++.+.++++|+.|||+++.++++ ++....++++.+++..++++|++|+||||+++..+|+.
T Consensus 81 Tvh~~~G~~~l~~~~~~~~~~~~~vl~V~~lts~~~~~l~~-~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~i~~~ 159 (216)
T cd04725 81 TVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQE-GIPGSLEDLVERLAKLAREAGVDGVVCGATEPEALRRA 159 (216)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH
T ss_conf 98467879999999998643598069999716888789998-85377899999999999861897799886248999985
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 0244035510113578657984003698999965998999985330888889999999
Q gi|254780453|r 173 VGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 173 ~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
.+++++++|||||+|+++ +||+|++||++|+++||||+||||+||+|+||.+++++|
T Consensus 160 ~~~~~~iltPGI~~~~~~-~dq~r~~tp~~a~~~gad~ivVGR~I~~a~~p~~~~~~i 216 (216)
T cd04725 160 LGPDFLILTPGIGAQGSG-DDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEAI 216 (216)
T ss_pred CCCCCEEECCCCCCCCCC-CCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 088617973560577776-688266899999987999999891014899999999729
No 5
>pfam00215 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family. This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834.
Probab=100.00 E-value=0 Score=387.42 Aligned_cols=215 Identities=37% Similarity=0.536 Sum_probs=200.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
Q ss_conf 98899960799899999999738852289986899842558999999851546678776404246789877652156750
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVA 92 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d 92 (238)
++||||||+++.+++++++++++++++++|+|++||.++|.++++++++++++||+|+||||||||++.+++.++++++|
T Consensus 1 p~l~vALD~~~~~~a~~l~~~l~~~v~~iKiG~~l~~~~G~~~i~~l~~~~~~iflDlKl~DI~~Tv~~~~~~~~~~~~d 80 (218)
T pfam00215 1 PNLCVALDVPTLEEALELADELGPYVDIIKVGTPLFEAFGLKLVAELRKHGFLIFLDLKFADIGNTVAKQAKYKAKLGAD 80 (218)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHCCCEEEEEEHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 94999967899999999999827856199988999964699999999986993999721227078999999999856998
Q ss_pred EEEEECCC--HHHHHHHHHHCCCC-CCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 89972460--46777765302355-3104666414777688765201210488765445421102443111341034455
Q gi|254780453|r 93 MLTVHAYP--QTMRSAVSVVRDTG-ICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMV 169 (238)
Q Consensus 93 ~iTvH~~~--~~l~~~~~~~~~~~-~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~i 169 (238)
++|||+++ +|++++++.+++.+ .++++|++|||+++.++++++......+.+...... .+|++|+|||+++...+
T Consensus 81 ~~Tvh~~~G~~~l~~a~~~a~~~~~~~vl~v~~lts~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~V~s~~~~~~~ 158 (218)
T pfam00215 81 IVTVHAYAGDGTLKAAKEAAEEYGGRGLLLVAELSSKGSLDLQEEGDLGYTQEIVHRAADL--AAGVDGVVASATEPEAL 158 (218)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHH--HCCCCEEECCHHHHHHH
T ss_conf 9999157997999999999874399708999946999989999875147299999999974--56785576571677888
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 4420244035510113578657984003698999965998999985330888889999999
Q gi|254780453|r 170 REIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 170 r~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
|+.. ++++++|||||++++..+||+|++||.+|+++||||+|||||||+|+||.+++++|
T Consensus 159 ~~~~-~~~~~vtPGI~~~~~~~~dq~r~~~~~~a~~~Gad~iIVGR~I~~a~dP~~aa~~i 218 (218)
T pfam00215 159 REIR-PDFLILTPGIGLQGGDAGGQQRVTTPAVAKEAGADIIIVGRGITGAGDPVAAARAI 218 (218)
T ss_pred HHHH-CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHCCCCCCHHHHHHHC
T ss_conf 7651-45448537768765437897325899999986999999891005799999999729
No 6
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=100.00 E-value=0 Score=372.52 Aligned_cols=208 Identities=28% Similarity=0.451 Sum_probs=192.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 57898899960799899999999738852289986899842558999999851546678776404246789877652156
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
+||+|||||||+++.+++++++++++++++++|+|++||+++|++++++|++.+ +||+|+||||||||+..+++.+++.
T Consensus 1 mk~~~l~vALD~~~~~~a~~l~~~l~~~i~~iKiG~~l~~~~G~~~i~~l~~~~-~If~DlK~~DIpnTv~~~~~~~~~~ 79 (215)
T PRK13813 1 MKDSRIILALDVYDREEALKIAEELSDYVDAIKVNWPLILASGLSIIRELKQYT-PVIADLKVADIPNTNRLICEKVFEA 79 (215)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHHHHHHHHC-CEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 998887999617999999999998477560999897998754999999999858-9079986244637999999999962
Q ss_pred CCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC---CH
Q ss_conf 75089972460--46777765302355310466641477768876520121048876544542110244311134---10
Q gi|254780453|r 90 GVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS---PQ 164 (238)
Q Consensus 90 g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s---~~ 164 (238)
|+|++|||+++ +|++++++.+++.+.++++|+.||+.+..+ .+++.+.+++++|.++|++|+||| |+
T Consensus 80 ga~~vTvh~~~g~~~i~~a~~~~~~~~~~v~~v~~ls~~g~~~--------~~~~~~~~~~~~a~~~g~~Gvv~~~~~~~ 151 (215)
T PRK13813 80 GADGIIVHGFTGRDSLKAVVEAAKRYGKKVFVVVEMSHPGALE--------FINPVADKLAKLANEAGAFGVVAPATRPE 151 (215)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH--------HHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 9999999256889999999998764198459999846877465--------69999999999999869998997898879
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 34455442024403551011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
|++.+|+.++++|.++|||||++++ +|.+|+++||||+|||||||+|+||.++|++|+++|+
T Consensus 152 ~~~~ir~~~~~~~~ivtPGI~~~~~---------~~~~ai~~Gad~iVVGR~It~A~dP~~aa~~i~~~i~ 213 (215)
T PRK13813 152 RVRAIRRRLGDDLKIISPGIGAQGG---------KASDAIKAGADYVIVGRSIYNAADPREAAKKIREEIL 213 (215)
T ss_pred HHHHHHHHCCCCCEEECCCCCCCCC---------CHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999998628874698576167999---------9899998189999989433589999999999999867
No 7
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=100.00 E-value=2.4e-44 Score=307.35 Aligned_cols=198 Identities=27% Similarity=0.320 Sum_probs=166.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 98899960799899999999738852289986899842558999999851--5466787764042467898776521567
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIANMG 90 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~~~g 90 (238)
..|+||||+++.+++++++++++++++|||+|++||+++|+++|++|++. +++||+|+|+||||||+.. .+++.|
T Consensus 1 p~LqvALD~~~~~~A~~l~~~l~~~v~~iKvG~~L~~~~G~~~v~~lk~~~p~~~IflDlK~~Di~~tva~---~~~~~G 77 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAE---MAFKAG 77 (202)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH---HHHHHC
T ss_conf 90899858999999999999703548799989599997689999999987899979998653361679999---999707
Q ss_pred CEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 5089972460--46777765302355310466641477768876520121048876544542110244311134103445
Q gi|254780453|r 91 VAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRM 168 (238)
Q Consensus 91 ~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ 168 (238)
+|++|||+++ +|++++++.+++.+.. +.|+.+++.+..... .+....+...+.+++.. ++..|..|++++++.
T Consensus 78 ad~~tvh~~~g~~~~~~a~~~a~~~~~~-~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~d---~~~~g~~~~~~~~~~ 152 (202)
T cd04726 78 ADIVTVLGAAPLSTIKKAVKAAKKYGKE-VQVDLIGVEDPEKRA-KLLKLGVDIVILHRGID---AQAAGGWWPEDDLKK 152 (202)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCE-EEEEEECCCCHHHHH-HHHHCCHHHHHHHHHHH---HHHCCCCCHHHHHHH
T ss_conf 9889996668989999999988636967-999983689999999-88856805889998787---775289970899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 54420244035510113578657984003698999965998999985330888889999999
Q gi|254780453|r 169 VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 169 ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
+++..+ ..+.+|||||++ ||++|++.||||+|||||||+|+||+++|++|
T Consensus 153 i~~~~~-~~i~VtpGIr~~-----------t~~~a~~~gad~iVVGR~It~A~dP~~AA~~f 202 (202)
T cd04726 153 VKKLLG-VKVAVAGGITPD-----------TLPEFKKAGADIVIVGRAITGAADPAEAAREF 202 (202)
T ss_pred HHHHCC-CCEEECCCCCHH-----------HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 986239-967889998854-----------09999975999999898345799989999619
No 8
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=100.00 E-value=2.4e-42 Score=294.49 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=175.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 8899960799899999999738852289986899842558999999851--54667877640424678987765215675
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIANMGV 91 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~~~g~ 91 (238)
+||||||+++.++++++++++.++++|+|+|+|||+++|+++|++|++. +++||+|+|+||+|++.. +.+++.|+
T Consensus 1 kLqvALD~~~~~~A~~i~~~~~~~v~~ikvG~~L~~~~G~~~v~~lk~~~p~~~I~~DlK~~D~g~~~~---~~~~~~Ga 77 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKVADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEA---EQAFAAGA 77 (206)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHH---HHHHHCCC
T ss_conf 959995799999999999970355629998969999768999999998789997999950447438999---99997289
Q ss_pred EEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-CCCCHHHHH
Q ss_conf 089972460--46777765302355310466641477768876520121048876544542110244311-134103445
Q gi|254780453|r 92 AMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI-VCSPQEVRM 168 (238)
Q Consensus 92 d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv-V~s~~ei~~ 168 (238)
|++|||+++ +|++++++.+++.+..+++. .++..+ . ..+++.+.+.|++++ ++++.+...
T Consensus 78 d~itVh~~~~~~ti~~a~~~a~~~~~~v~vd-l~~~~~------------~----~~~a~~~~~~g~d~v~~h~g~d~~~ 140 (206)
T TIGR03128 78 DIVTVLGVADDATIKGAVKAAKKHGKEVQVD-LINVKD------------K----VKRAKELKELGADYIGVHTGLDEQA 140 (206)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCC------------H----HHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 8999943489799999999999739979999-747898------------8----9999999975898899502500443
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHH
Q ss_conf 544202440355101135786579840036989999659989999853308888899999999986
Q gi|254780453|r 169 VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAI 234 (238)
Q Consensus 169 ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i 234 (238)
.++...+++..++||++..+....+|.|..||.+|++.||||+|||||||+|+||.++|++|+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~v~gGi~~~t~~~ai~~Gad~vVVGR~It~A~dP~~aa~~i~e~i 206 (206)
T TIGR03128 141 KGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKLI 206 (206)
T ss_pred CCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 267988999999862578736367986835699998669999998961247999999999999749
No 9
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=100.00 E-value=1.5e-38 Score=269.86 Aligned_cols=206 Identities=21% Similarity=0.283 Sum_probs=172.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 57898899960799899999999738852289986899842558999999851--5466787764042467898776521
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
++++.|+||||+.|+++++++++++.++++++|+|+||++++|++.|++|++. ++.||+|+|++|+|+|... .++
T Consensus 1 m~~P~LQvALD~~~l~~Al~ia~~~~~~vdiiEvGtpLi~~~G~~~V~~lr~~~p~k~I~aDlK~~D~g~~ea~---~a~ 77 (216)
T PRK13306 1 MSKPLLQVALDNQDLDSALEDAKKVAEEVDIIEVGTILCLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAK---MAF 77 (216)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHH---HHH
T ss_conf 99973899867899999999999723228999968599998589999999987899979997532365389999---999
Q ss_pred CCCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHH---HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5675089972460--467777653023553104666414777688---76520121048876544542110244311134
Q gi|254780453|r 88 NMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFD---LRESGYEKDISDMVRMRAVQARDIGMGGIVCS 162 (238)
Q Consensus 88 ~~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~---l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s 162 (238)
+.|+|++|||++. ++++++++.+++++..+. |..++.++.+. +.++|.+ +.+.++ +.+.+..|.+||
T Consensus 78 ~aGAd~vtV~g~a~~~Ti~~~~~~A~~~g~~v~-vdl~~~~~~e~a~~~~~lgv~----~~i~H~---~~D~~~~g~~~~ 149 (216)
T PRK13306 78 EAGADWVTVICAAHIPTIKAALKVAKEFNGEIQ-IELYGNWTWEQAQQWRDAGIQ----QVIYHR---SRDAELAGVAWG 149 (216)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEE-EEEECCCCHHHHHHHHHCCCC----EEEEEC---CHHHHHCCCCCC
T ss_conf 728988999566897999999999998098369-997378778889999976998----788760---322442467888
Q ss_pred CHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 103445544202440-355101135786579840036989999659989999853308888899999999986651
Q gi|254780453|r 163 PQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 163 ~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
++++..+|+..+.++ +.++|||++. |...+...|+|++||||+||+|+||.++|++|+++|+.+
T Consensus 150 ~~~~~~ik~l~~~~~~vaVaGGI~~~-----------~~~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I~~~ 214 (216)
T PRK13306 150 EKDLNKVKKLSDMGFKVSVTGGIVPE-----------DLKLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEIAKY 214 (216)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHH-----------HHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77899999976369829985998989-----------999986279989998852358999999999999999986
No 10
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.95 E-value=1.2e-27 Score=199.37 Aligned_cols=206 Identities=19% Similarity=0.282 Sum_probs=159.4
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 57898899960799899999999738852289986899842558999999851--5466787764042467898776521
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
+.++.|+||||..++++++++++++.++++++++|+||+.++|.+.|+.|++. +..|++|+|.+|-|.+-.. .++
T Consensus 1 m~~P~LQvALD~~~l~~A~~~a~~v~~~vDIIE~GTpLik~~G~~aV~~lr~~~P~~~IvAD~Kt~DaG~~Ea~---~a~ 77 (220)
T PRK13305 1 MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQ---QAF 77 (220)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH---HHH
T ss_conf 99861476556799999999999830468899908799998429999999987899879987545262599999---998
Q ss_pred CCCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5675089972460--4677776530235531046664147776---8876520121048876544542110244311134
Q gi|254780453|r 88 NMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS 162 (238)
Q Consensus 88 ~~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s 162 (238)
+.|+|++||.+.. .+++++++.+++++..+. |-.+..++- .++.++|.. ..+.++...++.+| .-.+
T Consensus 78 ~aGAD~vTVlg~A~~~TI~~~~~~a~~~g~~v~-vDli~~~~~~~ak~~~~lgv~----~v~~H~g~D~q~~g---~~~~ 149 (220)
T PRK13305 78 GAGANWMTIICAAPLATVEKGHAVAQSCGGEIQ-IELFGNWTLDDARDWHRIGVR----QAIYHRGRDAQASG---QQWG 149 (220)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHCCCC----EEEEEECCCHHHCC---CCCC
T ss_conf 659988999566897999999999998099899-984589987899999986998----89998333676518---9863
Q ss_pred CHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 103445544202440-355101135786579840036989999659989999853308888899999999986651
Q gi|254780453|r 163 PQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 163 ~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
..++..+++..+.++ +.++.||++. |...+...|+|++||||+||+|+||.++|++|+++|+.+
T Consensus 150 ~~~l~~~k~~~~~~~~vaVAGGI~~~-----------~i~~~~~~~~~ivIvGraIt~A~dP~~aA~~~~~~I~~~ 214 (220)
T PRK13305 150 EADLARMKALSDIGLELSITGGITPA-----------DLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQIDAI 214 (220)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHH-----------HHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 10199999876069649998887888-----------999997169989998936518999999999999999998
No 11
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.95 E-value=4.7e-27 Score=195.47 Aligned_cols=193 Identities=26% Similarity=0.386 Sum_probs=152.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHH-HCCCCCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 78988999607998999999997-38852289986899842558999999851--5466787764042467898776521
Q gi|254780453|r 11 EKKRLVVGLDLPTVKEAERIVSI-LSDTVSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 11 kk~~livALD~~~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
.|+-|+||||+.+++++++++++ +.++++|+++|+||+.++|.+.+++|++. +..|++|+|.+|-|+ -.++.++
T Consensus 2 ~~P~LQvALD~~~l~~A~~ia~e~v~~~~diiE~GTPLIk~eG~~aV~~lr~~fP~~~ivAD~KtmDaG~---~Ea~~A~ 78 (429)
T PRK07028 2 ERPILQVALDLLELDRAIEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDLTIVADMKTMDTGA---MEVEMAA 78 (429)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCH---HHHHHHH
T ss_conf 9860376542488899999999874158759991768888641899999998789986988764045508---8999998
Q ss_pred CCCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC----
Q ss_conf 5675089972460--4677776530235531046664147776887652012104887654454211024431113----
Q gi|254780453|r 88 NMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC---- 161 (238)
Q Consensus 88 ~~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~---- 161 (238)
+.|+|++||.+.. .+++.+++++++++.++++- .+...| .+ ++++.-.+.|++ +||
T Consensus 79 ~AGADivtVlG~a~d~TI~~aV~aA~k~G~~v~vD-lI~v~d---------------~~-~ra~el~~lGvd-~I~vH~G 140 (429)
T PRK07028 79 KAGADVVCILGVADDSTIADAVRAARKYGVLVMAD-LINVPD---------------PV-KRAVELEELGVD-IINVHVG 140 (429)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCC---------------HH-HHHHHHHHCCCC-EEEEEEE
T ss_conf 76998899945788369999999999709889998-558998---------------89-999999970998-8999762
Q ss_pred --------CC-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf --------41-034455442024403551011357865798400369899996599899998533088888999999999
Q gi|254780453|r 162 --------SP-QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 162 --------s~-~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
+| +.++.+++.+ +-.+-+..||+++ |..+++..|||++|||++||+|+||.++|+++++
T Consensus 141 ~D~Q~~g~~p~~~l~~v~~~~-~~~vAVAGGi~~~-----------t~~~~v~~GAdIvIVGgaI~~a~dp~~aAr~ir~ 208 (429)
T PRK07028 141 IDQQMLGKDPLELLKKVSEEV-SIPIAAAGGLDAE-----------TAVKAVEAGADIVIVGGNIYKSADVTGAARDIRE 208 (429)
T ss_pred ECHHHCCCCHHHHHHHHHHHC-CCEEEEECCCCHH-----------HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 335531798499999999755-9718996687877-----------6999997599899989400579997999999999
Q ss_pred HHHH
Q ss_conf 8665
Q gi|254780453|r 233 AISL 236 (238)
Q Consensus 233 ~i~~ 236 (238)
+|..
T Consensus 209 ai~~ 212 (429)
T PRK07028 209 ALDS 212 (429)
T ss_pred HHHC
T ss_conf 9737
No 12
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.5e-25 Score=184.28 Aligned_cols=206 Identities=24% Similarity=0.286 Sum_probs=158.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHC--HHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 78988999607998999999997388522899868998425589999998515--4667877640424678987765215
Q gi|254780453|r 11 EKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDG--KSVFLDMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 11 kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~--~~If~D~K~~DIpnTv~~~v~~~~~ 88 (238)
.+..|+||||.+++++++++++++.++++++++|+||+.++|.+.|+.|++.. ..|.+|+|..|.|.+-.. .+++
T Consensus 2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~---ma~~ 78 (217)
T COG0269 2 SPPLLQVALDLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEAR---MAFE 78 (217)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHH---HHHH
T ss_conf 9751586665577999999999712213299807699998517999999987899868862032240489999---9997
Q ss_pred CCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 675089972460--4677776530235531046664147-776887652012-104887654454211024431113410
Q gi|254780453|r 89 MGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGYE-KDISDMVRMRAVQARDIGMGGIVCSPQ 164 (238)
Q Consensus 89 ~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~~-~~~~~~v~~~a~~a~~~g~~GvV~s~~ 164 (238)
.|+|++||.+.. .+++++.+.+++++..+.. .|.+ ++..+ ...+.. ..+.....++...++..|.. .|-.
T Consensus 79 aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~i--Dl~~~~~~~~-~~~~l~~~gvd~~~~H~g~D~q~~G~~---~~~~ 152 (217)
T COG0269 79 AGADWVTVLGAADDATIKKAIKVAKEYGKEVQI--DLIGVWDPEQ-RAKWLKELGVDQVILHRGRDAQAAGKS---WGED 152 (217)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE--EEECCCCHHH-HHHHHHHHCCCEEEEEECCCHHHHCCC---CCHH
T ss_conf 389879998048889999999999983986999--8516899999-999999718978999704347650899---4177
Q ss_pred HHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 34455442024-4035510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 165 EVRMVREIVGH-NMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 165 ei~~ir~~~~~-~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
++..+|+..+. -.+.++.||.+. +....+..|+|.+||||+||+|+||.+++++|+++|..
T Consensus 153 ~l~~ik~~~~~g~~vAVaGGI~~~-----------~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 153 DLEKIKKLSDLGAKVAVAGGITPE-----------DIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHH-----------HHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHC
T ss_conf 899999862368359986687887-----------88998648997999882214899979999999998642
No 13
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.92 E-value=1.8e-24 Score=178.81 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=149.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 5789889996079989999999973885-2289986899842558999999851--546678776404246789877652
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHI 86 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~ 86 (238)
..-.-|++|||.+++++..++++++... -.++++|+||+.++|.+.|+++++. +..|++|+|.+|.|+.- ++.+
T Consensus 170 ~~ppylqva~d~~~~~~~~~~~~~~p~~d~~IIEaGTPLIK~~G~~aV~~iRe~fPd~~IvADlKTmDaG~lE---a~mA 246 (392)
T PRK13307 170 WDPPYLQVALDLPDLEEVERVLSELPQSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLE---ARMA 246 (392)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHH---HHHH
T ss_conf 5887147875588889999999718865628999085888986789999999878998899854203542688---8888
Q ss_pred CCCCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 15675089972460--4677776530235531046664147776--8876520121048876544542110244311134
Q gi|254780453|r 87 ANMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDD--FDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS 162 (238)
Q Consensus 87 ~~~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~--~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s 162 (238)
++.|+|++||.+.. .+++++++.+++++.++++- |....+ +-.+++... .+-...+.....+.. | .+
T Consensus 247 a~AGADivtVlG~A~~sTI~~aikeA~k~G~~v~vD--lInV~dpv~ra~eLklg--~DiI~lH~giD~Q~~---~--~~ 317 (392)
T PRK13307 247 ADATADAVVISGLAPISTIEKAIHEAQKTGIYSILD--MLNVEDPVKLLESLKVK--PDVVELHRGIDEEGT---E--HA 317 (392)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEE--ECCCCCHHHHHHHHCCC--CCEEEEEECCCHHHC---C--CC
T ss_conf 875998899956798789999999999709799998--34788889999984446--988999854126403---6--87
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 1034455442024403551011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 163 PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 163 ~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
..++..+++..++-++-+..||++. |..++++.|||++||||+||+|+||..+|++|.++++
T Consensus 318 ~~~l~~i~~~~~~~~VAVAGGI~~e-----------t~~~~~~~gadIvIVG~aIT~S~Dp~~AAreil~~~~ 379 (392)
T PRK13307 318 WGNIPEIKKAAGKILVAVAGGVRVE-----------KVEEALKAGADILVVGRAITKSKDVRRAAEQFLNKLN 379 (392)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHCC
T ss_conf 4569999974268059997788888-----------8999984699899989121378998999999998737
No 14
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.92 E-value=5.1e-24 Score=175.83 Aligned_cols=215 Identities=20% Similarity=0.131 Sum_probs=161.4
Q ss_pred CCCCCEEEEEECCC----------------HHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH------CHHHH
Q ss_conf 57898899960799----------------899999999738852289986899842558999999851------54667
Q gi|254780453|r 10 DEKKRLVVGLDLPT----------------VKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD------GKSVF 67 (238)
Q Consensus 10 ~kk~~livALD~~~----------------~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~------~~~If 67 (238)
.+++.|||.||..- .+-...+++.+.+++|+||....||..+|.++++.|.+. +.+++
T Consensus 13 ~~~S~LCVGLDPd~e~iP~~~~~~~~~~~i~~f~k~IIdaT~d~v~AyKPn~AffEa~G~~G~~~L~~~i~~i~~~ipvI 92 (478)
T PRK05500 13 QNQSLLVVGLDPNPEMMPGRYSSQSLIQQLWSWLKFIIEETADLVCAYKPTLGFYQALGSPGLELLLKVLAAIPPHIPII 92 (478)
T ss_pred HCCCEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 70986999968895778642267306789999999999963684129885489998317889999999999714598289
Q ss_pred HHHHHCCHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHCC-CCHHHHH
Q ss_conf 877640424678987765215-6750899724604677776530235531046664147-776887652012-1048876
Q gi|254780453|r 68 LDMKLFDIGSSVTAAIEHIAN-MGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGYE-KDISDMV 144 (238)
Q Consensus 68 ~D~K~~DIpnTv~~~v~~~~~-~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~~-~~~~~~v 144 (238)
+|.|.+|| ||...+.+++++ |++|.+|| +|+|..+.++..-.+.-+-+-|-.+|| .+..++|+.-.. .++.+.|
T Consensus 93 ~DaKRGDI-~Ts~~YA~~~f~~~~~DAvTv--nPYmG~Dsv~PFl~~~~KgvfvL~~TSNpgs~d~Q~~~~~~~pLY~~V 169 (478)
T PRK05500 93 LDAKHGDL-NTSTIFAKTIFEQWQVDAVTL--SPYAGQDHVAPFLVYPDKGVFILCHTSNPGAEALQEYPTQENPFYLQV 169 (478)
T ss_pred EECCCCCH-HHHHHHHHHHHHHCCCCEEEE--CCCCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHCCCCCCCHHHHH
T ss_conf 87364145-899999999875479887984--465675543143316997479998269978788971847898289999
Q ss_pred HHHHHHHHHCCCCCCC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCC------EEEECC
Q ss_conf 5445421102443111---3410344554420244035510113578657984003698999965998------999985
Q gi|254780453|r 145 RMRAVQARDIGMGGIV---CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGAS------HIVVSR 215 (238)
Q Consensus 145 ~~~a~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD------~iVVGR 215 (238)
.+.+......+--|+| +.|.+++++|++. ++..++.|||++||++. ++++++|-+ .|-|-|
T Consensus 170 ~~~~~~W~~~~~~~lVVGAT~p~~l~~iR~~~-P~~~lLvPGiGAQGGdL---------~~~l~aGLn~~G~GllIpv~r 239 (478)
T PRK05500 170 VKEAKTWGTPEQLGLEVGTTNPEVLAKIRQIA-PERLILLRSIWAEGGNL---------NQILTAGLNSNGDGLLIPVPQ 239 (478)
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC-CCCEEECCCCCCCCCCH---------HHHHHHCCCCCCCEEEEECCH
T ss_conf 99999719988679997779899999999868-99878726746675599---------999983478899777896898
Q ss_pred HHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3308888899999999986651
Q gi|254780453|r 216 PIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 216 ~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
.|.++.||.++++..+++|+.+
T Consensus 240 ~~l~~~~~~~~~~~l~~~in~~ 261 (478)
T PRK05500 240 DLLGSANLKEQVKSLREEINQI 261 (478)
T ss_pred HHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8855999899999999999999
No 15
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.88 E-value=1.2e-21 Score=160.50 Aligned_cols=222 Identities=26% Similarity=0.284 Sum_probs=153.4
Q ss_pred CCCCCCCCCCEEEEEECC---------C-----HHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHH-------HHC
Q ss_conf 123115789889996079---------9-----8999999997388522899868998425589999998-------515
Q gi|254780453|r 5 LIIDVDEKKRLVVGLDLP---------T-----VKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLI-------SDG 63 (238)
Q Consensus 5 ~~~~~~kk~~livALD~~---------~-----~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~-------k~~ 63 (238)
+.-.+.++++|||.||.. + .+-..++++.+.+++++||....||..+|.+++..|. +.+
T Consensus 6 L~~~i~~~~~LCVGlDP~~~~lp~~~~~~~~~l~~F~~~iIdat~~~v~a~Kpq~AffE~~G~~G~~~Le~~i~~~~~~~ 85 (277)
T PRK00125 6 LREAVERRGSLCVGLDPHPELLPAGLTGDADGIFEFCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG 85 (277)
T ss_pred HHHHHHHHCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf 99999974992799898966661325775899999999999974060358627789999828514999999999998769
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCC--CCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHC--
Q ss_conf 4667877640424678987765215--675089972460--4677776530235531046664147-77688765201--
Q gi|254780453|r 64 KSVFLDMKLFDIGSSVTAAIEHIAN--MGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGY-- 136 (238)
Q Consensus 64 ~~If~D~K~~DIpnTv~~~v~~~~~--~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~-- 136 (238)
.++++|.|..|||||...+.+++++ |++|.+||+-.- +.++--.+.+.+.+..++.. .+|| .+..++|+...
T Consensus 86 ~~vI~DaKRGDIGsT~~aYA~a~f~~~~~aDAvTvnPYmG~dsl~Pfl~~a~~~~kgvFvL-~~TSNpgs~d~Q~~~~~~ 164 (277)
T PRK00125 86 VLVIADAKRGDIGSTAEAYAKAWFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVL-CRTSNPGGSDLQFLDTAD 164 (277)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEEEE-EECCCCCHHHHHHHHCCC
T ss_conf 8499963434727799999999853857788689647668330089999998559859999-826998778776302579
Q ss_pred CCCHHHHHHHHHHH-HHH---CCCCCCC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHC---
Q ss_conf 21048876544542-110---2443111---3410344554420244035510113578657984003698999965---
Q gi|254780453|r 137 EKDISDMVRMRAVQ-ARD---IGMGGIV---CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKY--- 206 (238)
Q Consensus 137 ~~~~~~~v~~~a~~-a~~---~g~~GvV---~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~--- 206 (238)
..++.+.|-+.+.. ... .+-.|+| +-|++++.+|+.. ++..++.||||.||++.. ++...
T Consensus 165 g~~ly~~va~~~~~~~~~~~~~~~vG~VVGAT~p~~~~~ir~~~-p~~~~LiPG~GAQGg~~~---------~~~~~~~~ 234 (277)
T PRK00125 165 GRPLYQHVADLAADLNNAYLGYGSIGLVVGATFPPELAAVRKIV-GDMPLLIPGIGAQGGDAE---------ATVRAGGA 234 (277)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHC-CCCEEEECCCCCCCCCHH---------HHHHHHCC
T ss_conf 96799999999998625667777448999537647789999867-997598256303578999---------99986465
Q ss_pred -CCC-EEEECCHHCCCCC-------HHHHHHHHHHHHHHH
Q ss_conf -998-9999853308888-------899999999986651
Q gi|254780453|r 207 -GAS-HIVVSRPIVRAAD-------PVSAAQEFQRAISLI 237 (238)
Q Consensus 207 -GaD-~iVVGR~I~~a~d-------P~~aa~~i~~~i~~~ 237 (238)
|.- .+-+.|+|+.|.+ .+++|++++++|+..
T Consensus 235 ~~~g~lvnsSR~I~~a~~~~~~~~aa~~~a~~~r~~in~~ 274 (277)
T PRK00125 235 AGNGMIPNSSRAILYAGPGKDFAEAARAAAERMRDAINAA 274 (277)
T ss_pred CCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8884699858899825898229999999999999999997
No 16
>KOG1377 consensus
Probab=99.86 E-value=3.5e-23 Score=170.42 Aligned_cols=215 Identities=19% Similarity=0.249 Sum_probs=147.3
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHH-HHHHHH----HHCHHHHHHHHHCCHHHHHHH
Q ss_conf 311578988999607998999999997388522899868998425589-999998----515466787764042467898
Q gi|254780453|r 7 IDVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLE-LARDLI----SDGKSVFLDMKLFDIGSSVTA 81 (238)
Q Consensus 7 ~~~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~-~i~~l~----k~~~~If~D~K~~DIpnTv~~ 81 (238)
+.|.++++||++.|.....+++..+.+++|++|..|.|.|.|.+++.. ..+.|+ ++.+.||+|+||+||||||.-
T Consensus 24 ~m~~kqtnL~~~~d~~~~~~ll~~~~~~Gpf~l~sk~h~di~~df~~~~~~k~L~aLA~a~~f~I~edrkffDigntvg~ 103 (261)
T KOG1377 24 LMMKKQTNLCLAVDLFLERELLQLALRFGPFILKSKTHSDIFFDFSLFNSGKDLRALAQAYAFLIFEDRKFFDIGNTVGL 103 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
T ss_conf 98874543388899999999999999649758631665730123520013799999999888998854210351110031
Q ss_pred H----HHHHCCCCCEEEEEECCCH--HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7----7652156750899724604--677776530235531046664147776887652012104887654454211024
Q gi|254780453|r 82 A----IEHIANMGVAMLTVHAYPQ--TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIG 155 (238)
Q Consensus 82 ~----v~~~~~~g~d~iTvH~~~~--~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g 155 (238)
+ +.++..| +|.+++|+.++ ...+..+..-+.+. .=|+.++..++.+.. -....+-+.....+.- ...-
T Consensus 104 qY~gg~~kia~w-adl~n~h~v~g~~i~~g~~rk~~k~~~-egG~lllAems~kg~---L~~~dy~ea~~aI~ee-~~d~ 177 (261)
T KOG1377 104 QYKGGPLKIASW-ADLVNAHGVPGRGIIKGLNRKLLKDHG-EGGVLLLAELSSKGS---LITGDYTEAATAIAEE-DIDF 177 (261)
T ss_pred CCCCCHHHHHHH-HHHHHCCCCCCCHHHHHHHHHCCCCCC-CCCEEEEEEECCCCC---EEEHHHHHHHHHHHHH-HHCH
T ss_conf 005521788899-988845685660389988650044688-772599987246771---4602488999999984-3121
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH-HCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 4311134103445544202440355101135786579840036989999-65998999985330888889999999998
Q gi|254780453|r 156 MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL-KYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 156 ~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
+.|+||..- --.+..++++|||+.+.-+..+-.|+|.+|.+.| ..|+|++||||+||.+..|++++++|++.
T Consensus 178 ~~G~v~g~~------~~ldrq~l~~tpgv~~d~~~d~lgqqy~~p~e~I~~~~~dIiivgrglt~a~~~~~~~e~YRq~ 250 (261)
T KOG1377 178 VNGFVAGSI------VALDRQELIMTPGVELDAAGDNLGQQYRLPVEVIVSLGSDIIIVGRGLTAASKPVQAIERYRQA 250 (261)
T ss_pred HEEEEEEEE------EECCHHHHCCCCCCCCCHHHCCHHHHHCCCHHHHEECCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 104884214------4056776216888763300000221316737752015761899768644354847999999999
No 17
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase; InterPro: IPR011995 Orotidine 5'-phosphate decarboxylase (OMPdecase) , catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=99.80 E-value=7.4e-19 Score=142.42 Aligned_cols=213 Identities=25% Similarity=0.290 Sum_probs=158.0
Q ss_pred CCCCCEEEEEECC----------CHH-------------HHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHH------
Q ss_conf 5789889996079----------989-------------99999997388522899868998425589999998------
Q gi|254780453|r 10 DEKKRLVVGLDLP----------TVK-------------EAERIVSILSDTVSFYKIGYHLSFSGGLELARDLI------ 60 (238)
Q Consensus 10 ~kk~~livALD~~----------~~~-------------e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~------ 60 (238)
.++++|||.||-. +.. -+.++++.+.+|+..||+...||..||.++++-|.
T Consensus 11 ~~~s~lCvGLDP~~~~l~~~~~~~~~~~~~~~~A~~~~~Fc~~iiDA~a~~~a~vKPq~AFFE~~G~~G~~~L~evi~~~ 90 (306)
T TIGR02127 11 AKRSPLCVGLDPRLELLPEWVKESEARKKKESVAAGLAAFCKRIIDATAEYAAVVKPQVAFFEAFGSEGFKALEEVIAHA 90 (306)
T ss_pred HCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 54897899656985762254111422222447889999988999986426331440460011112767899999999997
Q ss_pred -HHC--HHHHHHHHHCCHHHHHHHHHHHHCC--------CCCEEEEEECC-C-HHHHHHHHHHCCCCCCEEEEEEECC-C
Q ss_conf -515--4667877640424678987765215--------67508997246-0-4677776530235531046664147-7
Q gi|254780453|r 61 -SDG--KSVFLDMKLFDIGSSVTAAIEHIAN--------MGVAMLTVHAY-P-QTMRSAVSVVRDTGICLLAVTVLTS-M 126 (238)
Q Consensus 61 -k~~--~~If~D~K~~DIpnTv~~~v~~~~~--------~g~d~iTvH~~-~-~~l~~~~~~~~~~~~~il~Vt~LTS-~ 126 (238)
..| .+|++|-|.+||++|+..+.+.+.. |.+|.+||..+ | +.|+--++..+..+..|+.+ +.|| .
T Consensus 91 ~~~GPq~~V~~D~KRGDIg~Ta~aYA~~~lg~~~~~~S~~~~DA~TvsPYlG~dSL~Pfle~~~~~G~giFvL-v~TSN~ 169 (306)
T TIGR02127 91 KSAGPQLLVLADAKRGDIGSTAEAYAKAYLGHLKADDSPLEADALTVSPYLGLDSLRPFLEVARANGAGIFVL-VKTSNP 169 (306)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHCCEEEEE-EEECCC
T ss_conf 4158942688043137677799999999833678898841010245130001033115689897538969999-851685
Q ss_pred CHHHHHHHHCCC------------------CHHHHHHHHHHHHHHC--------CCCCCC---CCCHHHHHHHHH-----
Q ss_conf 768876520121------------------0488765445421102--------443111---341034455442-----
Q gi|254780453|r 127 DDFDLRESGYEK------------------DISDMVRMRAVQARDI--------GMGGIV---CSPQEVRMVREI----- 172 (238)
Q Consensus 127 ~~~~l~~~g~~~------------------~~~~~v~~~a~~a~~~--------g~~GvV---~s~~ei~~ir~~----- 172 (238)
+..++|+..... ++.+.|-+++....+. +-.|+| ++|.|+..+|..
T Consensus 170 ~~~~~Q~~~~~~~qGtfGessGsilsCsgr~vy~~va~~~~~~~~~~~d~~gPY~~~G~VVGAT~P~~l~~lr~~~nlse 249 (306)
T TIGR02127 170 GGADLQDLRVSDRQGTFGESSGSILSCSGRTVYEEVAELAGELNESPGDKSGPYGSVGAVVGATSPEDLKRLREERNLSE 249 (306)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 53788855540256643345563575077468999999999986315887778521146861388689999877643466
Q ss_pred HCCCCEEEEECCCCCC-CCCCCCCEECCHHHHH-HCCCCEEE-ECCHHCCCCCH-HHHHHH
Q ss_conf 0244035510113578-6579840036989999-65998999-98533088888-999999
Q gi|254780453|r 173 VGHNMVIVTPGIRMLG-SATDGQKRFATPETAL-KYGASHIV-VSRPIVRAADP-VSAAQE 229 (238)
Q Consensus 173 ~~~~~~~itPGI~~~~-~~~~dq~r~~tp~~Ai-~~GaD~iV-VGR~I~~a~dP-~~aa~~ 229 (238)
+-+..++++||+|+|| +..+| -+.++ ..|+..|| +-|+|..|.++ ..++++
T Consensus 250 f~p~~~~LvPG~GAQGG~~~~d------l~~~~~~~g~g~l~n~SR~v~~A~~~r~~~~~~ 304 (306)
T TIGR02127 250 FMPTLPFLVPGFGAQGGAEAAD------LEALFDADGSGLLINSSRGVLFAGPRRSSALVA 304 (306)
T ss_pred HHCCCCEECCCCCCCCCCHHHH------HHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 6257714217501138714899------987520256651566545676507870699984
No 18
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.15 E-value=2.6e-10 Score=87.10 Aligned_cols=203 Identities=20% Similarity=0.273 Sum_probs=120.5
Q ss_pred EEEEECCCHHHHHHHHHH-HCCCCCEEEEC-----HHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 999607998999999997-38852289986-----899842558999999851546678776404246789877652156
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSI-LSDTVSFYKIG-----YHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~-l~~~i~~iKig-----~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
+++.|+.++++-++-+++ -...++++-+- +.--.++|++.++.+++.-..+++|.-|+=- .-...+..+.+.
T Consensus 8 il~aD~~~L~~ei~~~~~~~~~g~d~lHiDImDG~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~--~P~~~i~~~~~~ 85 (224)
T PTZ00170 8 ILAADFTKLLDESQDVLSPEGGGADWLHVDVMDGHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVS--DPERWVDSFAKA 85 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEC--CHHHHHHHHHHC
T ss_conf 766469999999999986340599789994405850776574978999999717998646899863--888879999862
Q ss_pred CCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCC-CHH
Q ss_conf 7508997246-04677776530235531046664147776887652012104887654454211024431--1134-103
Q gi|254780453|r 90 GVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVCS-PQE 165 (238)
Q Consensus 90 g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~s-~~e 165 (238)
|+|++|+|.= ..-.....+..++.+.+. |+.+-.+.+-+.+... ..+. .+....-+..+-|+.| |+-+ -..
T Consensus 86 gad~I~~H~E~~~~~~~~i~~ik~~g~k~-GlAlnP~T~i~~l~~~-l~~~---~iD~VLlMsV~PGf~GQ~Fi~~~l~K 160 (224)
T PTZ00170 86 GASQFTFHIEATEDPKAVARKIRAAGMQV-GVALKPKTPAEELFPL-IDAG---LVDMVLVMTVEPGFGGQSFMHDMMPK 160 (224)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHH-HHHC---CCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 89679985001339999999999714764-5560799987999999-7114---45789998556998762145889999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 44554420244035510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
++.+|+....-.+-+=.||+.+ |.....++|||.+|+|++|.+++||.++.++++++++.
T Consensus 161 I~~lr~~~~~~~I~VDGGIn~~-----------ti~~l~~aGad~~V~GSaiF~~~d~~~~i~~lr~~i~~ 220 (224)
T PTZ00170 161 VRQLRQRYPHLNIQVDGGINPD-----------TIDLAAEAGANVIVAGTSIFKANDRKESIETLRRSVQK 220 (224)
T ss_pred HHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999854899759995899989-----------99999986999999785886799999999999999997
No 19
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.02 E-value=1.2e-09 Score=82.89 Aligned_cols=202 Identities=15% Similarity=0.257 Sum_probs=124.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEEEEC-----HHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 8899960799899999999738852289986-----89984255899999985154667877640424678987765215
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSDTVSFYKIG-----YHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~~i~~iKig-----~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~ 88 (238)
+=+++.|+.++++.++-+++. .++++-+- +.--..+|+..++.+++....+.+|.-++ + +.-...+..+.+
T Consensus 8 pSil~ad~~~L~~ei~~l~~~--g~d~iHiDImDG~FVpN~t~g~~~i~~ir~~~~~~plDvHLM-v-~~P~~~i~~~~~ 83 (223)
T PRK08745 8 PSILSADFARLGEEVDNVLKA--GADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM-V-EPVDRIVPDFAD 83 (223)
T ss_pred HHHHHCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-E-CCHHHHHHHHHH
T ss_conf 866515999999999999976--999899827679707755709599999996189975377898-3-398999999997
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCC-CCH
Q ss_conf 67508997246-04677776530235531046664147776887652012104887654454211024431--113-410
Q gi|254780453|r 89 MGVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVC-SPQ 164 (238)
Q Consensus 89 ~g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~-s~~ 164 (238)
.|+|++|+|.- ..-+.+..+..++.+.+. |+.+--+..-+.+... -+.+....-+..+-|+.| |+- +-.
T Consensus 84 aGad~i~~H~Ea~~~~~~~i~~ik~~g~k~-GlalnP~T~~~~l~~~------l~~~D~VliMtV~PGf~GQ~f~~~~l~ 156 (223)
T PRK08745 84 AGATTISFHPEASRHVHRTIQLIKSHGCQA-GLVLNPATPVDILDWV------LPELDLVLVMSVNPGFGGQAFIPSALD 156 (223)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHH------HHHCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 399789996064429999999999839844-6774699987999998------864798999875699887545688999
Q ss_pred HHHHHHHHH---CCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 344554420---244035-5101135786579840036989999659989999853308888899999999986651
Q gi|254780453|r 165 EVRMVREIV---GHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 165 ei~~ir~~~---~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
.++++|+.. +.++.+ +=.||+.+ |.....++|||.+|.|++|.+++||.++.+++++++...
T Consensus 157 KI~~l~~~~~~~~~~~~I~VDGGI~~~-----------ti~~l~~aGad~~V~GSaiF~~~d~~~~i~~lr~~~~~~ 222 (223)
T PRK08745 157 KLRAIRKKIDALGKPIRLEIDGGVKAD-----------NIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAV 222 (223)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999864999459997887989-----------999999869999997417757999999999999999865
No 20
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.01 E-value=1.4e-09 Score=82.47 Aligned_cols=200 Identities=18% Similarity=0.308 Sum_probs=122.1
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEE-----CHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 9996079989999999973885228998-----68998425589999998515466787764042467898776521567
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYKI-----GYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMG 90 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iKi-----g~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g 90 (238)
+++.|+.++++.++-+++ ..++++-+ ++.--..+|++.++.++++...+.+|.-++ + +.-...+..+.+.|
T Consensus 6 il~ad~~~L~~ei~~l~~--~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~~t~~~~DvHLM-v-~~P~~~i~~~~~aG 81 (220)
T PRK08883 6 ILSADFARLGEDVEKVLA--AGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLM-V-KPVDRIIPDFAKAG 81 (220)
T ss_pred HHHCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-E-CCHHHHHHHHHHCC
T ss_conf 643299999999999997--6999899817789858865669899999996589987578998-3-38888899999759
Q ss_pred CEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCC-CCHHH
Q ss_conf 508997246-04677776530235531046664147776887652012104887654454211024431--113-41034
Q gi|254780453|r 91 VAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVC-SPQEV 166 (238)
Q Consensus 91 ~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~-s~~ei 166 (238)
+|++|+|.- ..-..+..+..++.+.+. |+.+--+..-+.+.. +-+.+....-+..+-|+.| |+- +-..+
T Consensus 82 ad~I~~H~Ea~~~~~~~i~~Ik~~g~k~-GlalnP~T~~~~l~~------~l~~~D~VLvMtV~PGf~GQ~f~~~~l~Ki 154 (220)
T PRK08883 82 ASMITFHVEASEHVDRTLQLIKEHGCQA-GVVLNPATPLAHLEY------IMDKVDLILLMSVNPGFGGQSFIPHTLDKL 154 (220)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHHHHH------HHHHCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9889985776549999999999859966-888479998799999------997469799987458988754557799999
Q ss_pred HHHHHHHC---CCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 45544202---44035-5101135786579840036989999659989999853308888899999999986651
Q gi|254780453|r 167 RMVREIVG---HNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 167 ~~ir~~~~---~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
+.+|+... .++.+ +=.||+.+ |..+..++|||.+|.|++|.+++||.++.+++++++..+
T Consensus 155 ~~l~~~~~~~~~~~~I~VDGGI~~~-----------ti~~l~~aGad~~V~GS~iF~~~d~~~~i~~lr~~~~~~ 218 (220)
T PRK08883 155 RAVRKMIDASGRDIRLEIDGGVKVD-----------NIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAKV 218 (220)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999988744998079998987899-----------999999879999996826748999999999999999984
No 21
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.91 E-value=4.4e-09 Score=79.18 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=119.8
Q ss_pred CCCCCCCCCCCCCEE---EEEECCCHHHHHHHHHHHC-C--CCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCH
Q ss_conf 741123115789889---9960799899999999738-8--522899868998425589999998515466787764042
Q gi|254780453|r 2 DAGLIIDVDEKKRLV---VGLDLPTVKEAERIVSILS-D--TVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDI 75 (238)
Q Consensus 2 ~~~~~~~~~kk~~li---vALD~~~~~e~l~l~~~l~-~--~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DI 75 (238)
.+.--++|+|+.+|- ++.|+.++++.++-+++.+ + ++++--=++.--+++|+..+++++.. .+.|--|+=.
T Consensus 2 ~~~~~~~~m~~~kIspSIL~aD~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~l~~~---~~~DvHLMV~ 78 (235)
T PRK08091 2 TREACIALLKSQPLSVGILAGQWLALHRYLQQLEALNQPLLHFDIMDGQFSPQFTVGPWAVGQFPQT---FIKDVHLMVA 78 (235)
T ss_pred CHHHHHHHHHCCCEEHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCC---CCCCEEEEEC
T ss_conf 7689999852375359987518999999999999779999998185887678432289999973749---9972664338
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHCCCCC--------CEEEEEEECCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 467898776521567508997246-0467777653023553--------1046664147776887652012104887654
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAY-PQTMRSAVSVVRDTGI--------CLLAVTVLTSMDDFDLRESGYEKDISDMVRM 146 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~-~~~l~~~~~~~~~~~~--------~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~ 146 (238)
.-...+..+.+.|+|++|+|.= ..-.....+..++.+. ...|+.+--+..-+.+... -+.+..
T Consensus 79 --~P~~~i~~~~~aGad~it~H~Ea~~~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~~~------L~~vD~ 150 (235)
T PRK08091 79 --DQWTVAKACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLIPY------LSDVDV 150 (235)
T ss_pred --CHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHHHH------HHHCCE
T ss_conf --889999999975998999754555588999999998342022222075013897999988999998------705399
Q ss_pred HHHHHHHCCCCC--CCCCC-HHHHHHHHHHCC---CC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 454211024431--11341-034455442024---40-355101135786579840036989999659989999853308
Q gi|254780453|r 147 RAVQARDIGMGG--IVCSP-QEVRMVREIVGH---NM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 147 ~a~~a~~~g~~G--vV~s~-~ei~~ir~~~~~---~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
..-+..+-|+.| ++.+. ..++++|+..++ ++ +-+=.||+.+ |...+.++|||++|+|++|.+
T Consensus 151 VLvMtV~PGfgGQ~fi~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~-----------ti~~~~~aGad~~V~GS~iF~ 219 (235)
T PRK08091 151 IQLLTLDPRYGSKMRSSDLHERVAQLLCLLGDKREGKLIVIDGSMTQD-----------QLPSLIAQGIDWVVSGSALFS 219 (235)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHCC
T ss_conf 999876689888867878999999999999964999159984898988-----------899999839999997824337
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 8888999999999866
Q gi|254780453|r 220 AADPVSAAQEFQRAIS 235 (238)
Q Consensus 220 a~dP~~aa~~i~~~i~ 235 (238)
++||.++.+++++..|
T Consensus 220 ~~d~~e~i~~lk~l~~ 235 (235)
T PRK08091 220 DDRLVENLRSWKAMFK 235 (235)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9999999999998529
No 22
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=98.86 E-value=6.7e-09 Score=78.01 Aligned_cols=196 Identities=14% Similarity=0.133 Sum_probs=117.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEEEE-----CHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 889996079989999999973885228998-----689984255899999985154667877640424678987765215
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSDTVSFYKI-----GYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~~i~~iKi-----g~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~ 88 (238)
+=+++.|+.++++-++.+++.+ ++++-+ ++.--.++|+..++.+++.- ++.+|.-++= +.-...+..+.+
T Consensus 5 PSil~ad~~~L~~ei~~l~~~g--~d~lHiDIMDG~FVPNitfg~~~v~~ir~~t-~~p~DvHLMv--~~P~~~i~~~~~ 79 (210)
T PRK08005 5 PSLASADPLRYAEALTALHDAP--LGSLHLDIEDTSFINNITFGMKTIQAVAQYT-RHPLSFHLMV--SSPQRWLPWLAA 79 (210)
T ss_pred HHHHHHCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEEE--CCHHHHHHHHHH
T ss_conf 5565448999999999999779--9989982888982774562989999998618-9980799986--888999999997
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCC-CCH
Q ss_conf 67508997246-04677776530235531046664147776887652012104887654454211024431--113-410
Q gi|254780453|r 89 MGVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVC-SPQ 164 (238)
Q Consensus 89 ~g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~-s~~ 164 (238)
.|+|++|+|.- ..-..+..+..++.+.+. |+.+--+.+-+.+.. +-..+....-+..+-|+.| |+- .-.
T Consensus 80 ~g~d~it~H~Ea~~~~~~~i~~Ik~~g~k~-GlAlnP~T~i~~~~~------~l~~vD~VLvMtV~PGf~GQ~Fi~~~~~ 152 (210)
T PRK08005 80 IRPGWIFIHAESVQNPSEILADIRAIGAKA-GLALNPATPLLPYRY------LALQLDALMIMTSEPDGRGQQFIAAMCE 152 (210)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCEE-EEEECCCCCHHHHHH------HHHCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 299859993567769999999999749807-888379998799873------0400798999877899987211788999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf 34455442024403551011357865798400369899996599899998533088888999999999
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
.++++|+......+.+=.||+.+ |.....++|||.+|+|++|.+++||.++..+++.
T Consensus 153 KI~~~r~~~~~~~I~vDGGIn~~-----------t~~~~~~aGad~~V~GSaiF~~~d~~~~i~~lr~ 209 (210)
T PRK08005 153 KVSQSREHFPAAECWADGGITLR-----------AARLLAAAGAQHLVIGRALFTTANYDVTLSQFTA 209 (210)
T ss_pred HHHHHHHHCCCCCEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHC
T ss_conf 99999962877888997887889-----------9999998699999979065369999999999863
No 23
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.86 E-value=8.1e-09 Score=77.47 Aligned_cols=199 Identities=16% Similarity=0.276 Sum_probs=115.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEEE-----CHHHHHCCCHHHHHHHHHHCHHHHHHHHHC-CHHHHHHHHHHHH
Q ss_conf 9889996079989999999973885228998-----689984255899999985154667877640-4246789877652
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYKI-----GYHLSFSGGLELARDLISDGKSVFLDMKLF-DIGSSVTAAIEHI 86 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iKi-----g~~l~~~~G~~~i~~l~k~~~~If~D~K~~-DIpnTv~~~v~~~ 86 (238)
++=+++.|..++++.++-+++.+ ++++-+ ++.--..+|++.++.+++. ..+++|.-++ +=| ...+..+
T Consensus 7 spSil~ad~~~l~~~i~~l~~~g--~~~lHiDImDG~FVpn~t~g~~~v~~i~~~-t~~~~DvHLMv~~P---~~~i~~~ 80 (220)
T PRK05581 7 APSILSADFARLGEEVKAVEAAG--ADWIHVDVMDGHFVPNLTIGPPVVEAIRKV-TKLPLDVHLMVENP---DRYVPDF 80 (220)
T ss_pred EHHHHCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEEEECH---HHHHHHH
T ss_conf 68774079999999999999769--998999575784477556399999999841-89964789997188---8879999
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC--CC-C
Q ss_conf 1567508997246-046777765302355310466641477768876520121048876544542110244311--13-4
Q gi|254780453|r 87 ANMGVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI--VC-S 162 (238)
Q Consensus 87 ~~~g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv--V~-s 162 (238)
.+.|+|++|+|.= .....+..+..++.+.+. |+.+-.+.+-+.+... -+.+....-+..+-|+.|= .- .
T Consensus 81 ~~~g~d~I~~H~Ea~~~~~~~i~~ik~~g~k~-Glalnp~T~~~~l~~~------l~~iD~VlvMtV~PGf~GQ~f~~~~ 153 (220)
T PRK05581 81 AKAGADIITFHVEASEHIHRLLQLIKEAGIKA-GLVLNPATPLEYLEYV------LPLLDLVLLMSVNPGFGGQKFIPEV 153 (220)
T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHH------HHHHCEEEEEEECCCCCCCCCCHHH
T ss_conf 97399889981675027999999999749970-4676699998999999------8741525899865887876455669
Q ss_pred CHHHHHHHHHH---CCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10344554420---244035-51011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 163 PQEVRMVREIV---GHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 163 ~~ei~~ir~~~---~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
-..++.+|+.. +.++.+ +=.||+.+ |.....++|||.+|+|++|.+++||.++.++++++++
T Consensus 154 l~ki~~l~~~~~~~~~~~~I~VDGGIn~~-----------~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~lk~~~~ 219 (220)
T PRK05581 154 LEKIREVRKLIDERGLDILIEVDGGVNAE-----------NIKECAEAGADVFVAGSAVFGAPDYKEAIDELRAELA 219 (220)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHC
T ss_conf 99999999999845997559997898989-----------9999997799999979488579999999999999853
No 24
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=98.69 E-value=9e-08 Score=70.69 Aligned_cols=191 Identities=19% Similarity=0.333 Sum_probs=120.8
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEE-----ECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 999607998999999997388522899-----868998425589999998515466787764042467898776521567
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYK-----IGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMG 90 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iK-----ig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g 90 (238)
|||.|+.-+.|-.+-+++-|= +++= =|+--=+++|+.+++.+++.+-.+++|==|+ |- .+...+..+.+.|
T Consensus 6 ILsADf~rLgee~~~v~~AGa--D~iH~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~P~DVHLM-v~-~pd~~~~~Fa~aG 81 (216)
T TIGR01163 6 ILSADFARLGEEVKAVEEAGA--DLIHVDVMDGHFVPNLTFGPPVLEALRKYGTKLPIDVHLM-VE-NPDRYIEDFAEAG 81 (216)
T ss_pred HHHCCHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC-CC-CHHHHHHHHHHHC
T ss_conf 555047779999999996699--7899862479717710027789998874079521266303-57-8577788999708
Q ss_pred CEEEEEEC-CCHHHHHHHHHHCCCCCCEEEEEEE---CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CC-CCC
Q ss_conf 50899724-6046777765302355310466641---47776887652012104887654454211024431--11-341
Q gi|254780453|r 91 VAMLTVHA-YPQTMRSAVSVVRDTGICLLAVTVL---TSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IV-CSP 163 (238)
Q Consensus 91 ~d~iTvH~-~~~~l~~~~~~~~~~~~~il~Vt~L---TS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV-~s~ 163 (238)
||++|+|. +..-+.+.++..|+.|.+= || +| ||++- +++ +-+.+.-..-|..+-|+-| |+ -+-
T Consensus 82 A~~I~vH~Ea~~h~~R~l~~Ik~~G~~A-G~-v~NP~TPl~~--~~~------~L~~~D~VLlMSVnPGFgGQkFIP~~~ 151 (216)
T TIGR01163 82 ADIITVHAEATEHIHRLLQLIKELGAKA-GI-VLNPATPLEA--LEY------VLEDVDLVLLMSVNPGFGGQKFIPETL 151 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCE-EE-EECCCCCHHH--HHH------HHHHCCEEEEEEEECCCCCCCCHHHHH
T ss_conf 9989984377626799999999718970-68-8679999878--998------987629899887607998841105789
Q ss_pred HHHHHHHHHHC--C---CCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC--CHHHHHHHHH
Q ss_conf 03445544202--4---4035-510113578657984003698999965998999985330888--8899999999
Q gi|254780453|r 164 QEVRMVREIVG--H---NMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA--DPVSAAQEFQ 231 (238)
Q Consensus 164 ~ei~~ir~~~~--~---~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~--dP~~aa~~i~ 231 (238)
+.++.+|+.++ . +.++ |=.||..+ |..+..++|||.+|.|.+|++++ |++++.+.++
T Consensus 152 ~Kir~~R~~id~~~~~~~~~ieVDGGv~~~-----------ni~~~~~AGAD~~VaGSaiF~~~s~d~~~~i~~lr 216 (216)
T TIGR01163 152 EKIRELRKMIDKLELGLSILIEVDGGVNED-----------NIAEVAEAGADILVAGSAIFGADSLDYKEAIRSLR 216 (216)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHH-----------HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCC
T ss_conf 999999999986027995589971798976-----------79999975898999831020888668799997339
No 25
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.67 E-value=7.4e-08 Score=71.26 Aligned_cols=192 Identities=20% Similarity=0.316 Sum_probs=110.6
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEE-----CHHHHHCCCHHHHHHHHHHCHHHHHHHHHC-CHHHHHHHHHHHHCCC
Q ss_conf 9996079989999999973885228998-----689984255899999985154667877640-4246789877652156
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYKI-----GYHLSFSGGLELARDLISDGKSVFLDMKLF-DIGSSVTAAIEHIANM 89 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iKi-----g~~l~~~~G~~~i~~l~k~~~~If~D~K~~-DIpnTv~~~v~~~~~~ 89 (238)
+++.|..++++-++-+++.+ ++++-+ ++---..+|++.++++++.. .+..|.-++ +=| ...+..+.+.
T Consensus 6 il~ad~~~l~~~i~~~~~~g--~d~lHiDimDG~Fvpn~t~g~~~v~~i~~~t-~~~~DvHLMv~~P---~~~i~~~~~~ 79 (211)
T cd00429 6 ILSADFANLGEELKRLEEAG--ADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVENP---ERYIEAFAKA 79 (211)
T ss_pred HHHCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEEEEECCH---HHHHHHHHHH
T ss_conf 53179999999999999769--9989995757972786675989999998757-9970589987188---7769999970
Q ss_pred CCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCCC-HH
Q ss_conf 7508997246-04677776530235531046664147776887652012104887654454211024431--11341-03
Q gi|254780453|r 90 GVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVCSP-QE 165 (238)
Q Consensus 90 g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~s~-~e 165 (238)
|+|++|+|.= .....+..+..++.+.+. |+.+--+..-+.+... -+.+....-++.+-|..| +.-+. ..
T Consensus 80 g~d~I~~H~E~~~~~~~~i~~ik~~g~~~-Glal~p~T~~~~l~~~------l~~~D~vliMtV~PGf~GQ~f~~~~~~k 152 (211)
T cd00429 80 GADIITFHAEATDHLHRTIQLIKELGMKA-GVALNPGTPVEVLEPY------LDEVDLVLVMSVNPGFGGQKFIPEVLEK 152 (211)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHCCCCC-EEEECCCCCHHHHHHH------HHHHCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 99889986432208999999999739872-3575489998999999------9751522798746887887545679999
Q ss_pred HHHHHHHHC---CCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHH
Q ss_conf 445544202---44035-5101135786579840036989999659989999853308888899999999
Q gi|254780453|r 166 VRMVREIVG---HNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQ 231 (238)
Q Consensus 166 i~~ir~~~~---~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~ 231 (238)
++.+|+... .++.+ +=.||+.+ |..+..++|||.+|+|++|.+++||.++.++++
T Consensus 153 i~~l~~~~~~~~~~~~I~vDGGI~~~-----------~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~l~ 211 (211)
T cd00429 153 IRKLRELIPENNLNLLIEVDGGINLE-----------TIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHC
T ss_conf 99999999864998599996785989-----------999999859999997937758999999999719
No 26
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.60 E-value=1.5e-07 Score=69.22 Aligned_cols=198 Identities=15% Similarity=0.171 Sum_probs=115.5
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCCEEEEC-----HHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 899960799899999999738852289986-----899842558999999851546678776404246789877652156
Q gi|254780453|r 15 LVVGLDLPTVKEAERIVSILSDTVSFYKIG-----YHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 15 livALD~~~~~e~l~l~~~l~~~i~~iKig-----~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
=+++.|+.++++.++.++ .+++++-+- +.--+.+|+..++.+++.- .+++|.-++= +.-...+..+.+.
T Consensus 6 Sil~aD~~~L~~~i~~~~---~~~d~iHiDIMDG~FVPN~tfgp~~v~~ir~~t-~~p~DvHLMv--~~P~~~i~~~~~~ 79 (227)
T PRK09722 6 SLMCMDLLKFKEQIEFLD---SKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLA-SKPLDCHLMV--TRPQDYIAQLADA 79 (227)
T ss_pred HHHHCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEEE--CCHHHHHHHHHHC
T ss_conf 676308999999999997---489889995616860785451865999997448-9964789996--5888889999854
Q ss_pred CCEEEEEECC--CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCC-CH
Q ss_conf 7508997246--04677776530235531046664147776887652012104887654454211024431--1134-10
Q gi|254780453|r 90 GVAMLTVHAY--PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVCS-PQ 164 (238)
Q Consensus 90 g~d~iTvH~~--~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~s-~~ 164 (238)
|+|++|+|.- ..-..+..+..++.+.+. |+.+-.+..-+.+... -+.+....-+..+-|+.| |+-+ -.
T Consensus 80 gad~It~H~Ea~~~~~~~~i~~Ik~~g~k~-GlAlnP~Tpi~~i~~~------l~~vD~VLvMsV~PGf~GQ~Fi~~~l~ 152 (227)
T PRK09722 80 GADFITLHPETINGQAFRLIDEIRRAGMKV-GLVLNPETPVEAIKYY------IHLADKVTVMTVDPGFAGQPFIPEMLD 152 (227)
T ss_pred CCCEEEECHHHCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHH------HHHCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 998999565650565999999999869972-2333899986688766------743798999988899987656688999
Q ss_pred HHHHHHHHHC---CCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC-CHHCC-CCCHHHHHHHHHHHHHH
Q ss_conf 3445544202---44035-51011357865798400369899996599899998-53308-88889999999998665
Q gi|254780453|r 165 EVRMVREIVG---HNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVS-RPIVR-AADPVSAAQEFQRAISL 236 (238)
Q Consensus 165 ei~~ir~~~~---~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG-R~I~~-a~dP~~aa~~i~~~i~~ 236 (238)
.++.+|+... .++.+ +=.||+.+ |....+++|||.+|+| .+|.+ .+++.++.+.++++|+.
T Consensus 153 KI~~lr~~~~~~~~~~~I~VDGGI~~~-----------~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~~~~~ 219 (227)
T PRK09722 153 KIAELKAWREREGLEYEIEVDGSCNQK-----------TYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTAQILA 219 (227)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999825998269998988899-----------9999998699999977489748999999999999999999
No 27
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=4.5e-07 Score=66.19 Aligned_cols=200 Identities=18% Similarity=0.287 Sum_probs=121.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEE---ECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 988999607998999999997388522899---86899842558999999851546678776404246789877652156
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYK---IGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iK---ig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
.+=++|.|+....+-++-+++-+-...-+- =++.--..+|+..++.+++.. +.++|--|+=.+ ....+..+.+.
T Consensus 7 apSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t-~~p~DvHLMV~~--p~~~i~~fa~a 83 (220)
T COG0036 7 APSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKIT-DLPLDVHLMVEN--PDRYIEAFAKA 83 (220)
T ss_pred EEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECCC--HHHHHHHHHHH
T ss_conf 415642777679999999997699879996457876787334899999886368-973589973289--89999999981
Q ss_pred CCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEEEE--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCC-C
Q ss_conf 7508997246-046777765302355310466641--47776887652012104887654454211024431--1134-1
Q gi|254780453|r 90 GVAMLTVHAY-PQTMRSAVSVVRDTGICLLAVTVL--TSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVCS-P 163 (238)
Q Consensus 90 g~d~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~L--TS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~s-~ 163 (238)
|+|++|+|.= ..-+...++..++.+.+. ||+.= |+.+. +. ++-+.+....-+..+-|+-| |+-+ -
T Consensus 84 gad~It~H~E~~~~~~r~i~~Ik~~G~ka-Gv~lnP~Tp~~~--i~------~~l~~vD~VllMsVnPGfgGQ~Fi~~~l 154 (220)
T COG0036 84 GADIITFHAEATEHIHRTIQLIKELGVKA-GLVLNPATPLEA--LE------PVLDDVDLVLLMSVNPGFGGQKFIPEVL 154 (220)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCEE-EEEECCCCCHHH--HH------HHHHHCCEEEEEEECCCCCCCCCCHHHH
T ss_conf 99989997127768999999999759857-799789997789--99------8986578999985779986631479999
Q ss_pred HHHHHHHHHHCC--CCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 034455442024--4035-51011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 164 QEVRMVREIVGH--NMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 164 ~ei~~ir~~~~~--~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
..++.+|+.+++ ++.+ +-.||... |..++..+|||++|.|+++.+++|..+..+.++....
T Consensus 155 ~Ki~~lr~~~~~~~~~~IeVDGGI~~~-----------t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 155 EKIRELRAMIDERLDILIEVDGGINLE-----------TIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999997402477599996896988-----------8999997399999997778678119999999998762
No 28
>KOG3111 consensus
Probab=98.58 E-value=1.3e-06 Score=63.21 Aligned_cols=200 Identities=21% Similarity=0.325 Sum_probs=119.9
Q ss_pred CEEEEEECCCHHHH-HHHHHHHCCCC--CEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 88999607998999-99999738852--289986899842558999999851-546678776404246789877652156
Q gi|254780453|r 14 RLVVGLDLPTVKEA-ERIVSILSDTV--SFYKIGYHLSFSGGLELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 14 ~livALD~~~~~e~-l~l~~~l~~~i--~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
+=|++.|+.++++- .++.+.=.+++ +.---++.--+.+|.-.++.|+++ +.+-|+|--++=.- =...+.-..+.
T Consensus 9 pSIL~~dfanL~~E~~~~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~--Peq~v~~~a~a 86 (224)
T KOG3111 9 PSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVEN--PEQWVDQMAKA 86 (224)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECC--HHHHHHHHHHC
T ss_conf 3665130678999999999749875878601471047743361889999852588852367876469--88876799864
Q ss_pred CCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEE--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCC-C
Q ss_conf 75089972460-46777765302355310466641--47776887652012104887654454211024431--1134-1
Q gi|254780453|r 90 GVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVL--TSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVCS-P 163 (238)
Q Consensus 90 g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~L--TS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~s-~ 163 (238)
|++.+|+|.-. +...+.++..++.+.+. |+.+= |+.+ ++.. ..+++.--.-+..+-|+-| |.-+ -
T Consensus 87 gas~~tfH~E~~q~~~~lv~~ir~~gmk~-G~alkPgT~Ve--~~~~------~~~~~D~vLvMtVePGFGGQkFme~mm 157 (224)
T KOG3111 87 GASLFTFHYEATQKPAELVEKIREKGMKV-GLALKPGTPVE--DLEP------LAEHVDMVLVMTVEPGFGGQKFMEDMM 157 (224)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHCCCEE-EEEECCCCCHH--HHHH------HHHHCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 77569998643257899999999749756-68748999589--9997------641025799998548975045789998
Q ss_pred HHHHHHHHHHCCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 0344554420244035-510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 164 QEVRMVREIVGHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 164 ~ei~~ir~~~~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
..++.+|+.. +++.+ +-.|+++. |...+.++||++||.|.++.+|.||.++.+.++++...
T Consensus 158 ~KV~~lR~ky-p~l~ieVDGGv~p~-----------ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111 158 PKVEWLREKY-PNLDIEVDGGVGPS-----------TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCCC-----------HHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHH
T ss_conf 9999999868-98438854886821-----------37799875888798633345279989999999999866
No 29
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=98.08 E-value=4.8e-06 Score=59.55 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=101.4
Q ss_pred EEEEECCCHHHHHHHHHHHC-CC--CCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
Q ss_conf 99960799899999999738-85--2289986899842558999999851546678776404246789877652156750
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILS-DT--VSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVA 92 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~-~~--i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d 92 (238)
+++.|..++++.++-+++.+ ++ +++.-=++.--+.+|++.++++++. ..+++|.-++= +.-...+..+.+.|+|
T Consensus 6 il~ad~~~l~~~i~~l~~~g~d~iHiDimDG~FVpn~t~g~~~i~~ir~~-t~~~~DvHLMv--~~P~~~i~~~~~~g~d 82 (201)
T pfam00834 6 LLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPL-TELPLDVHLMV--EEPDRIIPDFAEAGAD 82 (201)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEEE--ECHHHHHHHHHHCCCC
T ss_conf 74168999999999999769998998276797277555587799999863-89963899998--3776639999873998
Q ss_pred EEEEECC-CHHHHHHHHHHCCCCCCEEEEEEE--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCC-CCHHH
Q ss_conf 8997246-046777765302355310466641--47776887652012104887654454211024431--113-41034
Q gi|254780453|r 93 MLTVHAY-PQTMRSAVSVVRDTGICLLAVTVL--TSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG--IVC-SPQEV 166 (238)
Q Consensus 93 ~iTvH~~-~~~l~~~~~~~~~~~~~il~Vt~L--TS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G--vV~-s~~ei 166 (238)
++|+|.- .....+..+..++.+.+. |+.+- |+.+ .+... -+.+....-+..+-|..| +.- .-..+
T Consensus 83 ~i~~H~E~~~~~~~~i~~ik~~g~k~-GlAlnP~T~~~--~l~~~------l~~iD~VLvMtV~PGf~GQ~f~~~~l~KI 153 (201)
T pfam00834 83 IISFHAEASDHPHRTIQLIKEAGAKA-GLVLNPATPLD--AIEYL------LDDLDLVLLMSVNPGFGGQSFIPSVLPKI 153 (201)
T ss_pred EEEECHHHHHCHHHHHHHHHHCCCEE-EEEECCCCCCH--HHHHH------HHHCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 89975444137999999998649726-88856998602--88876------74279899988668988764567799999
Q ss_pred HHHHHHHC---CCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 45544202---44035-510113578657984003698999965998999985330888
Q gi|254780453|r 167 RMVREIVG---HNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 167 ~~ir~~~~---~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
+.+|+... .++.+ +=.||+.+ |..+..+.|||++|+|++|.+|+
T Consensus 154 ~~lr~~~~~~~~~~~I~vDGGIn~~-----------ti~~l~~~Gad~~V~GSaiF~sp 201 (201)
T pfam00834 154 RKVRKMIDEGGLDTLIEVDGGVNLD-----------NIPQIAEAGADVLVAGSAVFGAP 201 (201)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECCEECCCC
T ss_conf 9999999826998079998988899-----------99999987999999780024598
No 30
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.04 E-value=0.00013 Score=50.20 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=110.4
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHC--CCHHHHHHHH----HHCH---HHHHH-HHHCCHH-
Q ss_conf 5789889--9960799899999999738852289986899842--5589999998----5154---66787-7640424-
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFS--GGLELARDLI----SDGK---SVFLD-MKLFDIG- 76 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~--~G~~~i~~l~----k~~~---~If~D-~K~~DIp- 76 (238)
..|+-|+ +-+-+++.+..+++++.+.+.++++++|.||-.. .|+-+ +.-. +.+. .++.. +|-.++|
T Consensus 2 ~~r~ali~yitaG~P~~e~s~~~l~~l~~~aDiiElGiPfSDPvADGpvI-q~A~~~Al~~g~~~~~i~~~~r~~~~~pi 80 (247)
T PRK13125 2 ISRPGLGVYLTAGWPNAETFLEAIDGLVGLVDFLELGIPPKNPKYDGPVI-RKAHREVSYWGLDYWSLLEEVRKKVGVPT 80 (247)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHH-HHHHHHHHHCCCCHHHHHHHHCCCCCCCE
T ss_conf 98865888871837998999999999864799999799889876660999-99999998769989999998505689988
Q ss_pred ------HHH----HHHHHHHCCCCCEEEEEECCC----HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC--CCH
Q ss_conf ------678----987765215675089972460----4677776530235531046664147776887652012--104
Q gi|254780453|r 77 ------SSV----TAAIEHIANMGVAMLTVHAYP----QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE--KDI 140 (238)
Q Consensus 77 ------nTv----~~~v~~~~~~g~d~iTvH~~~----~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~--~~~ 140 (238)
|+. .+.++.+.+.|+|.+.|.-.| +-.+...+..++.+...+-...-|+ +++.++.+--. ..+
T Consensus 81 vlM~Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt-~~~ri~~i~~~s~gFv 159 (247)
T PRK13125 81 YIMTYLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKF-PDRLIRRLSKLSPLFI 159 (247)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHCCCEE
T ss_conf 972988999976999999999859975883388875467899999999976984699957998-1999999998689779
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--C-CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH---HHHCCCCEEEEC
Q ss_conf 887654454211024431113--4-1034455442024403551011357865798400369899---996599899998
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVC--S-PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET---ALKYGASHIVVS 214 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~--s-~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~---Ai~~GaD~iVVG 214 (238)
+ + ...|..|.-. + ...++++|+...+-.+. -|-|.. ||++ +.+.|||-+|||
T Consensus 160 Y--~-------~~~gvTG~~~~~~~~~~i~~ik~~~~~~Pv~--vGFGI~-----------t~e~v~~~~~~~aDGvIVG 217 (247)
T PRK13125 160 Y--L-------GLYPATGVELPVYVERNIKRVRELVGDVYLV--AGFAID-----------SPEDAAKALSAGADGVVVG 217 (247)
T ss_pred E--E-------EEECCCCCCCCCCHHHHHHHHHHHCCCCCEE--EECCCC-----------CHHHHHHHHHCCCCEEEEC
T ss_conf 9--9-------9443678877325999999999856999858--832879-----------9999999985589999987
Q ss_pred CHHCC--CCCHHHHHHHHHHHHH
Q ss_conf 53308--8888999999999866
Q gi|254780453|r 215 RPIVR--AADPVSAAQEFQRAIS 235 (238)
Q Consensus 215 R~I~~--a~dP~~aa~~i~~~i~ 235 (238)
.+|.+ .+++.+...++.++|+
T Consensus 218 SaiVk~i~~~~~~~~~~~v~~l~ 240 (247)
T PRK13125 218 TAFIRRLERNGVEEALSLLKEIR 240 (247)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 89999999769899999999999
No 31
>PRK13127 consensus
Probab=97.69 E-value=0.0008 Score=45.13 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=107.8
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH-HHCCHH-------
Q ss_conf 99607998999999997388-52289986899842--5589999998---5154---667---877-640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM-KLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~-K~~DIp------- 76 (238)
+-.-++|.+..+++++.+.. -++++++|.||-.. .|+-+-+--. +.|. .+| ..+ |-.++|
T Consensus 17 itaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlM~Y~ 96 (262)
T PRK13127 17 LVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPLVLMTYY 96 (262)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 62708998999999999997699999978988887765799999999999769979999999999745699887999661
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ ...++.+.+.|+|.+.+.-.| +-.....+.+++.+..++-...-|+ +++.++.+--. ..-+.-.
T Consensus 97 N~i~~~G~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt-~~~Ri~~i~~~------a~gFiY~ 169 (262)
T PRK13127 97 NPVYRYGVEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKHGLDLVFLVAPTT-PEERLKRIDEA------SSGFVYL 169 (262)
T ss_pred HHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHC------CCCEEEE
T ss_conf 3887608999999998759976996699978999999999855832799858999-89999999843------8981899
Q ss_pred HHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH---HHHCCCCEEEECCHHC----
Q ss_conf 11024431113-41----034455442024403551011357865798400369899---9965998999985330----
Q gi|254780453|r 151 ARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET---ALKYGASHIVVSRPIV---- 218 (238)
Q Consensus 151 a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~---Ai~~GaD~iVVGR~I~---- 218 (238)
....|+-|.=. -+ .-++++|+.. +..+. -|-|.. ||++ +.+.|||-+|||.+|.
T Consensus 170 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~v~~~~~~~aDGvIVGSaiv~~i~ 235 (262)
T PRK13127 170 VSRLGVTGAREDVEEATFDLLKRARTTC-KNKIA--VGFGIS-----------KGEHAEELLDAGADGVIVGSALVDIIA 235 (262)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEE--EEEEEC-----------CHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 8435556876555288999999999617-99848--993348-----------899999998649999998789999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 888889999999998665
Q gi|254780453|r 219 RAADPVSAAQEFQRAISL 236 (238)
Q Consensus 219 ~a~dP~~aa~~i~~~i~~ 236 (238)
++.++.+..+++.+-.+.
T Consensus 236 ~~~~~~~~~~~v~~~~~~ 253 (262)
T PRK13127 236 EGGDNEEVADRLEELARE 253 (262)
T ss_pred HCCCHHHHHHHHHHHHHH
T ss_conf 669978999999999999
No 32
>PRK13113 consensus
Probab=97.66 E-value=0.0012 Score=44.02 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=111.4
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHH--CCCHHHHHHHH---HHCH---HHHH---HH-HH-C
Q ss_conf 5789889--99607998999999997388-5228998689984--25589999998---5154---6678---77-64-0
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSF--SGGLELARDLI---SDGK---SVFL---DM-KL-F 73 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~--~~G~~~i~~l~---k~~~---~If~---D~-K~-~ 73 (238)
++|+-|+ +-+-+++.+..+++++.+.. .++++++|.||-. ..|+-+-+.-. +.|. .+|. .+ |- .
T Consensus 14 ~~~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~ 93 (263)
T PRK13113 14 EGKKAFVAYVMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDD 93 (263)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 69954898873828997999999999997699999978988887765899999999999779838899999997512389
Q ss_pred CHH-------HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 424-------678-----987765215675089972460-4677776530235531046664147776887652012104
Q gi|254780453|r 74 DIG-------SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 74 DIp-------nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
++| |.+ .+.++.+.+.|+|.+.+.-.| +-.....+..++.+...+-...-|+ +++.++.+--.
T Consensus 94 ~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt-~~~Ri~~i~~~--- 169 (263)
T PRK13113 94 TTPIVMMGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLPPEEDSELCLPAQAAGLNFIRLATPTT-DDRRLPKVLQN--- 169 (263)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHC---
T ss_conf 98889983136898856999999987779436971799978889999999977986799947999-99999999833---
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEE
Q ss_conf 8876544542110244311134-----1034455442024403551011357865798400369899--99659989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVV 213 (238)
..-+.-.....|+-|.-.+ ...++++|+.. +-. ++.|-|.. ||++ .+..+||-+||
T Consensus 170 ---a~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~P--v~vGFGI~-----------~~e~~~~~~~~ADGvIV 232 (263)
T PRK13113 170 ---TSGFVYYVSITGITGAAAAQAADVAPEVARIKAAT-DLP--VIVGFGIT-----------TPEAAQAIAGVADGCVV 232 (263)
T ss_pred ---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--EEEECCCC-----------CHHHHHHHHCCCCEEEE
T ss_conf ---89848998345566877554377999999998547-998--89983789-----------98999999733999998
Q ss_pred CCHHCC---CCCHHHHHHHHHHHHHH
Q ss_conf 853308---88889999999998665
Q gi|254780453|r 214 SRPIVR---AADPVSAAQEFQRAISL 236 (238)
Q Consensus 214 GR~I~~---a~dP~~aa~~i~~~i~~ 236 (238)
|.++.+ ..+|.+.+.+|.++++.
T Consensus 233 GSa~v~~i~e~~~~~~~~~~v~~l~~ 258 (263)
T PRK13113 233 GSAIVKLIGEGRPVAEVLAFVATLAD 258 (263)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 68999999828998999999999999
No 33
>PRK13135 consensus
Probab=97.64 E-value=0.0029 Score=41.54 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=106.1
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHH--CCCHHHHHHHH---HHCH---HHHH---H-HHHCCHH-------
Q ss_conf 99607998999999997388-5228998689984--25589999998---5154---6678---7-7640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSF--SGGLELARDLI---SDGK---SVFL---D-MKLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~--~~G~~~i~~l~---k~~~---~If~---D-~K~~DIp------- 76 (238)
+-.-+++.+..+++++.+.. .++++++|.||-. ..|+-+-+.-. +.|. .+|. . +|..++|
T Consensus 23 itaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~PivlM~Y~ 102 (267)
T PRK13135 23 ITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPIVLMGYY 102 (267)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 71718998999999999997599999978998986665899999999999769849999999998633589988998423
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ .+.++.+.+.|+|.+.+.-.| +-.....+..++.+..++-...-||. ++.++.+--. ..-+.-.
T Consensus 103 N~i~~yG~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~lvsPtt~-~~Ri~~i~~~------s~GFiY~ 175 (267)
T PRK13135 103 NPIFAYGLERFAADAAAAGVDGVLLVDLPPEEAEEFKACADRHGLDVIFLLTPTSD-ESRIRTVARL------GRGFVYY 175 (267)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHC------CCCEEEE
T ss_conf 09988468999999997499747637899788899999998729618998089895-7999999961------8981899
Q ss_pred HHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCC----
Q ss_conf 110244311134-----10344554420244035510113578657984003698999--9659989999853308----
Q gi|254780453|r 151 ARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVR---- 219 (238)
Q Consensus 151 a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~---- 219 (238)
....|+-|.-.+ ...++++|+.. +-.+ +.|-|.. ||+++ +..+||-+|||.+|.+
T Consensus 176 Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGI~-----------~~e~v~~i~~~ADGvIVGSaiVk~ie~ 241 (267)
T PRK13135 176 VSVTGVTGARSGVEATVGGNVAKIREKI-TVPV--VVGFGIS-----------TPQQAADVAAMADGVVVGSALVKLFEL 241 (267)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEEECCC-----------CHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 8545666776444488999999998606-8984--8981679-----------999999998059999987899999986
Q ss_pred --CCCHHHHHHHHHHHHHH
Q ss_conf --88889999999998665
Q gi|254780453|r 220 --AADPVSAAQEFQRAISL 236 (238)
Q Consensus 220 --a~dP~~aa~~i~~~i~~ 236 (238)
.++..+.+.+|.++|+.
T Consensus 242 ~~~~~~~~~i~~fv~~lk~ 260 (267)
T PRK13135 242 HRGEELRQEVATFVASLRQ 260 (267)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 0818789999999999999
No 34
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=97.63 E-value=0.0063 Score=39.33 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=105.6
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH--HHCCHH------
Q ss_conf 99607998999999997388-52289986899842--5589999998---5154---667---877--640424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM--KLFDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~--K~~DIp------ 76 (238)
+-+-+++.+..+++++.+.. .++++++|.||-.. .|+-+-+--. +.|. .+| ..+ |..++|
T Consensus 15 i~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~pivlM~Y 94 (258)
T pfam00290 15 VTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIVLMTY 94 (258)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 70738998999999999997699999978998887665899999999999869969999999998551289988899852
Q ss_pred -HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -678-----987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r 77 -SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 -nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
|++ .+.++.+.+.|+|.+.+.-.| +-.....+.+++++..++-...-|+ +.+.++.+--. ..-+.-
T Consensus 95 ~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvsPtt-~~~Ri~~i~~~------s~gFiY 167 (258)
T pfam00290 95 YNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFLVAPTT-SDERLKTISEA------ASGFVY 167 (258)
T ss_pred CHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHH------CCCEEE
T ss_conf 08898729999999999759977870799988999999999845843588845888-19999999960------898089
Q ss_pred HHHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC---
Q ss_conf 211024431113-41----034455442024403551011357865798400369899--99659989999853308---
Q gi|254780453|r 150 QARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR--- 219 (238)
Q Consensus 150 ~a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~--- 219 (238)
.....|+-|.-. .+ .-++++|+.. +-.+. -|-|.. ||++ .+..+||-+|||.+|.+
T Consensus 168 ~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGIs-----------~~e~v~~~~~~aDGvIVGSaiv~~i~ 233 (258)
T pfam00290 168 LVSRAGVTGARNAFNAQLDELVERLKKYT-NVPVA--VGFGIS-----------TPEHVKKIAAGADGVIVGSAIVDIIE 233 (258)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEE--EEECCC-----------CHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 98534456765556388999999998606-99848--994579-----------99999999815999998499999999
Q ss_pred --CCCHHHHHHHHHHHHHH
Q ss_conf --88889999999998665
Q gi|254780453|r 220 --AADPVSAAQEFQRAISL 236 (238)
Q Consensus 220 --a~dP~~aa~~i~~~i~~ 236 (238)
.+|+....+++.+-++.
T Consensus 234 ~~~~~~~~~~~~v~~fv~~ 252 (258)
T pfam00290 234 ENLDDPEQMLAKLEEFVGK 252 (258)
T ss_pred HCCCCHHHHHHHHHHHHHH
T ss_conf 7040688999999999999
No 35
>PRK13124 consensus
Probab=97.63 E-value=0.0019 Score=42.77 Aligned_cols=198 Identities=18% Similarity=0.240 Sum_probs=104.8
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH-HHCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---5154---667---877-640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM-KLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~-K~~DIp------- 76 (238)
+-.=+++.+..+++++.+... ++++++|.||-.. .|+-+-+.-. +.|. .+| .++ +-.|+|
T Consensus 15 itaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~pivlM~Y~ 94 (257)
T PRK13124 15 ITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKVTIPIVYFTYY 94 (257)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 63708998999999999997699999978988887765799999999999769968999999998524478888997500
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ ...++.+.+.|+|.+.+.-.| +--....+.+++.+..++-...-|| ++.++.+.-. ..-+.-.
T Consensus 95 N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPTs--~~Ri~~i~~~------s~gFiY~ 166 (257)
T PRK13124 95 NPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLVAPTS--KERIKKIAEQ------AEGFVYC 166 (257)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHC------CCCCEEE
T ss_conf 7898757999999999759984777899979999999999866873578847996--7999999854------8983899
Q ss_pred HHHCCCCCCCCC-C----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHC----C
Q ss_conf 110244311134-1----034455442024403551011357865798400369899--9965998999985330----8
Q gi|254780453|r 151 ARDIGMGGIVCS-P----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIV----R 219 (238)
Q Consensus 151 a~~~g~~GvV~s-~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~----~ 219 (238)
....|+.|.-.. + .-++++|+.. +-. ++-|-|.. ||++ .+..+||-+|||.+|. +
T Consensus 167 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~P--v~vGFGI~-----------~~e~v~~~~~~ADGvIVGSaivk~i~~ 232 (257)
T PRK13124 167 VSSLGVTGVREEIETDLEEFIRTVKQYS-NVP--VAVGFGIS-----------TPEQVQKMKEIADGVVVGSALVEKIEE 232 (257)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--EEEEECCC-----------CHHHHHHHHHHCCEEEECHHHHHHHHH
T ss_conf 6246667876556088999999998617-998--38984469-----------999999998019999982899999985
Q ss_pred CCCHH---HHHHHHHHHHHH
Q ss_conf 88889---999999998665
Q gi|254780453|r 220 AADPV---SAAQEFQRAISL 236 (238)
Q Consensus 220 a~dP~---~aa~~i~~~i~~ 236 (238)
+.++. +...+|.++|++
T Consensus 233 ~~~~~~~~~~v~~fv~~lk~ 252 (257)
T PRK13124 233 PEEREEALAEVEEFASSLRE 252 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 68757899999999999999
No 36
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.61 E-value=0.00033 Score=47.60 Aligned_cols=170 Identities=13% Similarity=0.163 Sum_probs=93.1
Q ss_pred EEEEECCCH-HHHHHHHHHHCCC-CCEEEECHHHHHCCCH-----HHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 999607998-9999999973885-2289986899842558-----999999851-5466787764042467898776521
Q gi|254780453|r 16 VVGLDLPTV-KEAERIVSILSDT-VSFYKIGYHLSFSGGL-----ELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 16 ivALD~~~~-~e~l~l~~~l~~~-i~~iKig~~l~~~~G~-----~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
+++++.... +...++++.+... .+++.++......... +.+++.++. +.|+++.+.+.+.-+......+.+.
T Consensus 2 ~~~~~~~~~~~~~~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~~~~~~~~~~~~~~~~~~ 81 (200)
T cd04722 2 ILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 57763289987899999999868873688648879824616999999999997079987998420566667759999999
Q ss_pred CCCCEEEEEECCCHH----HHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 567508997246046----77776530235--531046664147776887652012104887654454211024431113
Q gi|254780453|r 88 NMGVAMLTVHAYPQT----MRSAVSVVRDT--GICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC 161 (238)
Q Consensus 88 ~~g~d~iTvH~~~~~----l~~~~~~~~~~--~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~ 161 (238)
..|+|.+.+|..+.. ..+..+..++. +..++ ..++..+...- ..+.+.|++.+.+
T Consensus 82 ~~g~d~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~vi--~~~~~~~~~~~-----------------~~a~~~g~~~v~~ 142 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVV--VKLSPTGELAA-----------------AAAEEAGVDEVGL 142 (200)
T ss_pred HCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--EECCCCCHHHH-----------------HHHHHCCCCEEEE
T ss_conf 8399989978999654300689999999844896499--96899999999-----------------9999809979997
Q ss_pred CC---------------HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf 41---------------0344554420244035510113578657984003698999965998999985
Q gi|254780453|r 162 SP---------------QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 162 s~---------------~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
.. ..+..++... +-.++...||+... ...+|+..|||-++||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ipvi~~gGi~~~~----------~~~~~~~~gAdgv~vGs 200 (200)
T cd04722 143 GNGGGGGGGRDAVPIADLLLILAKRGS-KVPVIAGGGINDPE----------DAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHCCCCEEEECC
T ss_conf 087467888766611689999999857-99989975879999----------99999985998898188
No 37
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.61 E-value=0.0045 Score=40.30 Aligned_cols=199 Identities=16% Similarity=0.218 Sum_probs=104.9
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHC--H-HHHHHHH----HCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---515--4-6678776----40424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDG--K-SVFLDMK----LFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~--~-~If~D~K----~~DIp------- 76 (238)
+-.-+++.+..+++++.+... ++++++|.||-.. .|+-+-+--. +.| . .+|.-.| -.++|
T Consensus 21 ~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~PivlMtY~ 100 (263)
T CHL00200 21 ITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYY 100 (263)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf 70738987899999999997699999978988886665899999999999779877789999999860679988998620
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ .+.++.+.+.|+|.+.+.-.| +-.....+.+++++..++-...-|+ +++.++.+--. ..-+.-.
T Consensus 101 N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~~~------a~GFiY~ 173 (263)
T CHL00200 101 NPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARA------APGCIYL 173 (263)
T ss_pred HHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHH------CCCCEEE
T ss_conf 6888738899999999849986874799978889999999855862166647899-69999999972------8980898
Q ss_pred HHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEECCHHCC---
Q ss_conf 110244311134-----10344554420244035510113578657984003698999---9659989999853308---
Q gi|254780453|r 151 ARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGASHIVVSRPIVR--- 219 (238)
Q Consensus 151 a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVVGR~I~~--- 219 (238)
....|+.|.=.+ +.-++++|+.. +..+ +.|-|.. ||+++ .+.|||-+|||.+|.+
T Consensus 174 vs~~GvTG~~~~~~~~l~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~~aDGvIVGSaiV~~i~ 239 (263)
T CHL00200 174 VSTTGVTGLKTELDKKLKKLIETIKKMT-NKPI--ILGFGIS-----------TSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEECCCC-----------CHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 5336556875445187999999999736-9984--8735879-----------999999997459999998789999998
Q ss_pred CCCHHH---HHHHHHHHHHH
Q ss_conf 888899---99999998665
Q gi|254780453|r 220 AADPVS---AAQEFQRAISL 236 (238)
Q Consensus 220 a~dP~~---aa~~i~~~i~~ 236 (238)
..+|.+ .+++|.++++.
T Consensus 240 ~~~~~~~~~~i~~f~~~lk~ 259 (263)
T CHL00200 240 GSSPEKGLDQLSEFCKVAKK 259 (263)
T ss_pred HCCHHHHHHHHHHHHHHHHH
T ss_conf 55907689999999999999
No 38
>PRK13117 consensus
Probab=97.60 E-value=0.0076 Score=38.80 Aligned_cols=198 Identities=21% Similarity=0.270 Sum_probs=106.8
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH--HHCCHH------
Q ss_conf 996079989999999973-8852289986899842--5589999998---5154---667---877--640424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM--KLFDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~--K~~DIp------ 76 (238)
+-.-+++.+..+++++.+ ...++++++|.||-.. .|+-+-+--. +.|. .+| ..+ |..++|
T Consensus 23 itaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlM~Y 102 (268)
T PRK13117 23 VTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPTIPIGLLLY 102 (268)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 72708997999999999996699989978998885655799999999998459969999999988500478987799732
Q ss_pred -HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -678-----987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r 77 -SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 -nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
|++ .+.++.+.+.|+|.+.+.-.| +--....+.+++.+...+-...-| .+++.++++.- ...-+.-
T Consensus 103 ~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lv~Pt-t~~~Ri~~i~~------~a~GFiY 175 (268)
T PRK13117 103 ANLVFANGIDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKHGIAPIFICPPN-ADDDTLRQIAS------LGRGYTY 175 (268)
T ss_pred CCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHH------HCCCEEE
T ss_conf 6289871799999999976987798579997885899999986798379984799-99999999997------4798599
Q ss_pred HHHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEECCHHCC--
Q ss_conf 211024431113-41----03445544202440355101135786579840036989---999659989999853308--
Q gi|254780453|r 150 QARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPE---TALKYGASHIVVSRPIVR-- 219 (238)
Q Consensus 150 ~a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVVGR~I~~-- 219 (238)
.....|+-|.=. .+ .-++++|+.. .-.+ +-|-|.. ||+ ++++.+||-+|||.+|.+
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~~aDGvIVGSaiV~~i 241 (268)
T PRK13117 176 LLSRAGVTGAENKAAAPLNHLVEKLKEYN-APPP--LQGFGIS-----------EPEQVKAAIKAGAAGAISGSAIVKII 241 (268)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCCE--EEEECCC-----------CHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 98367778898666277999999999647-9986--9983789-----------99999999863899899878999999
Q ss_pred ---CCCHHH---HHHHHHHHHH
Q ss_conf ---888899---9999999866
Q gi|254780453|r 220 ---AADPVS---AAQEFQRAIS 235 (238)
Q Consensus 220 ---a~dP~~---aa~~i~~~i~ 235 (238)
..||.+ ...+|.++++
T Consensus 242 ~~~~~~~~~~~~~v~~~v~~Lk 263 (268)
T PRK13117 242 EKNLDNPEKMLAELAEFVRAMK 263 (268)
T ss_pred HHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8716688999999999999999
No 39
>PRK13139 consensus
Probab=97.57 E-value=0.00095 Score=44.65 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=110.5
Q ss_pred CCCCCEE---EEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHHH---HH-HHC
Q ss_conf 5789889---9960799899999999738-852289986899842--5589999998---5154---6678---77-640
Q gi|254780453|r 10 DEKKRLV---VGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVFL---DM-KLF 73 (238)
Q Consensus 10 ~kk~~li---vALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If~---D~-K~~ 73 (238)
+++.+.. +-+-++|.+..+++++.+. ..++++++|.||-.. .|+-+-+.-. +.|. .+|. .+ +-.
T Consensus 12 ~~~~~~li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~ 91 (254)
T PRK13139 12 QQKDILLMTHIVLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAF 91 (254)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 76992488785584899799999999999669999997898888666589999999999976997999999999997248
Q ss_pred CHH-------HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 424-------678-----987765215675089972460-4677776530235531046664147776887652012104
Q gi|254780453|r 74 DIG-------SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 74 DIp-------nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
++| |++ .+.++.+.+.|+|.+.+.-.| +--+...+.+++.+..++-...-|+. ++.++.+--
T Consensus 92 ~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~-~~Ri~~i~~---- 166 (254)
T PRK13139 92 NIPFLFMTYYNILFKYGVERFIDEVADIGVKGLIVPDLPPEQAQDYIAQCRAKGMAPIGIYAPTST-DERMGKIAA---- 166 (254)
T ss_pred CCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHH----
T ss_conf 976899952599987099999999997599858647999788999999998469757999458999-899999985----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEE
Q ss_conf 8876544542110244311134-----1034455442024403551011357865798400369899--99659989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVV 213 (238)
...-+.-.....|+-|.=.+ ...++++|+.. +-.+. -|-|.. ||++ .++.+||-+||
T Consensus 167 --~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~v~~~~~~aDGvIV 230 (254)
T PRK13139 167 --AADGFIYCVARRGVTGSKTSFDEHVGAFLHRCRAAT-PLPLA--VGFGVK-----------SAADVDYLKGKADIAVV 230 (254)
T ss_pred --CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEE--EECCCC-----------CHHHHHHHHCCCCEEEE
T ss_conf --169869999666667988664588999999998558-99879--973779-----------99999999716999998
Q ss_pred CCHHCCC--CCHHHHHHHHHHHHH
Q ss_conf 8533088--888999999999866
Q gi|254780453|r 214 SRPIVRA--ADPVSAAQEFQRAIS 235 (238)
Q Consensus 214 GR~I~~a--~dP~~aa~~i~~~i~ 235 (238)
|.+|.+. ++..+++..|.++++
T Consensus 231 GSaiVk~ie~~g~~~v~~f~~~lr 254 (254)
T PRK13139 231 GSQAIRLFDEAGAAAVEPFFRSLR 254 (254)
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 889999999759999999999709
No 40
>PRK13129 consensus
Probab=97.55 E-value=0.001 Score=44.51 Aligned_cols=201 Identities=19% Similarity=0.276 Sum_probs=104.2
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH-HHCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---5154---667---877-640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM-KLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~-K~~DIp------- 76 (238)
+-.-+++.+..+++++.+... ++++++|.||-.. .|+-+-+--. +.|. .+| -.+ +-.++|
T Consensus 25 itaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~PivlM~Y~ 104 (267)
T PRK13129 25 LMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPIILFTYY 104 (267)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 70718998999999999997799999979988887765899999999999769878999999998543478888998610
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|.+ .+.++.+.+.|+|.+.+.-.| +-.....+.+++++..++-...-|+ +++.++.+.-.. .-+.-.
T Consensus 105 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~~~~------~gFiY~ 177 (267)
T PRK13129 105 NPLLNRGMERFCEQAAAAGVAGLVVPDLPLEEAEKLSPIAAERGIDLILLVAPTT-PAERMKRIAQQS------RGFTYL 177 (267)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHCC------CCEEEE
T ss_conf 7898855999999998669875767899989999999999853981689948999-689999998168------980898
Q ss_pred HHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC---CCC
Q ss_conf 110244311134-----103445544202440355101135786579840036989999659989999853308---888
Q gi|254780453|r 151 ARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR---AAD 222 (238)
Q Consensus 151 a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~---a~d 222 (238)
....|+-|.-.+ ..-++++|+.. +..+. -|-|....+ | .+++.+.|||-+|||.+|.+ ..+
T Consensus 178 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGIs~~e---~-----v~~~~~~~ADGvIVGSaiV~~i~e~~ 246 (267)
T PRK13129 178 VSVTGVTGERSQMENRVESLLQQLRQVT-SKPIA--VGFGISGPE---Q-----ARQVREWGADGAIVGSAFVKRLAEAS 246 (267)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEE--EEECCCCHH---H-----HHHHHHCCCCEEEECHHHHHHHHHCC
T ss_conf 7346656765445088999999999834-89817--884479999---9-----99998549999998789999998659
Q ss_pred HH---HHHHHHHHHHH
Q ss_conf 89---99999999866
Q gi|254780453|r 223 PV---SAAQEFQRAIS 235 (238)
Q Consensus 223 P~---~aa~~i~~~i~ 235 (238)
|. +.+.+|.++|+
T Consensus 247 ~~~~~~~v~~fvk~lk 262 (267)
T PRK13129 247 PGEGLQEAGEFCRELR 262 (267)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 1757999999999999
No 41
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.54 E-value=0.0028 Score=41.67 Aligned_cols=198 Identities=20% Similarity=0.292 Sum_probs=105.3
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHC------HHHHHHHH-HCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---515------46678776-40424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDG------KSVFLDMK-LFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~------~~If~D~K-~~DIp------- 76 (238)
+-+-+++.+..+++++.+... ++++++|.||-.. .|+-+-+--. +.| +.+...++ -.++|
T Consensus 15 ~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pivlM~Y~ 94 (256)
T PRK13111 15 ITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIVLMTYY 94 (256)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 70708998999999999996599999978887887665799999999999779969999999999860689988998503
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ .+.++.+.+.|+|.+.+.-.| +--....+.+++++..++-...-|+ +++.++++-- ...-+.-.
T Consensus 95 N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt-~~~Ri~~i~~------~s~gfiY~ 167 (256)
T PRK13111 95 NPIFQYGVEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFLVAPTT-TDERLKKIAS------HASGFVYY 167 (256)
T ss_pred CHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHH------HCCCEEEE
T ss_conf 0898709999999999759977981699978889999999975980899969999-8899999996------26985999
Q ss_pred HHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC---C
Q ss_conf 11024431113-41----034455442024403551011357865798400369899--99659989999853308---8
Q gi|254780453|r 151 ARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR---A 220 (238)
Q Consensus 151 a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~---a 220 (238)
....|+-|.-. -+ .-++++|+.. +..+. -|-|.. ||++ .+..|||-+|||.+|.+ .
T Consensus 168 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~--vGFGIs-----------~~e~v~~~~~~aDGvIVGSaiv~~i~~ 233 (256)
T PRK13111 168 VSRAGVTGARSADAADVADLLARLKAHT-DLPVA--VGFGIS-----------TPEQAAAIAEGADGVIVGSALVKIIEA 233 (256)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEE--EECCCC-----------CHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 8567767887666288999999998706-89758--852889-----------999999997459999986899999984
Q ss_pred CCHHHHH---HHHHHHHH
Q ss_conf 8889999---99999866
Q gi|254780453|r 221 ADPVSAA---QEFQRAIS 235 (238)
Q Consensus 221 ~dP~~aa---~~i~~~i~ 235 (238)
.|+.++. .+|.++|+
T Consensus 234 ~~~~~~~~~v~~f~~~lk 251 (256)
T PRK13111 234 ADPEEALAALAEFVKELK 251 (256)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 397778999999999999
No 42
>PRK13118 consensus
Probab=97.53 E-value=0.0059 Score=39.51 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=107.1
Q ss_pred CCCCEE--EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHHH--HCC
Q ss_conf 789889--996079989999999973-8852289986899842--5589999998---5154---667---8776--404
Q gi|254780453|r 11 EKKRLV--VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDMK--LFD 74 (238)
Q Consensus 11 kk~~li--vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~K--~~D 74 (238)
+|+-|+ +-.-+++.+..+++++.+ ..-++++++|.||-.. .|+-+-+.-. +.|. .+| .+++ ..+
T Consensus 15 ~~~ali~yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~ 94 (269)
T PRK13118 15 NRKALVPFVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQGDQT 94 (269)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99559988717189989999999999976999999789888866657999999999996798688999999998643899
Q ss_pred HH-------HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHH
Q ss_conf 24-------678-----987765215675089972460-46777765302355310466641477768876520121048
Q gi|254780453|r 75 IG-------SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDIS 141 (238)
Q Consensus 75 Ip-------nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~ 141 (238)
+| |++ ...++.+.+.|+|.+.+.-.| +-.....+.+++.+..++-...-|+ +++.++.+.-.
T Consensus 95 ~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~~~---- 169 (269)
T PRK13118 95 TPVVLMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAHGLDFIRLTSPTT-SDERLPRVLEH---- 169 (269)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHEEECCCC-CHHHHHHHHHC----
T ss_conf 9989974000787863999999999859974645899978999999999975984640369898-78999999843----
Q ss_pred HHHHHHHHHHHHCCCCCCCC--C---CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEEC
Q ss_conf 87654454211024431113--4---10344554420244035510113578657984003698999--96599899998
Q gi|254780453|r 142 DMVRMRAVQARDIGMGGIVC--S---PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVS 214 (238)
Q Consensus 142 ~~v~~~a~~a~~~g~~GvV~--s---~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVG 214 (238)
..-+.-.....|+-|.-. + ...++.+|+.. .-.+ +-|-|.. ||+++ +..+||-+|||
T Consensus 170 --a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~~~~v~~~aDGvIVG 233 (269)
T PRK13118 170 --ASGYLYYVSLAGVTGAAALDTEHVEEAVARLRRHT-DLPV--VVGFGIR-----------DAESAAAIARLADGVVVG 233 (269)
T ss_pred --CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEEECCC-----------CHHHHHHHHCCCCEEEEC
T ss_conf --78838998545667877667198999999999625-8981--7871679-----------999999998009999985
Q ss_pred CHHC----CCCCHHHHHHHHHHHHHH
Q ss_conf 5330----888889999999998665
Q gi|254780453|r 215 RPIV----RAADPVSAAQEFQRAISL 236 (238)
Q Consensus 215 R~I~----~a~dP~~aa~~i~~~i~~ 236 (238)
.++. ++.+|.+..+++.+-++.
T Consensus 234 Sa~Vk~i~~~~~~~~~~~~~~~~~k~ 259 (269)
T PRK13118 234 SALVDAIAEAKDVDQAVERVLALLAE 259 (269)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 89999998567826799999999999
No 43
>PRK13114 consensus
Probab=97.51 E-value=0.01 Score=38.06 Aligned_cols=198 Identities=17% Similarity=0.197 Sum_probs=107.8
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHH----HHHHHCH---HHH---HHH-HH-CCHH-----
Q ss_conf 996079989999999973-8852289986899842--5589999----9985154---667---877-64-0424-----
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELAR----DLISDGK---SVF---LDM-KL-FDIG----- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~----~l~k~~~---~If---~D~-K~-~DIp----- 76 (238)
+-.-+++.+..+++++.+ ...++++++|.||-.. .|+-+-+ .|+ .|. .+| ..+ |. -|+|
T Consensus 19 itaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~-~G~~l~~~f~~v~~~r~~~~~~PivlM~ 97 (266)
T PRK13114 19 ITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLA-AGTTTADIFRIAAEFRQRHPEVPLVLMG 97 (266)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 707189989999999999976999999799988867768999999999998-6997999999999987418998879986
Q ss_pred --HHHH-----HHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf --6789-----87765215675089972460-467777653023553104666414777688765201210488765445
Q gi|254780453|r 77 --SSVT-----AAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 77 --nTv~-----~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
|.+. ..++.+.+.|+|.+.+.-.| +--....+..++.+..++-...-|+ +++.++.+.- ...-+.
T Consensus 98 Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~gi~~I~liaPtt-~~~Ri~~i~~------~a~gFi 170 (266)
T PRK13114 98 YANPMVRRGPDWFAAECKKAGVDGVICVDIPPEEDAELGPALRAAGIDPIRLATPTT-DAARLPAVLE------GASGFL 170 (266)
T ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHH------HCCCCE
T ss_conf 301999864999999999749977984589978889999999974997267756999-7999999997------389958
Q ss_pred HHHHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCC--
Q ss_conf 4211024431113-41----0344554420244035510113578657984003698999--9659989999853308--
Q gi|254780453|r 149 VQARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVR-- 219 (238)
Q Consensus 149 ~~a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~-- 219 (238)
-.....|+-|.=. .+ ..++++|+.. +-.+ +-|-|.. ||+++ +...||-+|||.+|.+
T Consensus 171 Y~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~~~~~~~~ADGvIVGSaiVk~I 236 (266)
T PRK13114 171 YYVSVAGITGMQQAAQASIEAAVARIKAAT-DLPV--AVGFGVR-----------TPEQAAAIARVADGVVVGSAFVDLI 236 (266)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEECCCC-----------CHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 998445566776566588999999999707-9986--9983669-----------8999999980099999819999999
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q ss_conf ---88889999999998665
Q gi|254780453|r 220 ---AADPVSAAQEFQRAISL 236 (238)
Q Consensus 220 ---a~dP~~aa~~i~~~i~~ 236 (238)
..|+.+..++|.++++.
T Consensus 237 ~e~~~~~~~~v~~~~k~l~~ 256 (266)
T PRK13114 237 GEHGADAAAPVEELTKTLAD 256 (266)
T ss_pred HHCCCCHHHHHHHHHHHHHH
T ss_conf 87371556899999999999
No 44
>PRK13140 consensus
Probab=97.50 E-value=0.0016 Score=43.17 Aligned_cols=207 Identities=17% Similarity=0.200 Sum_probs=112.7
Q ss_pred CCCCCE--EEEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHH--CCCHHHHHHHH---HHC---HHHHH---H-HHHCC
Q ss_conf 578988--99960799899999999738-85228998689984--25589999998---515---46678---7-76404
Q gi|254780453|r 10 DEKKRL--VVGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSF--SGGLELARDLI---SDG---KSVFL---D-MKLFD 74 (238)
Q Consensus 10 ~kk~~l--ivALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~--~~G~~~i~~l~---k~~---~~If~---D-~K~~D 74 (238)
++|+-| ++-+-+++.+..+++++.+. ..++++++|.||-. ..|+-+-+.-. +.| ..+|. + +|-.+
T Consensus 11 ~kk~~li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~ 90 (257)
T PRK13140 11 KKKDILSIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQ 90 (257)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 69971688881828987999999999997599999978988987765899999999999869989999999999743689
Q ss_pred HH-------HHHH-----HHHHHHCCCCCEEEEEECCC-H-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 24-------6789-----87765215675089972460-4-677776530235531046664147776887652012104
Q gi|254780453|r 75 IG-------SSVT-----AAIEHIANMGVAMLTVHAYP-Q-TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 75 Ip-------nTv~-----~~v~~~~~~g~d~iTvH~~~-~-~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
+| |++. ..++.+.+.|+|.+.+.-.| + ......+.+++++..++-...-| .+.+.++.+--
T Consensus 91 ~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~~i~~I~lvaPt-t~~~Ri~~i~~---- 165 (257)
T PRK13140 91 IPLILMGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDDYQEHYKEIFEKYGLKNIMLITPQ-TSEERIREIDS---- 165 (257)
T ss_pred CCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHH----
T ss_conf 8889990559998517999999999849986983599856758999999998699779986899-98999999997----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-C----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEE
Q ss_conf 8876544542110244311134-1----034455442024403551011357865798400369899--99659989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVCS-P----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~s-~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVV 213 (238)
...-+.-.....|+-|.=.. + ..++++|+...+-.+. -|-|.. ||++ .+..+||-+||
T Consensus 166 --~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~~~~~Pv~--vGFGIs-----------~~e~v~~~~~~aDGvIV 230 (257)
T PRK13140 166 --HTDGFIYMVSSASTTGAQQDFNNQKRAYFKRIKDMNLKNPRM--VGFGIS-----------NKATFNAACEYASGAII 230 (257)
T ss_pred --HCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE--EEECCC-----------CHHHHHHHHHCCCEEEE
T ss_conf --399966870365666887665156899999999827899869--980579-----------89999999831999998
Q ss_pred CCHHC----CCCCHHHHHHHHHHHHHH
Q ss_conf 85330----888889999999998665
Q gi|254780453|r 214 SRPIV----RAADPVSAAQEFQRAISL 236 (238)
Q Consensus 214 GR~I~----~a~dP~~aa~~i~~~i~~ 236 (238)
|.+|. ++.||.++..+|.++++.
T Consensus 231 GSaivk~i~e~~~~~~~v~~fv~~lk~ 257 (257)
T PRK13140 231 GSAFVKLLKEEKNPEKAILKFVKEIKK 257 (257)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 799999998779878999999999629
No 45
>PRK08227 aldolase; Validated
Probab=97.45 E-value=0.0014 Score=43.54 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=110.7
Q ss_pred CCCCEEEEEEC-------CCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHH--HHHH---CCHH-H
Q ss_conf 78988999607-------99899999999738852289986899842558999999851546678--7764---0424-6
Q gi|254780453|r 11 EKKRLVVGLDL-------PTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFL--DMKL---FDIG-S 77 (238)
Q Consensus 11 kk~~livALD~-------~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~--D~K~---~DIp-n 77 (238)
...-++|++|- +=+++....++.+-++.+++=.+.=+...+-+. ..+..+++ +--. .|-. .
T Consensus 48 sGR~v~VpiDHG~~~GPi~GLed~~~~I~~l~~~aDAi~l~kGilr~~~~~------~~~~~lil~~s~~t~~~~~~~~k 121 (291)
T PRK08227 48 TGRTVMLAFDHGYFQGPTTGLERIDINIAPLFEYADVLMCTRGILRSVVPP------ATNKPVVLRASGGNSILKELSNE 121 (291)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECHHHHHHHCCC------CCCCEEEEEEECCCCCCCCCCCC
T ss_conf 998899972676434886663167999999860399899766776320467------79940799980687666787887
Q ss_pred HHHHHHHHHCCCCCEEEEEECCC------HHHHH---HHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 78987765215675089972460------46777---7653023553104666414777688765201210488765445
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAYP------QTMRS---AVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~~------~~l~~---~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
.+...++.+..+|+|.+.+|.+- .|++. ..+.+...+.=++++... ..+. ..+ .+.+..-+
T Consensus 122 ~lv~sVeeAvrlGAdAVsv~v~iGs~~E~~~l~~lg~v~~e~~~~GmPlla~~~~----g~~~-----~~d-~~~va~aa 191 (291)
T PRK08227 122 AVAVDMEDAVRLNVCAVAAQVFIGSEYETQSIKNIIQLVDAGLRYGMPTMAVTAV----GKDM-----VRD-ARYFSLAT 191 (291)
T ss_pred EEEECHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC----CCCC-----CCC-HHHHHHHH
T ss_conf 5553499998679978999863599328999999999999999829987998346----8777-----777-89999999
Q ss_pred HHHHHCCCCCCCCC--CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHH
Q ss_conf 42110244311134--1034455442024403551011357865798400369899996599899998533088888999
Q gi|254780453|r 149 VQARDIGMGGIVCS--PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSA 226 (238)
Q Consensus 149 ~~a~~~g~~GvV~s--~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~a 226 (238)
++|.+.|+|=+=+. ++..+++-+- .+-..++..|=+. +|..=....++|++.||--+++||-|.+++||.+.
T Consensus 192 Ria~ELGADiVKt~yt~e~f~~Vv~a-~pvPVliaGG~k~-----~d~e~L~~v~~a~~aGa~Gv~~GRNVfQ~~~P~~~ 265 (291)
T PRK08227 192 RIAAEMGAQIIKTYYVEKGFERITAG-CPVPIVIAGGKKL-----PERDALEMCYQAIDQGASGVDMGRNIFQSDAPVAM 265 (291)
T ss_pred HHHHHHCCCEEECCCCHHHHHHHHHC-CCCCEEEECCCCC-----CHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHH
T ss_conf 99999789988506973459999964-8997899679989-----86999999999997699368724002358998999
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780453|r 227 AQEFQRAI 234 (238)
Q Consensus 227 a~~i~~~i 234 (238)
++.+..-+
T Consensus 266 ~~Al~~iV 273 (291)
T PRK08227 266 IKAVHAVV 273 (291)
T ss_pred HHHHHHHH
T ss_conf 99999986
No 46
>PRK13119 consensus
Probab=97.45 E-value=0.012 Score=37.56 Aligned_cols=206 Identities=14% Similarity=0.230 Sum_probs=111.7
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHH--CCCHHHHHHHH---HHCH---HHH---HHHH--HC
Q ss_conf 5789889--996079989999999973-885228998689984--25589999998---5154---667---8776--40
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSF--SGGLELARDLI---SDGK---SVF---LDMK--LF 73 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~--~~G~~~i~~l~---k~~~---~If---~D~K--~~ 73 (238)
+.++-++ +-+=++|.+..+++++.+ ...++++++|.||-. ..|+-+-+.-. +.|. .+| ..++ ..
T Consensus 12 ~~~kali~yltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~ 91 (261)
T PRK13119 12 DGGKALIPYITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDT 91 (261)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 48973898864838998999999999996699999978988886665899999999999779978899999998651489
Q ss_pred CHH-------HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 424-------678-----987765215675089972460-4677776530235531046664147776887652012104
Q gi|254780453|r 74 DIG-------SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 74 DIp-------nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
|+| |.+ +..++.+.+.|+|.+.+.-.| +......+.+++.+..++-...-|+ +++.++.+.
T Consensus 92 ~~pivlMtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~----- 165 (261)
T PRK13119 92 QTPVVLMGYLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTT-TEDRIKTIA----- 165 (261)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHH-----
T ss_conf 98989984037898862999999999759857983689978879999999975997644307999-899999999-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEE
Q ss_conf 887654454211024431113-41----034455442024403551011357865798400369899--99659989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVV 213 (238)
+...-+.-.....|+-|.-. .. ..++.+|+.. +-.+ +-|-|.. ||++ .+..+||-+||
T Consensus 166 -~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~aDGvIV 230 (261)
T PRK13119 166 -ELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYI-DIPI--GVGFGIS-----------NAESARKIGRVADAVIV 230 (261)
T ss_pred -HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCE--EEEECCC-----------CHHHHHHHHCCCCEEEE
T ss_conf -7289819997366666877555488999999998636-9987--9983659-----------99999998734999998
Q ss_pred CCHHCC-----CCCHHHHHHHHHHHHHH
Q ss_conf 853308-----88889999999998665
Q gi|254780453|r 214 SRPIVR-----AADPVSAAQEFQRAISL 236 (238)
Q Consensus 214 GR~I~~-----a~dP~~aa~~i~~~i~~ 236 (238)
|.+|.+ ++|+.....+|.++++.
T Consensus 231 GSaiV~~i~~~~~~~~~~v~~~vk~lk~ 258 (261)
T PRK13119 231 GSRIVKEIENNAGNEAAAVGALVKELKD 258 (261)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 2899999986688768999999999998
No 47
>PRK13126 consensus
Probab=97.42 E-value=0.0026 Score=41.81 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=98.6
Q ss_pred CCCCCCEE--EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHH--CCCHHHHHHHHH----HC-----HHHHHHHHHCCH
Q ss_conf 15789889--996079989999999973885228998689984--255899999985----15-----466787764042
Q gi|254780453|r 9 VDEKKRLV--VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSF--SGGLELARDLIS----DG-----KSVFLDMKLFDI 75 (238)
Q Consensus 9 ~~kk~~li--vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~--~~G~~~i~~l~k----~~-----~~If~D~K~~DI 75 (238)
|.+|+-|+ +-.-+++.+..+++++.+...++++++|.||-. ..|+-+ ++-.. .+ .++++=.=+...
T Consensus 2 ~~~r~ali~yitaG~P~~~~t~~~l~~l~~gaDiiElGiPFSDP~ADGPvI-Q~A~~~Al~~G~~~~~~pivlM~Y~N~~ 80 (237)
T PRK13126 2 MISRPGLGVYLTAGWPSADTFLEALAGLSGLVDFFELGIPTPNPKYDGPYI-RLAHREAEEPGWDAPKAPTYLMAYWEDY 80 (237)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf 877752688871717987999999998554899999899888877768999-9999999985998568758999729877
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC----HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC--CCHHHHHHHHHH
Q ss_conf 4678987765215675089972460----4677776530235531046664147776887652012--104887654454
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAYP----QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE--KDISDMVRMRAV 149 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~~----~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~--~~~~~~v~~~a~ 149 (238)
.+-....++.+.+.|+|.+.+.-.| +-.....+.+++.+...+-...-|+ .+..++.+--. ..++ +
T Consensus 81 ~~g~~~f~~~~~~aGvdGlIipDLP~e~~ee~~~~~~~~~~~gl~~I~lv~ptt-~~~ri~~i~~~s~gfiY--v----- 152 (237)
T PRK13126 81 AGSPAELFETAAEVGARGVLAPDLLIDFPGDLERYLELSREYGLAPSFFIPSKF-PHRLLRRLASLEPDFIY--L----- 152 (237)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHCCCEEE--E-----
T ss_conf 656999999998749973883688877817789999999976997799738998-39999999985898799--9-----
Q ss_pred HHHHCCCCCCCCC---CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEECCHHCCC
Q ss_conf 2110244311134---10344554420244035510113578657984003698999---96599899998533088
Q gi|254780453|r 150 QARDIGMGGIVCS---PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGASHIVVSRPIVRA 220 (238)
Q Consensus 150 ~a~~~g~~GvV~s---~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVVGR~I~~a 220 (238)
...|.-|.-.+ ...++.+|+...+-.+.+==||+ ||+++ .+.|||-+|||.+|.+.
T Consensus 153 --s~~gvTG~~~~~~~~~~i~~ir~~~~~~Pv~vGFGI~-------------t~e~~~~~~~~~aDGvIVGSaiV~~ 214 (237)
T PRK13126 153 --GLYAATGIELPVYVERNVKTIRGLAGDVYLVAGFAID-------------SPEKAARLVKAGADGVVVGTAFMRR 214 (237)
T ss_pred --EEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC-------------CHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf --8652667641567999999999857899779994539-------------9999999986489999987899999
No 48
>PRK13131 consensus
Probab=97.42 E-value=0.013 Score=37.28 Aligned_cols=209 Identities=14% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCCCEE--EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHH--CCCHHH----HHHHHHH----CHHHHHHHH--HCCH
Q ss_conf 789889--996079989999999973-885228998689984--255899----9999851----546678776--4042
Q gi|254780453|r 11 EKKRLV--VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSF--SGGLEL----ARDLISD----GKSVFLDMK--LFDI 75 (238)
Q Consensus 11 kk~~li--vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~--~~G~~~----i~~l~k~----~~~If~D~K--~~DI 75 (238)
+|+-++ +-+-+++.+..+++++.+ ...++++++|.||-. ..|+-+ .+-|+.- .+.++..++ ..|+
T Consensus 9 ~~~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~~~~~ 88 (257)
T PRK13131 9 EKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDYNHHI 88 (257)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99458988618689988999999999977999999789988855455999999999997898899999999987049998
Q ss_pred H-------HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHH
Q ss_conf 4-------678-----987765215675089972460-467777653023553104666414777688765201210488
Q gi|254780453|r 76 G-------SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISD 142 (238)
Q Consensus 76 p-------nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~ 142 (238)
| |++ .+.++.+.+.|+|.+.+.-.| +--....+.+++.+..++-...-|+ +++.++.+--.
T Consensus 89 pivlM~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt-~~~Ri~~i~~~----- 162 (257)
T PRK13131 89 PIGLLAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNA-SVKDLEQVATH----- 162 (257)
T ss_pred CEEEECCHHHHHHHCHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHC-----
T ss_conf 889992768999857999999998659985655899967889999999977984799728999-88999999835-----
Q ss_pred HHHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHH
Q ss_conf 76544542110244311134-----1034455442024403551011357865798400369899996599899998533
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPI 217 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I 217 (238)
..-+.-.....|+-|.-.+ ..-++++|+.. +..+. -|-|....+ | ..++...|||-+|||.+|
T Consensus 163 -s~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGIs~~e---~-----v~~~~~~gaDGvIVGSai 230 (257)
T PRK13131 163 -SQGYIYTLARSGVTGASHTLENDASAIIKTLKTFS-PTPAL--LGFGISKKE---H-----ITNAKGMGADGVICGSAL 230 (257)
T ss_pred -CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEE--EECCCCCHH---H-----HHHHHHCCCCEEEECHHH
T ss_conf -89749998457677986434076999999999668-99879--980579889---9-----999985599999987899
Q ss_pred CC-----CCCHHHHHHHHHHHHHHH
Q ss_conf 08-----888899999999986651
Q gi|254780453|r 218 VR-----AADPVSAAQEFQRAISLI 237 (238)
Q Consensus 218 ~~-----a~dP~~aa~~i~~~i~~~ 237 (238)
.+ ..|..+.++++.+-++.+
T Consensus 231 V~~I~~~~~~~~~~~~~i~~fv~~l 255 (257)
T PRK13131 231 VKIIEENLNNENAMLEKIKGFIGGM 255 (257)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999872788899999999999986
No 49
>PRK13121 consensus
Probab=97.39 E-value=0.014 Score=37.09 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=105.1
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHH----HHHHHCH---HHH---HHH-H-HCCHH-----
Q ss_conf 996079989999999973-8852289986899842--5589999----9985154---667---877-6-40424-----
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELAR----DLISDGK---SVF---LDM-K-LFDIG----- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~----~l~k~~~---~If---~D~-K-~~DIp----- 76 (238)
+-.-.++.+..+++++.+ ...++++++|.||-.. .|+-+-+ -|+ .|. .+| ..+ | ..++|
T Consensus 23 ~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~-~G~~~~~~~~~~~~~r~~~~~~PivlM~ 101 (265)
T PRK13121 23 ITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALA-HGVSLRQVLAMVKEFRETNQTTPVVLMG 101 (265)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 707189989999999999976999999789889977658999999999997-7998467799999831037999989862
Q ss_pred --HHHH-----HHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf --6789-----87765215675089972460-467777653023553104666414777688765201210488765445
Q gi|254780453|r 77 --SSVT-----AAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 77 --nTv~-----~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
|.+. +.++.+.+.|+|.+.+.-.| +-.....+.+++.+...+-...-|+ +++.++.+.- ...-+.
T Consensus 102 Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt-~~~Ri~~i~~------~~~gFi 174 (265)
T PRK13121 102 YANPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTS-TDERIAAVAR------VASGYV 174 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHH------HCCCEE
T ss_conf 145999971999999998729873434899989999999999865996689958999-8999999996------289809
Q ss_pred HHHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC--
Q ss_conf 42110244311134-----1034455442024403551011357865798400369899--99659989999853308--
Q gi|254780453|r 149 VQARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR-- 219 (238)
Q Consensus 149 ~~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~-- 219 (238)
-.....|+-|.-.. ...++++|+.. +-. ++-|-|.. ||++ .+..+||-+|||.+|.+
T Consensus 175 Y~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~P--v~vGFGIs-----------~~e~~~~v~~~ADGvIVGSaiV~~i 240 (265)
T PRK13121 175 YYVSLKGVTGAATLDVSSVAAKLPAIRSHV-PLP--VGVGFGIR-----------DAATARAVAEVADAVVIGSRLVQLI 240 (265)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--EEEECCCC-----------CHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 997555566777566288999999998547-998--59976889-----------8999999981199999848999999
Q ss_pred CCC-HHHH---HHHHHHHHH
Q ss_conf 888-8999---999999866
Q gi|254780453|r 220 AAD-PVSA---AQEFQRAIS 235 (238)
Q Consensus 220 a~d-P~~a---a~~i~~~i~ 235 (238)
.++ +.+. +.+|.++|+
T Consensus 241 ~~~~~e~~~~~v~~fi~~lk 260 (265)
T PRK13121 241 EQAPPERAAAALTDFLAELR 260 (265)
T ss_pred HHCCHHHHHHHHHHHHHHHH
T ss_conf 85785768999999999999
No 50
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.36 E-value=0.0012 Score=44.07 Aligned_cols=202 Identities=17% Similarity=0.255 Sum_probs=109.5
Q ss_pred EEEEEECC---------CHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHH--HHHHHC----CHH-H
Q ss_conf 89996079---------989999999973-885228998689984255899999985154667--877640----424-6
Q gi|254780453|r 15 LVVGLDLP---------TVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVF--LDMKLF----DIG-S 77 (238)
Q Consensus 15 livALD~~---------~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If--~D~K~~----DIp-n 77 (238)
+++|+|-- .+++.-.+++.+ ...++++=.+.=+...+......+ .+++ ++-+.. |-+ .
T Consensus 2 ~i~p~DHG~~~~~gp~~gl~d~~~~i~~~~~~g~dai~~~~G~~~~~~~~~~~~-----~~li~~ls~~t~~~~~~~~~~ 76 (235)
T cd00958 2 VILAVDHGIEHGFGPNPGLEDPEETVKLAAEGGADAVALTKGIARAYGREYAGD-----IPLIVKLNGSTSLSPKDDNDK 76 (235)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCC-----CCEEEEECCCCCCCCCCCCHH
T ss_conf 799426886457998866459899999998649999998888997515321578-----766999646764578885177
Q ss_pred HHHHHHHHHCCCCCEEEEEECCC------HHHHHHHH---HHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 78987765215675089972460------46777765---3023553104666414777688765201210488765445
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAYP------QTMRSAVS---VVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~~------~~l~~~~~---~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
+....++-+..+|+|.+.+|... .|++...+ .+...+.-+++.+..- .+.+++ ..-.+.+..-+
T Consensus 77 ~l~~sVeeAvrlGAdaV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~ypr---G~~~~~----~~d~~~ia~aa 149 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR---GPAVKN----EKDPDLIAYAA 149 (235)
T ss_pred HHHCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC---CCCCCC----CCCHHHHHHHH
T ss_conf 66516999983555679999868981689999999999999998399789997416---876556----56689999999
Q ss_pred HHHHHCCCCCCC-C----CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCH
Q ss_conf 421102443111-3----41034455442024403551011357865798400369899996599899998533088888
Q gi|254780453|r 149 VQARDIGMGGIV-C----SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADP 223 (238)
Q Consensus 149 ~~a~~~g~~GvV-~----s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP 223 (238)
++|.+.|.| +| + ++...+++-+-+ +-..++..|=+ ..+++.=....++|++.||--+++||-|.+++||
T Consensus 150 Ria~ELGAD-iVKv~y~g~~e~f~~vv~~~-~vPVviaGG~k----~~~~~~~L~~v~~a~~aGa~Gv~~GRNvfQ~~~p 223 (235)
T cd00958 150 RIGAELGAD-IVKTKYTGDAESFKEVVEGC-PVPVVIAGGPK----KDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDP 223 (235)
T ss_pred HHHHHHCCC-EEEECCCCCHHHHHHHHHHC-CCCEEECCCCC----CCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCH
T ss_conf 999997899-89823999989999999708-99899808999----9999999999999997699567636412258889
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780453|r 224 VSAAQEFQRAI 234 (238)
Q Consensus 224 ~~aa~~i~~~i 234 (238)
.+.++.++.-+
T Consensus 224 ~~~~~al~~iV 234 (235)
T cd00958 224 VAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999740
No 51
>PRK13133 consensus
Probab=97.32 E-value=0.013 Score=37.32 Aligned_cols=197 Identities=12% Similarity=0.160 Sum_probs=105.3
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHH---HHH------HHCCHH--
Q ss_conf 996079989999999973885-2289986899842--5589999998---5154---667---877------640424--
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDGK---SVF---LDM------KLFDIG-- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If---~D~------K~~DIp-- 76 (238)
+-+-++|.+..+++++.+... ++++++|.||-.. .|+-+-+--. +.|. .+| ..+ |-.++|
T Consensus 21 itaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~~Piv 100 (267)
T PRK13133 21 YMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKITVPIL 100 (267)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 56869998999999999997599989978998886666899999999999869989999999999973024346687787
Q ss_pred -----HHHH-----HHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHH
Q ss_conf -----6789-----87765215675089972460-467777653023553104666414777688765201210488765
Q gi|254780453|r 77 -----SSVT-----AAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVR 145 (238)
Q Consensus 77 -----nTv~-----~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~ 145 (238)
|++. +.++.+.+.|+|.+.+.-.| +--....+.+++++..++-...-|+ +++.++.+-- ...
T Consensus 101 lMtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt-~~eRi~~i~~------~s~ 173 (267)
T PRK13133 101 LMGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPEEAIDFLERAKNFGLTVVFLISPVT-PPERIEFIDS------LST 173 (267)
T ss_pred EHHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHH------CCC
T ss_conf 156457999847799999999869878877899968889999999846986024428999-9999999984------278
Q ss_pred HHHHHHHHCCCCCCC----CC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEEC
Q ss_conf 445421102443111----34-----10344554420244035510113578657984003698999--96599899998
Q gi|254780453|r 146 MRAVQARDIGMGGIV----CS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVS 214 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV----~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVG 214 (238)
-+.-.....|+.|.- .+ .+.++++|+.. +..+. -|-|.. ||+++ +..-||-+|||
T Consensus 174 GFiY~vs~~GvTG~~~~~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~~~~i~~~ADGvIVG 239 (267)
T PRK13133 174 DFSYCLAVNATTGTAKLSDAGTEAAVDEYLKRVRQHT-KKKFV--VGFGIK-----------DRERVEHMWELADGAVVG 239 (267)
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCEE--EECCCC-----------CHHHHHHHHHHCCEEEEC
T ss_conf 9579998001346775555426789999999999718-99879--966879-----------999999998229999987
Q ss_pred CHHC----CCCCHHHHHHH---HHHHH
Q ss_conf 5330----88888999999---99986
Q gi|254780453|r 215 RPIV----RAADPVSAAQE---FQRAI 234 (238)
Q Consensus 215 R~I~----~a~dP~~aa~~---i~~~i 234 (238)
.+|. ++.+|.+.++. |.+++
T Consensus 240 SaiV~~i~~~~~~~e~~~~~~~f~~~l 266 (267)
T PRK13133 240 TALLQHIAGAGTPQETARLAGEFWQSL 266 (267)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 899999983799689999999999861
No 52
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=97.26 E-value=0.0038 Score=40.74 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=30.4
Q ss_pred ECCHHH---HHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 369899---996599899998533088888999999999866
Q gi|254780453|r 197 FATPET---ALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 197 ~~tp~~---Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
+.||++ |++.||+.+|||.+||+ |....++|.+.|+
T Consensus 153 i~tPe~a~~a~~~GA~aVVVGsAITr---P~~IT~~F~~ai~ 191 (192)
T pfam04131 153 YNTPELAKKAIEIGADAVTVGSAITR---LEEITQWFIEAIK 191 (192)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCC---HHHHHHHHHHHHH
T ss_conf 89999999999839989998965379---8999999999972
No 53
>PRK13137 consensus
Probab=97.24 E-value=0.021 Score=36.00 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=108.6
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHH--CCCHHHHHHHH---HHCH---HHHH---H-HHHCCHH-------H
Q ss_conf 996079989999999973885228998689984--25589999998---5154---6678---7-7640424-------6
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSF--SGGLELARDLI---SDGK---SVFL---D-MKLFDIG-------S 77 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~--~~G~~~i~~l~---k~~~---~If~---D-~K~~DIp-------n 77 (238)
+-.-++|.+..+++++.+....+++++|.||-. ..|+-+-+--. +.|. .+|. . ++..++| |
T Consensus 31 itaG~P~~~~s~~~~~~l~~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~~PivlM~Y~N 110 (266)
T PRK13137 31 LTAGYPSAAGFLQVAEELLAYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTDTPLVIMTYLN 110 (266)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECHH
T ss_conf 66818887899999999973899899789988856657999999999997798677899999975556898789993458
Q ss_pred HH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 78-----987765215675089972460-467777653023553104666414777688765201210488765445421
Q gi|254780453|r 78 SV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 78 Tv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
++ ++.++.+.+.|+|.+.+.=.| +--....+.+++.+..++-...-|+ +++.++.+-- ...-+.-..
T Consensus 111 ~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtT-~~eRi~~i~~------~a~GFiY~V 183 (266)
T PRK13137 111 PIYAVGPEEFMRLFQEAGVDGLILPDLPPDQDPEIADLAAEIGLAVTFLIAPTS-TPERVKLVAR------ACTGFLYAV 183 (266)
T ss_pred HHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHH------HCCCCEEEE
T ss_conf 998758999999999769609994799978889999999875997899937999-9999999996------088828997
Q ss_pred HHCCCCCCCC--CCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHC----C
Q ss_conf 1024431113--4103----44554420244035510113578657984003698999--965998999985330----8
Q gi|254780453|r 152 RDIGMGGIVC--SPQE----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIV----R 219 (238)
Q Consensus 152 ~~~g~~GvV~--s~~e----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~----~ 219 (238)
...|+-|.-. +..+ ++++|+.. +-.+.+ |-|.. ||+++ +...||-+|||.++. +
T Consensus 184 s~~GvTG~r~~~~~~~l~~~i~~ik~~t-~~Pv~v--GFGIs-----------~~e~~~~~~~~aDGvIVGSaiV~~i~e 249 (266)
T PRK13137 184 SVTGVTGMREGLALGEVPDMLRLARQYA-ALPVAV--GFGVK-----------DKATAAQVAQVADGVVVGSAFINAVEE 249 (266)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEE--ECCCC-----------CHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_conf 4467667776678799999999998638-998799--82669-----------889999998319999980999999995
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 888899999999986
Q gi|254780453|r 220 AADPVSAAQEFQRAI 234 (238)
Q Consensus 220 a~dP~~aa~~i~~~i 234 (238)
.+|+.+-++++.+-.
T Consensus 250 ~~d~~~~~~el~~~~ 264 (266)
T PRK13137 250 GRDVAALAQEIAAGC 264 (266)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 898999999999874
No 54
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.23 E-value=0.0043 Score=40.44 Aligned_cols=182 Identities=13% Similarity=0.164 Sum_probs=93.7
Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHH-HCCC-CCEEEEC-----HHHHHCCCHHHHHHHHHHCHHHHH-HHHHCCHHHHHH
Q ss_conf 57898899960-7998999999997-3885-2289986-----899842558999999851546678-776404246789
Q gi|254780453|r 10 DEKKRLVVGLD-LPTVKEAERIVSI-LSDT-VSFYKIG-----YHLSFSGGLELARDLISDGKSVFL-DMKLFDIGSSVT 80 (238)
Q Consensus 10 ~kk~~livALD-~~~~~e~l~l~~~-l~~~-i~~iKig-----~~l~~~~G~~~i~~l~k~~~~If~-D~K~~DIpnTv~ 80 (238)
..+.||.|-.. ..+.....+.++. |... |..+-+- ...+......+..-.++++.+++. |
T Consensus 10 ~~~~rLYLITP~~~d~~~~~~~l~~aL~~g~Va~vqlR~k~~d~~~~~~~a~~L~~lc~~~gv~lIIND----------- 78 (221)
T PRK06512 10 ESRCRIVLVAPPIADGAALAKLLRAALSGGDVASVILPDYGLDEATFQKQAEKYVPVIQEAGAAALIAG----------- 78 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-----------
T ss_conf 998758997899746678999999998469855999757999999999999999999998299199889-----------
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 87765215675089972460467777653023553104666414777688765201210488765445421102443111
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV 160 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV 160 (238)
-+.-+...|+|.+-+-.....+..+.+.... -.++|++...|. +.+..|.+.|.|-+-
T Consensus 79 -~~dlA~~~gADGVHlGq~d~~~~~aR~~lg~--~~IIG~~~~~s~-------------------~~A~~A~e~GADYv~ 136 (221)
T PRK06512 79 -DTRIAGRVKADGLHIEGNAAALAEAIEKHAP--KMIVGFGNLRDR-------------------HGAMEVGELQPDYLF 136 (221)
T ss_pred -CHHHHHHCCCCEEEECCCCCCHHHHHHHHCC--CCEEEEECCCCH-------------------HHHHHHHHCCCCEEE
T ss_conf -7999997099866526875319999998478--867864057889-------------------999999973998576
Q ss_pred CC-----------CHHHHHH---HHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHH
Q ss_conf 34-----------1034455---442024403551011357865798400369899996599899998533088888999
Q gi|254780453|r 161 CS-----------PQEVRMV---REIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSA 226 (238)
Q Consensus 161 ~s-----------~~ei~~i---r~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~a 226 (238)
.. |..+..+ ++.+ +-..+.-.||.+. +..+.+.+|||++=|.++|..++||.++
T Consensus 137 fG~~~~~~k~~a~~~~l~~l~~~~~~~-~iP~VAIGGIt~~-----------n~~~v~~aGad~vAVisaI~~a~Dp~~A 204 (221)
T PRK06512 137 FGKLGADNKPEAHPRNLSLAEWWAEMI-EIPCIVQAGSDLA-----------SIVEVAETGAEFVALGRAVFDAHDPPLA 204 (221)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHCC-CCCEEEECCCCHH-----------HHHHHHHHCCCEEEEHHHHHCCCCHHHH
T ss_conf 578788889988754258999999747-9998998278999-----------9999998199899885996089999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998665
Q gi|254780453|r 227 AQEFQRAISL 236 (238)
Q Consensus 227 a~~i~~~i~~ 236 (238)
+++++..+.+
T Consensus 205 ~~~l~~llde 214 (221)
T PRK06512 205 VAEANALLDE 214 (221)
T ss_pred HHHHHHHHHC
T ss_conf 9999998733
No 55
>PRK13112 consensus
Probab=97.18 E-value=0.024 Score=35.61 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=104.6
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHH--CCCHHHHHHHH---HHCH---HHH---HHH-HH-CCHH------
Q ss_conf 99607998999999997388-5228998689984--25589999998---5154---667---877-64-0424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSF--SGGLELARDLI---SDGK---SVF---LDM-KL-FDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~--~~G~~~i~~l~---k~~~---~If---~D~-K~-~DIp------ 76 (238)
+-.-+++.+..+++++.+.. .++++++|.||-. ..|+-+-+--. +.|. .+| ..+ |. .++|
T Consensus 24 itaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~PivlM~Y 103 (279)
T PRK13112 24 FMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKDDDTTPIVLMGY 103 (279)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 60738997899999999987799989978998986665799999999999769968899999998513489988799851
Q ss_pred -HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -678-----987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r 77 -SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 -nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
|.+ ...++.+.+.|+|.+.+.-.| +......+.+++.+..++-...-|+ +++.++.+.-.. .-+.-
T Consensus 104 ~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~~i~~I~lvaPtt-~~eRi~~i~~~s------~GFiY 176 (279)
T PRK13112 104 YNPIYIYGVERFLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKAGINFIRLATPTT-DDKRLPKVLANT------SGFVY 176 (279)
T ss_pred CHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHCC------CCCEE
T ss_conf 24998847999999999739987984699978889999999857834699825899-899999998527------88089
Q ss_pred HHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC---
Q ss_conf 2110244311134-----1034455442024403551011357865798400369899--99659989999853308---
Q gi|254780453|r 150 QARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR--- 219 (238)
Q Consensus 150 ~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~--- 219 (238)
.....|+-|.-.. ..-++++|+.. +-.+.+ |-|.. ||++ .+..+||-+|||.+|.+
T Consensus 177 ~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~v--GFGIs-----------~~e~~~~~~~~aDGvIVGSAiVk~Ie 242 (279)
T PRK13112 177 YVSMTGITGSALADTSAVGEAVARIKRHT-DLPVCV--GFGVK-----------TPEQARAIAAHADGVVVGTAIVNALA 242 (279)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEE--EECCC-----------CHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 98356666766456488999999999717-898767--83569-----------99999999725999998779999998
Q ss_pred -C--------CCHHHHHHHHHHHHHH
Q ss_conf -8--------8889999999998665
Q gi|254780453|r 220 -A--------ADPVSAAQEFQRAISL 236 (238)
Q Consensus 220 -a--------~dP~~aa~~i~~~i~~ 236 (238)
+ .++.++..++.++++.
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~l~~ 268 (279)
T PRK13112 243 GSLDEDGKATADTVAAVADLVAALAE 268 (279)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 54674110045799999999999999
No 56
>PRK13123 consensus
Probab=97.17 E-value=0.018 Score=36.32 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=107.6
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHHHHHHH--CCHH-------HH
Q ss_conf 996079989999999973885-2289986899842--5589999998---5154---66787764--0424-------67
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDGK---SVFLDMKL--FDIG-------SS 78 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If~D~K~--~DIp-------nT 78 (238)
+-+=.++.+..+++++.+... ++++++|.||-.. .|+-+-+--. +.|. .+|..++- .++| |.
T Consensus 21 itaG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~PivlMtY~N~ 100 (256)
T PRK13123 21 IMAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLKAILQALIEKETQIPLVIMTYINP 100 (256)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEHHHH
T ss_conf 61868997899999999997699999978998886665799999899998679969999988763057998897404258
Q ss_pred H-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8-----987765215675089972460-4677776530235531046664147776887652012104887654454211
Q gi|254780453|r 79 V-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQAR 152 (238)
Q Consensus 79 v-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~ 152 (238)
+ ...++.+.+.|+|.+.|.=.| +.-....+.+++++..++-...-|+ +++.++.+.- ...-+.-...
T Consensus 101 i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~liaPtt-~~~Ri~~i~~------~a~GFiY~Vs 173 (256)
T PRK13123 101 VFQYGIERFVEDLAETGVKGLIIPDLPYEHQDFIAPLLRDTDIALIPLVSLTS-PIERQKEIIK------EAEGFIYAVA 173 (256)
T ss_pred HHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHH------CCCCCEEEEE
T ss_conf 98718999999999749978973799967899999999976997786408999-3889999986------0788489974
Q ss_pred HCCCCCCCCC-C----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCCC--CCH
Q ss_conf 0244311134-1----0344554420244035510113578657984003698999--96599899998533088--888
Q gi|254780453|r 153 DIGMGGIVCS-P----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVRA--ADP 223 (238)
Q Consensus 153 ~~g~~GvV~s-~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~a--~dP 223 (238)
..|+-|.-.+ + ..++++|+.. +-.+ +-|-|.. ||+++ +...||-+|||.++.+- ++.
T Consensus 174 ~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~aDGvIVGSaiv~~i~~~~ 239 (256)
T PRK13123 174 VNGVTGKRGNYRDDLDSHLEKLKSIA-HIPV--LAGFGIS-----------TLEDVERFNAVCDGVIVGSKIVELLHEGK 239 (256)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCCE--EEECCCC-----------CHHHHHHHHHHCCEEEEHHHHHHHHHHCC
T ss_conf 45566765333388999999998568-9987--9976889-----------99999999713999997299999999779
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998665
Q gi|254780453|r 224 VSAAQEFQRAISL 236 (238)
Q Consensus 224 ~~aa~~i~~~i~~ 236 (238)
.+...+|.++|++
T Consensus 240 ~~ei~~fi~~~k~ 252 (256)
T PRK13123 240 EEEICEFIQAAKQ 252 (256)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998
No 57
>PRK13122 consensus
Probab=97.15 E-value=0.014 Score=37.05 Aligned_cols=194 Identities=16% Similarity=0.234 Sum_probs=101.1
Q ss_pred EEECCCHHHHHHHHHHHCCCCCEEEECHHHHH--CCCHHHH----HHHHHHC---HHHHHHHHH----CCHH-------H
Q ss_conf 96079989999999973885228998689984--2558999----9998515---466787764----0424-------6
Q gi|254780453|r 18 GLDLPTVKEAERIVSILSDTVSFYKIGYHLSF--SGGLELA----RDLISDG---KSVFLDMKL----FDIG-------S 77 (238)
Q Consensus 18 ALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~--~~G~~~i----~~l~k~~---~~If~D~K~----~DIp-------n 77 (238)
.-| +|..+.++.+.+ .-++++++|.||-. ..|+-+- +-|+ .| ..+|..++- .++| |
T Consensus 10 ~g~-pd~~~~~~~l~~--~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~-~G~~~~~~~~~l~~~r~~~~~pivlM~Y~N 85 (242)
T PRK13122 10 MGN-KDLIENATLLSE--NGADIIEIGVPFSDPVADGPVIMEAGQQAIK-QGITIDYIFNQLEKHGDQIKCNYVLMTYYN 85 (242)
T ss_pred CCC-CCHHHHHHHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCCCCEEEEEECH
T ss_conf 689-999999999997--5999999789888866658999999999997-699899999999973136798779998516
Q ss_pred HH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 78-----987765215675089972460-467777653023553104666414777688765201210488765445421
Q gi|254780453|r 78 SV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 78 Tv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
.+ .+.++.+.+.|+|.+.+.-.| +--....+..++.+..++-...-| .+++.++.+.-. ..-+.-..
T Consensus 86 ~i~~~G~~~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lvaPt-t~~~Ri~~i~~~------s~GFiY~v 158 (242)
T PRK13122 86 IICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMT-TDDKRIKDIVSH------AEGFIYTV 158 (242)
T ss_pred HHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHH------CCCCEEEE
T ss_conf 98872799999999876998677789987889999999986798689871899-989999999982------99966987
Q ss_pred HHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCC--CCC
Q ss_conf 10244311134-----10344554420244035510113578657984003698999--9659989999853308--888
Q gi|254780453|r 152 RDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVR--AAD 222 (238)
Q Consensus 152 ~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~--a~d 222 (238)
...|+-|.=.. ...++++|+.. +..+. -|-|.. ||+++ +..+||-+|||.++.+ .++
T Consensus 159 s~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~v~~i~~~ADGvIVGSaivk~i~~~ 224 (242)
T PRK13122 159 TMNATTGQNGAFHPELKRKIESIKAIA-NVPVV--AGFGIR-----------TPQHVADIKEVADGIVIGSEIVKRFKSN 224 (242)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEE--EECCCC-----------CHHHHHHHHHHCCEEEECHHHHHHHHHC
T ss_conf 335435765556588999999999725-99858--715879-----------9999999981199999848999999967
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999998665
Q gi|254780453|r 223 PVSAAQEFQRAISL 236 (238)
Q Consensus 223 P~~aa~~i~~~i~~ 236 (238)
..+.+.+|.++++.
T Consensus 225 ~~e~~~~~i~~l~~ 238 (242)
T PRK13122 225 TREEIIKYLQSIQQ 238 (242)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999999
No 58
>PRK13138 consensus
Probab=97.14 E-value=0.026 Score=35.35 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=102.7
Q ss_pred EEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHHH---HH-H-HCCHH------
Q ss_conf 9960799899999999738-852289986899842--5589999998---5154---6678---77-6-40424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVFL---DM-K-LFDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If~---D~-K-~~DIp------ 76 (238)
+-+-+++.+..+++++.+. ..++++++|.||-.. .|+-+-+--. +.|. .+|. ++ | ..++|
T Consensus 19 itaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlM~Y 98 (264)
T PRK13138 19 ISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPEIPLVYLTY 98 (264)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 67879998999999999997799989979988886665899999999999779908897446776033589888897521
Q ss_pred -HHH-----HHHHHHHCCCCCEEEEEECCCH---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf -678-----9877652156750899724604---6777765302355310466641477768876520121048876544
Q gi|254780453|r 77 -SSV-----TAAIEHIANMGVAMLTVHAYPQ---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMR 147 (238)
Q Consensus 77 -nTv-----~~~v~~~~~~g~d~iTvH~~~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~ 147 (238)
|++ ...++.+.+.|+|.+.|.=.|. -........++.+..++-...-|+ +++.++.+.- ...-+
T Consensus 99 ~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~~E~~~~~~~~~~~~i~~I~liaPtt-~~~Ri~~i~~------~s~gF 171 (264)
T PRK13138 99 FNPLFSMGLEAFTERAKNSGIQGLIIPDLPFDTPEAEEFFSQLERKKIDFIHLVTPAT-TEDRIQSMKS------FASGF 171 (264)
T ss_pred HHHHHHHCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHH------HCCCE
T ss_conf 2389884899999999876977585368986503359999999986998675217999-8999999997------38880
Q ss_pred HHHHHHCCCCCCCC--C---CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC---
Q ss_conf 54211024431113--4---103445544202440355101135786579840036989999659989999853308---
Q gi|254780453|r 148 AVQARDIGMGGIVC--S---PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR--- 219 (238)
Q Consensus 148 a~~a~~~g~~GvV~--s---~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~--- 219 (238)
.-.....|+-|--. + ..-++++|+.. +-.+. -|-|... -+|. ..+..+||-+|||.+|.+
T Consensus 172 iY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGIs~---~e~~------~~~~~~ADGvIVGSaiv~~i~ 239 (264)
T PRK13138 172 IYYVTSYGVTGERGAIASGLEDRIQMVRKIV-GLPVC--AGFGIST---ADQA------KEISTYADGVIIGSAVQKIIE 239 (264)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEE--EEECCCC---HHHH------HHHHHCCCEEEECHHHHHHHH
T ss_conf 8987545667876555376999999999743-89838--8606798---9999------999834999998199999999
Q ss_pred -C-CCH---HHHHHHHHHHHH
Q ss_conf -8-888---999999999866
Q gi|254780453|r 220 -A-ADP---VSAAQEFQRAIS 235 (238)
Q Consensus 220 -a-~dP---~~aa~~i~~~i~ 235 (238)
+ .++ .+...+|.++|+
T Consensus 240 ~~~~~~~~~~~~v~~~~~~lk 260 (264)
T PRK13138 240 ENGSDRENCADKLFAYASEIR 260 (264)
T ss_pred HCCCCHHHHHHHHHHHHHHHH
T ss_conf 727877789999999999999
No 59
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.14 E-value=0.013 Score=37.28 Aligned_cols=208 Identities=19% Similarity=0.175 Sum_probs=102.1
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHC--CCHHHHHHHH-------HHC----HHHHHH-HHHCC
Q ss_conf 157898899960799899999999738852289986899842--5589999998-------515----466787-76404
Q gi|254780453|r 9 VDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFS--GGLELARDLI-------SDG----KSVFLD-MKLFD 74 (238)
Q Consensus 9 ~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~--~G~~~i~~l~-------k~~----~~If~D-~K~~D 74 (238)
|+-|+||+-|+|..+- ++++. ..+-.....|-|+-.. |.....++|. +.+ ++++.. .+...
T Consensus 1 ~~lk~RIiPaiDi~~g----k~Vkg-~~~~~~~~~gdP~~~a~~~~~~Gad~lhlvDld~a~~~~~~n~~~I~~i~~~~~ 75 (252)
T PRK13597 1 MSLAKRIVPCLDVHAG----RVVKG-VNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVF 75 (252)
T ss_pred CCCCCCEEEEEEEECC----EEEEC-CCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9978627999998999----88878-777786788899999999998699999999564666686637999999986269
Q ss_pred HHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHH
Q ss_conf 2467898------776521567508997246----046777765302355310466641477768876520121048876
Q gi|254780453|r 75 IGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMV 144 (238)
Q Consensus 75 IpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v 144 (238)
+|=|+-+ .++.+.+.|+|-+.+... |+-++++.+..... .-++++-.--..+.....-.+......-..
T Consensus 76 vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~np~~i~~~~~~fG~q-~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~ 154 (252)
T PRK13597 76 IPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQ-AVVLAIDARWRGDFPEVHVAGGRVPTGLHA 154 (252)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCC-CEEEEEEEEECCCCCEEEECCCEEECCCCH
T ss_conf 8289847713089999998569877983266674937899999874996-529999888618974167538727569769
Q ss_pred HHHHHHHHHCCCCCCCCC---------CHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 544542110244311134---------103---44554420244035510113578657984003698999965998999
Q gi|254780453|r 145 RMRAVQARDIGMGGIVCS---------PQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 145 ~~~a~~a~~~g~~GvV~s---------~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
...+....+.|+..+++. +-+ ++.+++.. +-.++.+.|++-.. .-.++.+.|++-+|
T Consensus 155 ~d~~~~~~~~G~geil~tdI~rDGt~~G~d~~l~~~i~~~~-~~pvIasGGv~s~~----------dl~~l~~~g~~gvi 223 (252)
T PRK13597 155 VEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV-GVPVIASGGAGRME----------HFLEAFQAGAEAAL 223 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCHH----------HHHHHHHCCCCEEE
T ss_conf 99999999648999999757376844476959999998507-99899978989999----------99999878996998
Q ss_pred ECCHHCCCCCHHHHHHHHHHH
Q ss_conf 985330888889999999998
Q gi|254780453|r 213 VSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 213 VGR~I~~a~dP~~aa~~i~~~ 233 (238)
+|+++|..+-..+.+++|...
T Consensus 224 ~G~al~~~~~s~~e~k~~L~~ 244 (252)
T PRK13597 224 AASVFHFGEIPIPELKRYLAE 244 (252)
T ss_pred EHHHHHCCCCCHHHHHHHHHH
T ss_conf 712767799999999999998
No 60
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.12 E-value=0.0029 Score=41.50 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=83.6
Q ss_pred HHHHHHCCCCCEEEEEECCC------HHHHHHH---HHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 87765215675089972460------4677776---53023553104666414777688765201210488765445421
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYP------QTMRSAV---SVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~------~~l~~~~---~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
..++.+..+|+|.+.+|.+. .|++... +.+...+.-+++.+.-- ...+. . ..-.+.+..-+++|
T Consensus 97 ~sVeeAvrlGAdaV~~~v~~Gs~~E~~~l~~l~~l~~ea~~~GlPll~~~ypr---G~~~~---~-~~d~~~ia~aaRia 169 (266)
T PRK07226 97 GTVEDAIKLGADAVSVHVNVGSETEAEMLEDLGRIARECEEWGMPLLAMMYPR---GPKIK---N-EYDPEVVAHAARVG 169 (266)
T ss_pred CCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC---CCCCC---C-CCCHHHHHHHHHHH
T ss_conf 14999985587789998547998379999999999999998599569997346---88777---7-87599999999999
Q ss_pred HHCCCCCCC-CC----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHH
Q ss_conf 102443111-34----1034455442024403551011357865798400369899996599899998533088888999
Q gi|254780453|r 152 RDIGMGGIV-CS----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSA 226 (238)
Q Consensus 152 ~~~g~~GvV-~s----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~a 226 (238)
.+.|.| +| +. ++..+.+-+-+ +-.+++..|=+... |..=....+++++.||--+++||-|.+++||.+.
T Consensus 170 ~ELGAD-iVKv~y~gd~e~f~~vv~~~-~vPVliaGG~k~~~----~~~~L~~v~~ai~aGa~Gv~~GRNvfQ~~~p~~~ 243 (266)
T PRK07226 170 AELGAD-IIKTNYTGDPESFREVVEGC-PVPVVIAGGPKTGS----DLEFLQMVEDAMEAGAAGVAIGRNIFQHEDPAKI 243 (266)
T ss_pred HHHCCC-EEEECCCCCHHHHHHHHHHC-CCCEEEECCCCCCC----HHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHH
T ss_conf 996799-89835999989999999847-98789957888898----8999999999997599466526102357989999
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780453|r 227 AQEFQRAI 234 (238)
Q Consensus 227 a~~i~~~i 234 (238)
++.+..-+
T Consensus 244 ~~al~~iV 251 (266)
T PRK07226 244 TRAISAVV 251 (266)
T ss_pred HHHHHHHH
T ss_conf 99999985
No 61
>PRK13132 consensus
Probab=97.11 E-value=0.028 Score=35.18 Aligned_cols=180 Identities=16% Similarity=0.237 Sum_probs=96.8
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHHH---HHHHCCHH-------H
Q ss_conf 996079989999999973-8852289986899842--5589999998---5154---6678---77640424-------6
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVFL---DMKLFDIG-------S 77 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If~---D~K~~DIp-------n 77 (238)
+-+=++|.+..+++++.+ ...++++++|.||-.. .|+-+-+.-. +.|. .+|. ..| .|+| |
T Consensus 17 itaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir-~~~pivlM~Y~N 95 (246)
T PRK13132 17 IVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVK-TKKALVFLVYYN 95 (246)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC-CCCCEEEEEECH
T ss_conf 8285899899999999999749998997898888765589999999999877998999999999753-699979996010
Q ss_pred HHH-----HHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 789-----87765215675089972460-467777653023553104666414777688765201210488765445421
Q gi|254780453|r 78 SVT-----AAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 78 Tv~-----~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
++. ..++.+.+.|+|.+.+.-.| +-.....+.+++.+..++-...-|| ++.++.+--. ..-+.-..
T Consensus 96 ~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lvaPTs--~~R~~~i~~~------s~gfiY~v 167 (246)
T PRK13132 96 LIFAYGLEKFVKKAKELGISGLIVPDLPFEESEELIKECEKYNIALIPLISVTS--PKRAKKILKH------AKGFIYAL 167 (246)
T ss_pred HHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHC------CCCCEEEE
T ss_conf 887729999999998769985775799978989999999985997014425797--8999999954------89827997
Q ss_pred HHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC
Q ss_conf 10244311134-----1034455442024403551011357865798400369899--99659989999853308
Q gi|254780453|r 152 RDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR 219 (238)
Q Consensus 152 ~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~ 219 (238)
...|+-|.-.. ...++++|+.. +..+. -|-|.. ||++ .++.+||-+|||.++.+
T Consensus 168 s~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~v~~~~~~aDGvIVGSa~v~ 228 (246)
T PRK13132 168 GSIGVTGTKSVEEARLKDKVKEIKSFT-DLPVA--VGFGIK-----------NNQDVKRMRKYADGVIVGTSIVK 228 (246)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEE--EECCCC-----------CHHHHHHHHHCCCEEEECHHHHH
T ss_conf 535677776663688999999999628-99869--977989-----------99999999822999997099999
No 62
>PRK13115 consensus
Probab=97.09 E-value=0.027 Score=35.28 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=106.0
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHHC--CCHHHHH----HHHHHCH---HHHH---HHHHCCHH-------
Q ss_conf 99607998999999997388-52289986899842--5589999----9985154---6678---77640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSFS--GGLELAR----DLISDGK---SVFL---DMKLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~~--~G~~~i~----~l~k~~~---~If~---D~K~~DIp------- 76 (238)
+-+-+++.+..+++++.+.. .++++++|.||-.. .|+-+-+ -|+ .|. .+|. -++=.|+|
T Consensus 30 itaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~-~G~~~~~~f~~v~~~~~~~~PivlM~Y~ 108 (269)
T PRK13115 30 LPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALR-GGVRVRDVFRAVEAISAAGGRALVMTYW 108 (269)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCCCEEEHHHH
T ss_conf 527389989999999999966999999799988856668999999999997-7995999999999841579988854754
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|.+ .+.++.+.+.|+|.+.|.=.| +--....+..++.+..++-...-|+. ++.++.+-- ...-+.-.
T Consensus 109 N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~-~eRi~~i~~------~a~GFIY~ 181 (269)
T PRK13115 109 NPVLRYGVDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSST-PERLAETVE------ASRGFVYA 181 (269)
T ss_pred HHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCC-HHHHHHHHH------CCCCCEEE
T ss_conf 89987369999999997399807647899789999999998658128998589998-899999984------48880899
Q ss_pred HHHCCCCCCCCC-C----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCCC--C
Q ss_conf 110244311134-1----0344554420244035510113578657984003698999--96599899998533088--8
Q gi|254780453|r 151 ARDIGMGGIVCS-P----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVRA--A 221 (238)
Q Consensus 151 a~~~g~~GvV~s-~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~a--~ 221 (238)
....|+-|.-.+ + .-++++|+.. +-.+ +-|-|.. ||+++ +...||-+|||.++.+. +
T Consensus 182 Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~~~~~~~~aDGvIVGSa~V~~i~~ 247 (269)
T PRK13115 182 ASTMGVTGARDAVSSAAPELVARVRAAS-DIPV--CVGLGVS-----------SAAQAAEIAGYADGVIVGSALVSALLD 247 (269)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCC--EEECCCC-----------CHHHHHHHHHHCCEEEECHHHHHHHHH
T ss_conf 7545456776444177999999999717-9981--7972789-----------999999998029999986899999997
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999998665
Q gi|254780453|r 222 DPVSAAQEFQRAISL 236 (238)
Q Consensus 222 dP~~aa~~i~~~i~~ 236 (238)
+..++.+++.++++.
T Consensus 248 ~g~~~v~~~~~el~~ 262 (269)
T PRK13115 248 GGLPAVRALTEELAA 262 (269)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 597999999999999
No 63
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.04 E-value=0.014 Score=37.16 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 034455442024403551011357865798400369899996599899998533088888999999999866519
Q gi|254780453|r 164 QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLIS 238 (238)
Q Consensus 164 ~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~~ 238 (238)
..++.+++.+ +-.++--.||...+ ..+.+..|+|.+-|=++|+.|+||.++++++.+.++.-+
T Consensus 282 ~~l~~~~~~~-~iPvvAIGGI~~~N-----------~~~v~~aGa~gvAVisAI~~A~DP~~aa~~ll~~l~~~~ 344 (345)
T PRK02615 282 EYLKYARKEA-NIPWFAIGGIDKSN-----------ISEVLQAGADRVAVVRAIMNAEDPKQATQELLEQLSREN 344 (345)
T ss_pred HHHHHHHHHC-CCCEEEECCCCHHH-----------HHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999837-99999999969999-----------999998599999982285579999999999999973049
No 64
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.92 E-value=0.011 Score=37.74 Aligned_cols=197 Identities=15% Similarity=0.244 Sum_probs=102.3
Q ss_pred EEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHC--CCHHHHHHHH---HHC------HHHHHH-HHHCCHH-------
Q ss_conf 996079989999999973885-2289986899842--5589999998---515------466787-7640424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFS--GGLELARDLI---SDG------KSVFLD-MKLFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~--~G~~~i~~l~---k~~------~~If~D-~K~~DIp------- 76 (238)
+-+-+++.+..+++++.+... ++++++|.||-.. .|+-+-+--+ +.| +.++.. ++.+++|
T Consensus 6 ~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~~~pivlM~Y~ 85 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY 85 (242)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 73778997999999999997699999978998887765899999999999769949999999999873479888999844
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ .+.++.+.+.|+|.+.+.-.| +--....+.+++.+...+-...-|+ +++.++.+- +...-+.-.
T Consensus 86 N~i~~~G~e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~lvsPtt-~~~ri~~i~------~~s~gfiY~ 158 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIA------ELASGFIYY 158 (242)
T ss_pred HHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHH------HHCCCEEEE
T ss_conf 5766528999999999759975870699957846899999865983889968988-789999999------747984999
Q ss_pred HHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCCC---
Q ss_conf 110244311134-----10344554420244035510113578657984003698999--96599899998533088---
Q gi|254780453|r 151 ARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVRA--- 220 (238)
Q Consensus 151 a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~a--- 220 (238)
....|+-|.-.+ ..-++++|+.. +..+. -|-|.. ||+++ +...||-+|||.++.+.
T Consensus 159 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~--vGFGI~-----------~~e~v~~~~~~aDGvIVGSa~V~~i~~ 224 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYT-DLPIA--VGFGIS-----------TPEQAAEVAKYADGVIVGSALVKIIEE 224 (242)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEE--EECCCC-----------CHHHHHHHHHHCCEEEECHHHHHHHHH
T ss_conf 8577777877556499999999998716-89748--743879-----------999999999659999987899999996
Q ss_pred CC---HHHHHHHHHHHH
Q ss_conf 88---899999999986
Q gi|254780453|r 221 AD---PVSAAQEFQRAI 234 (238)
Q Consensus 221 ~d---P~~aa~~i~~~i 234 (238)
.. ..+..+++.+++
T Consensus 225 ~~~~~~~~~~~~~~~~l 241 (242)
T cd04724 225 GGEEEALEALKELAESL 241 (242)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 39688999999999972
No 65
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=96.91 E-value=0.012 Score=37.58 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHH----HHHHCHHHHHHHHHCC---HHHHHHHHHHHHCCCCCEEE
Q ss_conf 9989999999973885228998689984255899999----9851546678776404---24678987765215675089
Q gi|254780453|r 22 PTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARD----LISDGKSVFLDMKLFD---IGSSVTAAIEHIANMGVAML 94 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~----l~k~~~~If~D~K~~D---IpnTv~~~v~~~~~~g~d~i 94 (238)
....+..++++.-++||+++|+|+-...-+..+.+++ .++++.+++..-=+.. .++-+..+++.+.++|++.+
T Consensus 23 l~~~~~eD~Le~~g~yID~~K~g~gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~~~~~d~y~~~~~~lGf~~i 102 (245)
T pfam02679 23 LGPRFLEDLLESAGDYIDFLKFGWGTSALMPEDILKEKIDLAHEHGVYVYTGGTLFEIAILQGKFDEYLRECKELGFDAI 102 (245)
T ss_pred CCHHHHHHHHHHHHHHEEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHCCCCEE
T ss_conf 99899999998613333589976876501788999999999998599484796999999973839999999998699889
Q ss_pred EEECC----C-HHHHHHHHHHCCCCCCEE
Q ss_conf 97246----0-467777653023553104
Q gi|254780453|r 95 TVHAY----P-QTMRSAVSVVRDTGICLL 118 (238)
Q Consensus 95 TvH~~----~-~~l~~~~~~~~~~~~~il 118 (238)
=|... + +...+.++.+.+.+.+++
T Consensus 103 EiSdg~i~i~~~~~~~~I~~~~~~G~~v~ 131 (245)
T pfam02679 103 EISDGSIELPEEERLRLIRKAKKAGFKVL 131 (245)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 95688446898999999999997899796
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.87 E-value=0.015 Score=36.92 Aligned_cols=182 Identities=20% Similarity=0.335 Sum_probs=104.4
Q ss_pred CCCCCEEEEEEC------CCHHHHHHHHHH-HCCCCCEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHHHC--C----H
Q ss_conf 578988999607------998999999997-38852289986899842558999999851-54667877640--4----2
Q gi|254780453|r 10 DEKKRLVVGLDL------PTVKEAERIVSI-LSDTVSFYKIGYHLSFSGGLELARDLISD-GKSVFLDMKLF--D----I 75 (238)
Q Consensus 10 ~kk~~livALD~------~~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K~~--D----I 75 (238)
+-|..|||+|-- .+.+-..+++.. ...-..++-+ .|.+-|+.+++. +.||+-=-|-. | |
T Consensus 2 ~lkg~LIVSCQA~~~ePl~~~~im~~mA~Aa~~gGA~giR~-------~~~~dI~aik~~v~lPIIGi~K~~~~~s~VyI 74 (222)
T PRK01130 2 QLKGGLIVSCQALPGEPLHSPEIMAAMALAAEQGGAVGIRA-------NGVEDIKAIREVVDVPIIGIIKRDYPDSEVYI 74 (222)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEC-------CCHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
T ss_conf 65688799970799899788799999999999689629971-------89889999998479987999954689997375
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC----C--HHHHHHHHHHCCC-CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 467898776521567508997246----0--4677776530235-53104666414777688765201210488765445
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAY----P--QTMRSAVSVVRDT-GICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~----~--~~l~~~~~~~~~~-~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
--|+. .+..+.+.|+|++-+-+- | ..+.+.++..++. +..+++- .+++++ +
T Consensus 75 TPt~~-ev~~l~~aGadiIA~DaT~R~RP~g~~~~~~i~~i~~~~~~l~MAD--~st~ee-------------------a 132 (222)
T PRK01130 75 TPTLK-EVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEKPGQLLMAD--CSTLEE-------------------G 132 (222)
T ss_pred CCCHH-HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEE--CCCHHH-------------------H
T ss_conf 17699-9999998699999984678989899689999999999829878985--488999-------------------9
Q ss_pred HHHHHCCCC-------CCC-------CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH---HHHCCCCEE
Q ss_conf 421102443-------111-------341034455442024403551011357865798400369899---996599899
Q gi|254780453|r 149 VQARDIGMG-------GIV-------CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET---ALKYGASHI 211 (238)
Q Consensus 149 ~~a~~~g~~-------GvV-------~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~---Ai~~GaD~i 211 (238)
..|.++|+| |.. ..+.+...+++....+.-++ ++| |+.||++ |++.||+.+
T Consensus 133 ~~A~~~G~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~~~pvI-----aEG-------ri~tPe~a~~al~~GA~aV 200 (222)
T PRK01130 133 LAAAKLGFDFIGTTLSGYTEYTEGETPEEPDFALLKELLKAGCPVI-----AEG-------RINTPEQAKKALELGAHAV 200 (222)
T ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE-----EEC-------CCCCHHHHHHHHHCCCCEE
T ss_conf 9999849999972334567676778789986999999995899899-----747-------9899999999998499899
Q ss_pred EECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 998533088888999999999866
Q gi|254780453|r 212 VVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 212 VVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
|||.+||+ |....++|.+.|+
T Consensus 201 vVGsAITr---P~~IT~~F~~ai~ 221 (222)
T PRK01130 201 VVGSAITR---PEEITKWFVDALK 221 (222)
T ss_pred EECCCCCC---HHHHHHHHHHHHH
T ss_conf 98975479---8999999999973
No 67
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=96.84 E-value=0.048 Score=33.63 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=113.3
Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHHHC-CCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHH
Q ss_conf 57898899960-799899999999738852289986899842-55899999985154667877640424678-----987
Q gi|254780453|r 10 DEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLSFS-GGLELARDLISDGKSVFLDMKLFDIGSSV-----TAA 82 (238)
Q Consensus 10 ~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~~~-~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~ 82 (238)
.-+|||++.-- +++.+...+-++.-+..+..+-+--.-... .+..+++.+...++. =.|||. +.+
T Consensus 6 ~f~SRL~lGTgky~s~~~~~~ai~aSg~eivTVAlRR~~~~~~~~~~~l~~i~~~~~~--------iLPNTAGc~tA~EA 77 (246)
T pfam05690 6 TFDSRLLLGTGKYPSPEVLKEAIRASGAEIVTVALRRVNAGQPGGENFLDLLDWLGIT--------LLPNTAGCRTAEEA 77 (246)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCE--------ECCCCCCCCCHHHH
T ss_conf 8674447873899999999999999689779989863058888842588864133866--------77763011889999
Q ss_pred HH------HHCCCCCEEEEE--EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHH
Q ss_conf 76------521567508997--24-----60---4677776530235531046664147776---887652012104887
Q gi|254780453|r 83 IE------HIANMGVAMLTV--HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDM 143 (238)
Q Consensus 83 v~------~~~~~g~d~iTv--H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~ 143 (238)
++ .+. +.+++-+ ++ .| ++++++....++ +-.++ --++-|. +.|.+.|+..-+.
T Consensus 78 Vr~A~laRE~~--~t~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~e-GF~Vl---pY~~~D~v~akrLed~Gc~avMP-- 149 (246)
T pfam05690 78 VRTARLAREAF--GTNWIKLEVIGDSKTLLPDPIETLKAAEILVKE-GFTVL---PYTTDDPVLARRLEEAGCAAVMP-- 149 (246)
T ss_pred HHHHHHHHHHC--CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EECCCCHHHHHHHHHCCCEEEEE--
T ss_conf 99999999970--997489998269887798878999999999978-99898---86179989999998759849862--
Q ss_pred HHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCC
Q ss_conf 654454211024-4311134103445544202440355101135786579840036989999659989999853308888
Q gi|254780453|r 144 VRMRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 144 v~~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~d 222 (238)
++...| =.|+. -|.-++.+++.. +-.++|--|||.+.+ .-+|++.|+|-+-|--+|-+|+|
T Consensus 150 ------lgsPIGSg~Gl~-n~~~l~~i~e~~-~vPvIVDAGiG~pS~----------Aa~aMElG~DaVLvNTAIA~A~d 211 (246)
T pfam05690 150 ------LGAPIGSGLGLR-NPENLRIIIEEA-DVPVIVDAGIGTPSD----------AAQAMELGADAVLLNTAIARAKD 211 (246)
T ss_pred ------CCCCCCCCCCCC-CHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEHHHHHHCCCC
T ss_conf ------244013688868-999999999967-998898489896788----------99999745677773067773799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999866
Q gi|254780453|r 223 PVSAAQEFQRAIS 235 (238)
Q Consensus 223 P~~aa~~i~~~i~ 235 (238)
|...|+.|+..+.
T Consensus 212 Pv~MA~A~~~Av~ 224 (246)
T pfam05690 212 PVAMARAFKLAVE 224 (246)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 68
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.83 E-value=0.044 Score=33.87 Aligned_cols=194 Identities=14% Similarity=0.193 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH
Q ss_conf 9741123115789889996079989999999973-885228998689984255899999985154667877640424678
Q gi|254780453|r 1 MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV 79 (238)
Q Consensus 1 ~~~~~~~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv 79 (238)
|.+--+++.-++++++--+=..+.++++.+++.+ ..-+..+++-+. .....+.|+++++....+ -+ -.|...
T Consensus 1 mm~~~~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~--t~~a~~~I~~l~~~~p~~----~i-GaGTV~ 73 (210)
T PRK07455 1 MMTQDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWN--SDQPAELISQLREKLPEC----II-GTGTLL 73 (210)
T ss_pred CCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHCCCC----EE-EEEECC
T ss_conf 97799999999799799997599999999999999879988999689--988999999999878996----89-888187
Q ss_pred -HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -987765215675089972460467777653023553-104666414777688765201210488765445421102443
Q gi|254780453|r 80 -TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMG 157 (238)
Q Consensus 80 -~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~ 157 (238)
...++.+.+.|++++- +|+.-.+..+.+++.+. .+=|| +|. .+. ..|.+.|++
T Consensus 74 ~~e~~~~a~~aGA~FiV---SP~~~~~vi~~a~~~~i~~iPGv--~Tp---sEi-----------------~~A~~~G~~ 128 (210)
T PRK07455 74 TLEDLEEAIAAGAQFCF---TPHVDLELIQAAVAADIPIIPGA--LTP---TEI-----------------VTAWQAGAS 128 (210)
T ss_pred CHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCC--CCH---HHH-----------------HHHHHCCCC
T ss_conf 89999999986999998---68888999999998299765886--999---999-----------------999986998
Q ss_pred CC-------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC-----CCCCHHH
Q ss_conf 11-------13410344554420244035510113578657984003698999965998999985330-----8888899
Q gi|254780453|r 158 GI-------VCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV-----RAADPVS 225 (238)
Q Consensus 158 Gv-------V~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~-----~a~dP~~ 225 (238)
-+ +-.|.-++.++.-+++-.++-|.||.+. +..+-+++|+..+.+|..+. +++|-.+
T Consensus 129 ~vKlFPA~~~GG~~ylkal~~p~p~i~~~ptGGV~~~-----------n~~~yl~ag~~~vg~Gs~l~~~~~i~~~d~~~ 197 (210)
T PRK07455 129 CVKVFPVQAVGGADYIKSLQGPLGHIPLIPTGGVTLE-----------NAQAFIQAGAIAVGLSSQLFPKTLLAAQNWPA 197 (210)
T ss_pred EEEECCCHHCCCHHHHHHHHCCCCCCCEEECCCCCHH-----------HHHHHHHCCCEEEEECHHHCCHHHHHCCCHHH
T ss_conf 4775051320679999998654899938878998988-----------89999968997999884618988886189999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999986651
Q gi|254780453|r 226 AAQEFQRAISLI 237 (238)
Q Consensus 226 aa~~i~~~i~~~ 237 (238)
-.++-++.++.+
T Consensus 198 I~~~A~~~v~~~ 209 (210)
T PRK07455 198 ITQRAELLLQQL 209 (210)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999972
No 69
>PRK13134 consensus
Probab=96.78 E-value=0.053 Score=33.33 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=102.1
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHH----HHHHH-C-HHHHHHHH----HCCHH-------
Q ss_conf 996079989999999973-8852289986899842--5589999----99851-5-46678776----40424-------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELAR----DLISD-G-KSVFLDMK----LFDIG------- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~----~l~k~-~-~~If~D~K----~~DIp------- 76 (238)
+-+-+++.+..+++++.+ ...++++++|.||-.. .|+-+-+ -|++- . ..+|.-++ -.++|
T Consensus 25 itaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~~~pivlMtY~ 104 (257)
T PRK13134 25 LTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAARKGRLRAGLVLMGYL 104 (257)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 70707997999999999997799999978988887655899999999999679987899999998744689998998534
Q ss_pred HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 678-----987765215675089972460-46777765302355310466641477768876520121048876544542
Q gi|254780453|r 77 SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ 150 (238)
Q Consensus 77 nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~ 150 (238)
|++ .+.++.+.+.|+|.+.+.-.| +--....+..++.+..++-...-|+ +++.++.+.-. ..-+.-.
T Consensus 105 N~i~~yG~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt-~~~Ri~~i~~~------s~gFIY~ 177 (257)
T PRK13134 105 NPFMQYGFERFVRDAADAGVAGCIIPDLPLDEDADLRALLAARGMDLIALVGPNT-GEGRMREYAAV------ASGYVYV 177 (257)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHH------CCCEEEE
T ss_conf 5999746899999998679875994699977889999999975982699638999-99999999962------8880899
Q ss_pred HHHCCCCCCCC--C---CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCC----
Q ss_conf 11024431113--4---1034455442024403551011357865798400369899--99659989999853308----
Q gi|254780453|r 151 ARDIGMGGIVC--S---PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVR---- 219 (238)
Q Consensus 151 a~~~g~~GvV~--s---~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~---- 219 (238)
....|+-|.-. + ...++++|+.. +-. ++-|-|.. ||++ ++..+||-+|||.++.+
T Consensus 178 vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~P--v~vGFGIs-----------~~e~v~~~~~~aDGvIVGSaiVk~i~~ 243 (257)
T PRK13134 178 VSVMGTTGVRDGLPVEVADTLARARQCF-SIP--VALGFGIS-----------RPAQLEGLSHPPDAVIFGSALLRHLDA 243 (257)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHC-CCC--EEEECCCC-----------CHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 8435566876455288999999999706-998--79980679-----------999999997039999987999999997
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8888999999999
Q gi|254780453|r 220 AADPVSAAQEFQR 232 (238)
Q Consensus 220 a~dP~~aa~~i~~ 232 (238)
+.|+.+-.+.+.+
T Consensus 244 ~gd~a~~~k~~~~ 256 (257)
T PRK13134 244 GGDAASFMKAWAE 256 (257)
T ss_pred CCCHHHHHHHHHC
T ss_conf 8988999999740
No 70
>PRK13116 consensus
Probab=96.72 E-value=0.052 Score=33.41 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=97.6
Q ss_pred EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHH--CCCHHHHH----HHHHHCH---HHHH---H-HHH-CCHH-----
Q ss_conf 996079989999999973-885228998689984--25589999----9985154---6678---7-764-0424-----
Q gi|254780453|r 17 VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSF--SGGLELAR----DLISDGK---SVFL---D-MKL-FDIG----- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~--~~G~~~i~----~l~k~~~---~If~---D-~K~-~DIp----- 76 (238)
+-.-.++.+..+++++.+ ...++++++|.||-. ..|+-+-+ -|+ .|. .+|. . +|- -++|
T Consensus 23 itaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~-~G~~~~~~~~~v~~ir~~~~~~PivlM~ 101 (278)
T PRK13116 23 IMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALD-GGATVDSALEQIKRVRAAYPEVPIGMLI 101 (278)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 548489989999999999966999999799988856668999999999997-6986789999999840358987689980
Q ss_pred --HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf --678-----987765215675089972460-467777653023553104666414777688765201210488765445
Q gi|254780453|r 77 --SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 77 --nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
|++ .+.++.+.+.|+|.+.|.=.| +--....+..++.+..++-+.. ++.++..++.+. +...-+.
T Consensus 102 Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~~i~~I~l~~-ptt~~~ri~~I~------~~s~GFi 174 (278)
T PRK13116 102 YGNVPFTRGLDRFYQEFAEAGADSILLPDVPVREGAPFSAAAAAAGIDPIYIAP-ANASEKTLEGVS------AASKGYI 174 (278)
T ss_pred CCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHH------HHCCCEE
T ss_conf 572887727999999997769758994699978889999999865766699937-999599999999------7189739
Q ss_pred HHHHHCCCCCC--CCCCH----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 42110244311--13410----3445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 149 VQARDIGMGGI--VCSPQ----EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 149 ~~a~~~g~~Gv--V~s~~----ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
-.....|+-|. -.++. -++++|+.. +-.+. -|-|....+ | ..+++..+||-+|||.+|.+
T Consensus 175 Y~VS~~GvTG~~~~~~~~~l~~~i~~ik~~t-~~Pv~--vGFGIs~~e---~-----v~~~~~~~aDGVIVGSAiVk 240 (278)
T PRK13116 175 YAISRDGVTGTERESSTDGLSAVVDNIKKFD-GAPIL--LGFGISSPQ---H-----VADAIAAGASGAITGSAITK 240 (278)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEE--EECCCCCHH---H-----HHHHHHCCCCEEEECHHHHH
T ss_conf 9986352226886666789999999998457-99879--981679899---9-----99998668999998779999
No 71
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.67 E-value=0.064 Score=32.85 Aligned_cols=194 Identities=21% Similarity=0.354 Sum_probs=114.0
Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHH-HCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHH
Q ss_conf 57898899960-7998999999997388522899868998-4255899999985154667877640424678-----987
Q gi|254780453|r 10 DEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLS-FSGGLELARDLISDGKSVFLDMKLFDIGSSV-----TAA 82 (238)
Q Consensus 10 ~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~-~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~ 82 (238)
.-+|||++.-- +++.+...+-++.-+..+..+-+--.-. ...+..+++.+...++.+ .|||. +.+
T Consensus 7 ~f~SRLilGTgky~s~~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~~~~~--------LPNTAGc~ta~EA 78 (248)
T cd04728 7 TFSSRLLLGTGKYPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTL--------LPNTAGCRTAEEA 78 (248)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCEE--------CCCCCCCCCHHHH
T ss_conf 87743378648999999999999996897699998630578888526898752338668--------7654011679999
Q ss_pred HHH---HCC-CCCEEEEE--EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHH
Q ss_conf 765---215-67508997--24-----60---4677776530235531046664147776---88765201210488765
Q gi|254780453|r 83 IEH---IAN-MGVAMLTV--HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVR 145 (238)
Q Consensus 83 v~~---~~~-~g~d~iTv--H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~ 145 (238)
++. ..+ .+-+++-+ ++ .| ++++++....++ +-.++ --++-|. +.|.+.|+..-+.
T Consensus 79 vr~A~laRE~~~t~~IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~-GF~Vl---pY~~~D~v~akrLe~~Gc~avMP---- 150 (248)
T cd04728 79 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFTVL---PYCTDDPVLAKRLEDAGCAAVMP---- 150 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EECCCCHHHHHHHHHCCCEEEEE----
T ss_conf 99999999984898699998179767798868999999999988-99897---86788999999999749534520----
Q ss_pred HHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHH
Q ss_conf 4454211024-431113410344554420244035510113578657984003698999965998999985330888889
Q gi|254780453|r 146 MRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPV 224 (238)
Q Consensus 146 ~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~ 224 (238)
++...| =.|+. -+.-++.+++.. +-.++|--|||.+.+ .-+|++.|+|-+-|--+|-.|+||.
T Consensus 151 ----lgsPIGSg~Gl~-n~~~l~~i~e~~-~vPvIVDAGiG~pS~----------Aa~aMElG~daVL~NTAIA~A~dPv 214 (248)
T cd04728 151 ----LGSPIGSGQGLL-NPYNLRIIIERA-DVPVIVDAGIGTPSD----------AAQAMELGADAVLLNTAIAKAKDPV 214 (248)
T ss_pred ----CCCCCCCCCCCC-CHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf ----456434798879-999999999847-998898479997567----------8999872655334546877169989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999866
Q gi|254780453|r 225 SAAQEFQRAIS 235 (238)
Q Consensus 225 ~aa~~i~~~i~ 235 (238)
..|+.|+..+.
T Consensus 215 ~MA~A~~~AV~ 225 (248)
T cd04728 215 AMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 72
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=96.61 E-value=0.011 Score=37.72 Aligned_cols=211 Identities=17% Similarity=0.227 Sum_probs=123.8
Q ss_pred CCCCCCCCCCC---CCEEEEEEC--C-----CHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHH-HCHH----
Q ss_conf 74112311578---988999607--9-----98999999997388-5228998689984255899999985-1546----
Q gi|254780453|r 2 DAGLIIDVDEK---KRLVVGLDL--P-----TVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLIS-DGKS---- 65 (238)
Q Consensus 2 ~~~~~~~~~kk---~~livALD~--~-----~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k-~~~~---- 65 (238)
|..++-++.+| .-++|-||- + =+.+.-+.++++.+ |++++=+|. .+++.-.. .+.+
T Consensus 3 K~~Rl~Ri~~R~~~r~vivPmDHGit~Gpi~GLvdi~~tv~~V~~gGadAVL~hk--------Gi~~~~h~~~g~D~GlI 74 (259)
T TIGR01949 3 KKVRLERIFNREDGRTVIVPMDHGITLGPIDGLVDIRKTVNEVAEGGADAVLLHK--------GIARRGHREKGKDAGLI 74 (259)
T ss_pred CHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC--------CCCCCCCCCCCCCEEEE
T ss_conf 4112223100148877998667884567211111487899997607766785278--------71004565668316999
Q ss_pred HHHHHHHCCHHHH----HHHHHHHHCCCCCEEEEEECC-C-----HHHHHHHH---HHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 6787764042467----898776521567508997246-0-----46777765---302355310466641477768876
Q gi|254780453|r 66 VFLDMKLFDIGSS----VTAAIEHIANMGVAMLTVHAY-P-----QTMRSAVS---VVRDTGICLLAVTVLTSMDDFDLR 132 (238)
Q Consensus 66 If~D~K~~DIpnT----v~~~v~~~~~~g~d~iTvH~~-~-----~~l~~~~~---~~~~~~~~il~Vt~LTS~~~~~l~ 132 (238)
|=|-.=..==|+- ....++.+-.+|||.+++|-. | ++++++-. .+...+.=||+ -+....
T Consensus 75 vHLsAST~L~P~p~~K~~~~tVE~Ai~~GADAVS~HvNvGs~~e~d~~~~lg~vA~~ad~~GvPlLA-----MmYaRG-- 147 (259)
T TIGR01949 75 VHLSASTSLSPDPNDKRIVTTVEDAIRLGADAVSIHVNVGSDTEADQIEDLGDVAEIADDWGVPLLA-----MMYARG-- 147 (259)
T ss_pred EECCCCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHE-----CCCCCC--
T ss_conf 8604543258888787578514899732898679988648987389999998999988654884201-----127886--
Q ss_pred HHHCC-CCHHHHHHHHHHHHHHCCCCCCC-CCCH-HHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC
Q ss_conf 52012-10488765445421102443111-3410-344554420--2440355101135786579840036989999659
Q gi|254780453|r 133 ESGYE-KDISDMVRMRAVQARDIGMGGIV-CSPQ-EVRMVREIV--GHNMVIVTPGIRMLGSATDGQKRFATPETALKYG 207 (238)
Q Consensus 133 ~~g~~-~~~~~~v~~~a~~a~~~g~~GvV-~s~~-ei~~ir~~~--~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G 207 (238)
..+. ..-.+.|.+-++++.|.|.| +| +|=. ++.--++.+ ..-..++..|=.+.+...-.|. .++|+++|
T Consensus 148 -~~i~~e~d~~~v~HAaRlg~ElGAD-vvK~~Y~Gd~~SF~~VV~~c~~PVvvAGG~k~~s~~efLq~----v~DA~~aG 221 (259)
T TIGR01949 148 -PRIDDEVDPEVVAHAARLGEELGAD-VVKVPYTGDIDSFEEVVKACAVPVVVAGGPKLASDREFLQM----VKDAMEAG 221 (259)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH----HHHHHHHC
T ss_conf -8876644767888887653534577-66514317746799996217877787377798874677788----99999818
Q ss_pred CCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 98999985330888889999999998
Q gi|254780453|r 208 ASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 208 aD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
|--+=+||.|-++.+|..-++.++.-
T Consensus 222 AAGvs~GRnvFqh~~p~~~~~Av~~i 247 (259)
T TIGR01949 222 AAGVSVGRNVFQHDTPVAITKAVSAI 247 (259)
T ss_pred CCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 78231056301468878999999873
No 73
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=96.58 E-value=0.0038 Score=40.80 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 10344554420244035510113578657984003698999965998999985330888889999999998
Q gi|254780453|r 163 PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 163 ~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
|.++....+...+-.+++-.|||-.. +..++.++|||+||||-.|++..|-..+.+++.+.
T Consensus 170 p~~vi~~~~~~~~~~LivGGGIrs~e----------~A~~~~~aGAD~IVvGn~iee~~d~~~~~~~~~~~ 230 (231)
T pfam01884 170 PEEVIAVKKVLDDARLIVGGGIKSGE----------KAKEMARAGADVIVTGNVIEEKGDREMAIDAILET 230 (231)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCCHH----------HHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999646897689969979999----------99999977999999797144177699999999850
No 74
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.57 E-value=0.074 Score=32.42 Aligned_cols=194 Identities=22% Similarity=0.345 Sum_probs=113.5
Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHH-HCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHH
Q ss_conf 57898899960-7998999999997388522899868998-4255899999985154667877640424678-----987
Q gi|254780453|r 10 DEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLS-FSGGLELARDLISDGKSVFLDMKLFDIGSSV-----TAA 82 (238)
Q Consensus 10 ~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~-~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~ 82 (238)
.-+|||++.-- +++.+...+-++.-+..+..+-+--.-. ...+..+++.+...+..+ -|||. +.+
T Consensus 8 ~f~SRLilGTgky~s~~~~~~ai~aSg~eivTVAlRR~~~~~~~~~~~l~~i~~~~~~l--------LPNTAGc~ta~EA 79 (256)
T PRK00208 8 TFSSRLLLGTGKYPSPEVMQEAIEASGAEIVTVALRRVNLGDPGGDNLLDLLDPLGVTL--------LPNTAGCRTAEEA 79 (256)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCEE--------CCCCCCCCCHHHH
T ss_conf 97743478648999999999999996897799998642477898505888743158567--------6664032679999
Q ss_pred HHH---HCC-CCCEEEEE--EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHH
Q ss_conf 765---215-67508997--24-----60---4677776530235531046664147776---88765201210488765
Q gi|254780453|r 83 IEH---IAN-MGVAMLTV--HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVR 145 (238)
Q Consensus 83 v~~---~~~-~g~d~iTv--H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~ 145 (238)
++. ..+ .+-+++-+ ++ .| ++++++....++ +-.++ --|+-|. +.|.+.|+..-+.
T Consensus 80 Vr~A~laRE~~~tnwIKLEVi~D~~~LlPD~~etl~Aae~Lv~e-GF~Vl---pY~~~D~v~akrLe~~Gc~avMP---- 151 (256)
T PRK00208 80 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFVVL---PYCTDDPVLAKRLEEAGCAAVMP---- 151 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EECCCCHHHHHHHHHCCCEEEEE----
T ss_conf 99999999984898699998179767798868999999999988-99897---86788989999999749534520----
Q ss_pred HHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHH
Q ss_conf 4454211024-431113410344554420244035510113578657984003698999965998999985330888889
Q gi|254780453|r 146 MRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPV 224 (238)
Q Consensus 146 ~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~ 224 (238)
++...| -.|+. .+.-++.+++.. +-.++|--|||.+.+ .-+|++.|+|-+-|--+|-.|+||.
T Consensus 152 ----lgsPIGSg~Gl~-n~~~l~~i~e~~-~vPvIVDAGiG~pS~----------Aa~AMElG~DaVL~NTAIA~A~dPv 215 (256)
T PRK00208 152 ----LGAPIGSGLGLL-NPYNLRIIIEQA-DVPVIVDAGIGTPSD----------AAQAMELGADAVLLNTAIAVAGDPV 215 (256)
T ss_pred ----CCCCCCCCCCCC-CHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf ----456434798879-999999999867-998898578897667----------8999862554323556877269989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999866
Q gi|254780453|r 225 SAAQEFQRAIS 235 (238)
Q Consensus 225 ~aa~~i~~~i~ 235 (238)
..|+.|+..+.
T Consensus 216 ~MA~A~~~AV~ 226 (256)
T PRK00208 216 AMARAFKLAVE 226 (256)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 75
>PRK13136 consensus
Probab=96.57 E-value=0.025 Score=35.42 Aligned_cols=205 Identities=13% Similarity=0.160 Sum_probs=106.1
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHC--CCHHHHHHHH---HHCH---HHHHHH----HHCC
Q ss_conf 5789889--996079989999999973-8852289986899842--5589999998---5154---667877----6404
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFS--GGLELARDLI---SDGK---SVFLDM----KLFD 74 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~--~G~~~i~~l~---k~~~---~If~D~----K~~D 74 (238)
++++.++ +-.=.++.+..+++++.+ ...++++++|.||-.. .|+-+-+.-. +.|. .+|.-. +..+
T Consensus 9 ~~~kalI~yitaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~ 88 (253)
T PRK13136 9 KKSPAYVAYLTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSE 88 (253)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 67998588864848998999999999996599989978998886665799999999999869979999999998225789
Q ss_pred HH-------HHHHH----HHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHH
Q ss_conf 24-------67898----7765215675089972460-467777653023553104666414777688765201210488
Q gi|254780453|r 75 IG-------SSVTA----AIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISD 142 (238)
Q Consensus 75 Ip-------nTv~~----~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~ 142 (238)
+| |++.. .++.+.+.|+|.+.+.-.| +--....+..++.+...+-...-|+ +++.++.+--
T Consensus 89 ~pivlM~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~liaPtt-~~eRi~~i~~------ 161 (253)
T PRK13136 89 IPIILFTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLISPST-TQERLKKINE------ 161 (253)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHH------
T ss_conf 888998651799997999999999749872006789977769999999975887125526899-8899999996------
Q ss_pred HHHHHHHHHHHCCCCCCCC--C---CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECC
Q ss_conf 7654454211024431113--4---10344554420244035510113578657984003698999--965998999985
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVC--S---PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSR 215 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~--s---~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR 215 (238)
...-+.-.....|+-|.-. + ...++++|+.. +-.+ +-|.|.. ||+++ +...||-+|||.
T Consensus 162 ~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv--~vGFGIs-----------~~e~v~~~~~~ADGvIVGS 227 (253)
T PRK13136 162 HGEGMLYYVCRPGTTGVRATLPENFPAKMNQIKSMT-SLPI--VTGFGIA-----------NRKMAAQALQYADGFVIGS 227 (253)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCE--EEECCCC-----------CHHHHHHHHHHCCEEEECH
T ss_conf 089819998555236876446388999999999726-9986--9971549-----------9999999982299999858
Q ss_pred HHCC---CCCHHHHHHHHHHHHH
Q ss_conf 3308---8888999999999866
Q gi|254780453|r 216 PIVR---AADPVSAAQEFQRAIS 235 (238)
Q Consensus 216 ~I~~---a~dP~~aa~~i~~~i~ 235 (238)
+|.+ ..-+.++..++-++|+
T Consensus 228 aiV~~i~e~~~~~~~~~~~~~l~ 250 (253)
T PRK13136 228 LFVKAIAEGISKNALTRLAQSLN 250 (253)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999986499889999998708
No 76
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.54 E-value=0.076 Score=32.35 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH
Q ss_conf 97411231157898899960799899999999738-85228998689984255899999985154667877640424678
Q gi|254780453|r 1 MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV 79 (238)
Q Consensus 1 ~~~~~~~~~~kk~~livALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv 79 (238)
|+.--+++.-++++++-=+-..+.+++..+++.+- .-+..+++-+ -.....+.++++.++...=+-|+-++ .| ||
T Consensus 4 ~~~~~vl~~l~~~~iipVvr~~~~e~a~~~a~aL~~gGi~~iEiTl--rt~~a~~~i~~l~~~~~~~~p~~~iG-aG-TV 79 (223)
T PRK07114 4 FDRIAVLNAMKSTGMVPVFYHSDIEVAKKVVKACYDGGVRAFEFTN--RGDFAHEVFGELVKYAAKECPEMILG-VG-SI 79 (223)
T ss_pred CCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEE-EE-CC
T ss_conf 6599999999879979999828999999999999988998899958--89658999999999998668980896-55-18
Q ss_pred --HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf --987765215675089972460467777653023553-10466641477768876520121048876544542110244
Q gi|254780453|r 80 --TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGM 156 (238)
Q Consensus 80 --~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~ 156 (238)
...++.+.+.|++++. +|+.-.+..+.+++.+. .+=|| +|...-..-.+.|+. .+ ++. .+..
T Consensus 80 l~~~~~~~a~~aGA~FiV---SP~~~~~v~~~~~~~~~~~iPGv--~TptEi~~A~~~G~~-----~v-K~F----Pa~~ 144 (223)
T PRK07114 80 VDAATAALYIQLGANFVV---GPLFNEDIAKVCNRRKIPYSPGC--GSVSEIGFAEELGCE-----IV-KIF----PGDV 144 (223)
T ss_pred CCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCC-----EE-EEC----CCCC
T ss_conf 899999999985998999---99999999999998399753731--999999999987999-----79-889----7323
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC-----CCCCHHHHHHHHH
Q ss_conf 31113410344554420244035510113578657984003698999965998999985330-----8888899999999
Q gi|254780453|r 157 GGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV-----RAADPVSAAQEFQ 231 (238)
Q Consensus 157 ~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~-----~a~dP~~aa~~i~ 231 (238)
- .|.-++.++.-++.-.+.-|.||.+..+ +..+-+++|+..+.+|..+. .++|-.+-.+..+
T Consensus 145 ~----G~~~lkal~~p~p~~~~~PtGGV~ps~~---------N~~~~l~ag~~~vG~GS~l~~~~~i~~~d~~~I~~~a~ 211 (223)
T PRK07114 145 Y----GPEFVKAIKGPMPWTSIMPTGGVEPTEE---------NLKSWFKAGATCVGMGSKLFPKDKLAAKDWAGITKKVK 211 (223)
T ss_pred C----CHHHHHHHHCCCCCCCEEECCCCCCCHH---------HHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHH
T ss_conf 5----9999999846499996887999887355---------09999968997999884638999986589999999999
Q ss_pred HHHHH
Q ss_conf 98665
Q gi|254780453|r 232 RAISL 236 (238)
Q Consensus 232 ~~i~~ 236 (238)
+.+++
T Consensus 212 ~~~~~ 216 (223)
T PRK07114 212 EALDI 216 (223)
T ss_pred HHHHH
T ss_conf 99999
No 77
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.012 Score=37.49 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=82.3
Q ss_pred HHHHHCCCCCEEEEEECCC------HHHHHHHH---HHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 7765215675089972460------46777765---30235531046664147776887652012104887654454211
Q gi|254780453|r 82 AIEHIANMGVAMLTVHAYP------QTMRSAVS---VVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQAR 152 (238)
Q Consensus 82 ~v~~~~~~g~d~iTvH~~~------~~l~~~~~---~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~ 152 (238)
.++.+..+|+|.+.+|..- ++++...+ .+.+.+.-++.-... - .....+- +. .-.+.+...++++.
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~Yp--R-g~~~~~~-~~-~d~~~v~~aaRlaa 176 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYP--R-GPAIKDE-YH-RDADLVGYAARLAA 176 (265)
T ss_pred EHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC--C-CCCCCCC-CC-CCHHHHHHHHHHHH
T ss_conf 098897478747999996687625899999999999998709964998813--5-8776544-43-36899999999999
Q ss_pred HCCCCCCC-----CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHH
Q ss_conf 02443111-----3410344554420244035510113578657984003698999965998999985330888889999
Q gi|254780453|r 153 DIGMGGIV-----CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAA 227 (238)
Q Consensus 153 ~~g~~GvV-----~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa 227 (238)
+.|.| +| -+++.-+++-+-++ -.+++..|=+......-.|+ -.+|++.||--+++||-|.++++|...+
T Consensus 177 elGAD-IiK~~ytg~~e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~----~~~ai~aGa~G~~~GRNifQ~~~p~am~ 250 (265)
T COG1830 177 ELGAD-IIKTKYTGDPESFRRVVAACG-VPVVIAGGPKTETEREFLEM----VTAAIEAGAMGVAVGRNIFQHEDPEAMV 250 (265)
T ss_pred HHCCC-EEEECCCCCHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHH----HHHHHHCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 86577-686159998478999997189-98798479888974999999----9999983573033310332468869999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780453|r 228 QEFQRAI 234 (238)
Q Consensus 228 ~~i~~~i 234 (238)
+.++.-+
T Consensus 251 ~Ai~~Iv 257 (265)
T COG1830 251 KAIQAIV 257 (265)
T ss_pred HHHHHHH
T ss_conf 9999994
No 78
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.33 E-value=0.0042 Score=40.50 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHH
Q ss_conf 341034455442024403551011357865798400369899996599899998533088888999999
Q gi|254780453|r 161 CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 161 ~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.||.-++.+|+.+++-.+++-.|||-.. +.+++.++|||+||||-.|++ ||.++.+.
T Consensus 171 v~~e~V~~v~~~l~~~~LivGGGIrs~e----------~a~~~~~aGAD~IVvGn~ie~--d~~~~l~t 227 (229)
T PRK04169 171 VPPEMVKAVKKALTDTPLIVGGGIRSPE----------QAREMAKAGADTIVVGTIIEE--DIEKALET 227 (229)
T ss_pred CCHHHHHHHHHHCCCCCEEEECCCCCHH----------HHHHHHHCCCCEEEECCCEEC--CHHHHHHH
T ss_conf 8999999999737898789928969999----------999999769999998862010--79999864
No 79
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.24 E-value=0.011 Score=37.78 Aligned_cols=76 Identities=29% Similarity=0.400 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 88765445421102443-------11134103445544202440355101135786579840036989999659989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMG-------GIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~-------GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
.+.+...+..|+..|+. |--.+|.-++.+|+.+++-.+++-.|||-.. +.+++.++|||+|||
T Consensus 134 ~~~~~ayAlaae~lg~~~iYLEgSGa~v~~e~V~~vk~~l~~~~LivGGGIrs~e----------~a~~~~~AgAD~IVv 203 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGE----------QAKEMAEAGADTIVV 203 (219)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHH----------HHHHHHHCCCCEEEE
T ss_conf 8999999999998299389995689979999999999846797099928979999----------999999869999998
Q ss_pred CCHHCCCCCHHHHHH
Q ss_conf 853308888899999
Q gi|254780453|r 214 SRPIVRAADPVSAAQ 228 (238)
Q Consensus 214 GR~I~~a~dP~~aa~ 228 (238)
|-.|++. |..+.+
T Consensus 204 Gn~iee~--~~~~l~ 216 (219)
T cd02812 204 GNIVEED--PNAALE 216 (219)
T ss_pred CCCEEEC--HHHHHH
T ss_conf 8722406--899976
No 80
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.064 Score=32.81 Aligned_cols=183 Identities=22% Similarity=0.363 Sum_probs=101.4
Q ss_pred CCCCCCEEEEEECCC-----HHH---HHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHH--HCC---
Q ss_conf 157898899960799-----899---999999738852289986899842558999999851-546678776--404---
Q gi|254780453|r 9 VDEKKRLVVGLDLPT-----VKE---AERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD-GKSVFLDMK--LFD--- 74 (238)
Q Consensus 9 ~~kk~~livALD~~~-----~~e---~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K--~~D--- 74 (238)
++.|..|||+|--.. ..+ +...+-.-++- .++.++ |.+=|+.+++. +.|||-=.| +-|
T Consensus 11 ~~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGA-vgiR~~-------gv~dIkai~~~v~vPIIGIiKrd~~~s~v 82 (229)
T COG3010 11 EQLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQGGA-VGIRIE-------GVEDIKAIRAVVDVPIIGIIKRDYPDSPV 82 (229)
T ss_pred HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEC-------CHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9845986999405999987656599999999985786-268612-------06569999861788768888058999993
Q ss_pred -HHHHHHHHHHHHCCCCCEEEEEECC----C-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -2467898776521567508997246----0-467777653023553104666414777688765201210488765445
Q gi|254780453|r 75 -IGSSVTAAIEHIANMGVAMLTVHAY----P-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 75 -IpnTv~~~v~~~~~~g~d~iTvH~~----~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
|--|+ +.+..+.+.|++.+-+-+. | +.+.+.+...+..+..+++- .+++++.
T Consensus 83 ~ITptl-keVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD--~St~ee~------------------- 140 (229)
T COG3010 83 RITPTL-KEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMAD--CSTFEEG------------------- 140 (229)
T ss_pred EECCCH-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHH-------------------
T ss_conf 556618-999999977990999625568798435999999733579478732--5988888-------------------
Q ss_pred HHHHHCCCC-------CCCC---CC--HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEE
Q ss_conf 421102443-------1113---41--0344554420244035510113578657984003698999---9659989999
Q gi|254780453|r 149 VQARDIGMG-------GIVC---SP--QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGASHIVV 213 (238)
Q Consensus 149 ~~a~~~g~~-------GvV~---s~--~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVV 213 (238)
..|.+.|+| |..- .| .+...+|+... +|++.-... ||.||..| ++.||+.+||
T Consensus 141 l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-------~~~~vIAEG-----r~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 141 LNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-------AGCRVIAEG-----RYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH-------CCCEEEEEC-----CCCCHHHHHHHHHHCCEEEEE
T ss_conf 88997399678224201468998778972899999986-------799399517-----879999999999718808998
Q ss_pred CCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 85330888889999999998665
Q gi|254780453|r 214 SRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 214 GR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
|.+||+ |.+-.+.|.++++.
T Consensus 209 GsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 209 GSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred CCCCCC---HHHHHHHHHHHHHC
T ss_conf 743378---79999999999842
No 81
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.20 E-value=0.039 Score=34.25 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=92.9
Q ss_pred CCCCCCCEEEEEECC-CHHHHHHHHHH-HCCCCCEEEECHH-----HHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHH
Q ss_conf 115789889996079-98999999997-3885228998689-----9842558999999851546678776404246789
Q gi|254780453|r 8 DVDEKKRLVVGLDLP-TVKEAERIVSI-LSDTVSFYKIGYH-----LSFSGGLELARDLISDGKSVFLDMKLFDIGSSVT 80 (238)
Q Consensus 8 ~~~kk~~livALD~~-~~~e~l~l~~~-l~~~i~~iKig~~-----l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~ 80 (238)
.|.+-..|.+--|.. +.++.++.+++ +...+.++-+=.. -+.....++....++++.+++..
T Consensus 2 ~~~~~~glYlIT~~~~~~~~~~~~~~~~l~~Gv~~vQlR~K~~~~~~~~~~a~~l~~i~~~~~~~liIN----------- 70 (210)
T PRK00043 2 FMMKLLGLYLITDSRDSTGDLLEVVEAALAGGVTLVQLREKGADARERLELARALKALCRRYGVPLIVN----------- 70 (210)
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC-----------
T ss_conf 865308089991985345549999999998699999992699899999999999999999809959976-----------
Q ss_pred HHHHHHCCCCCEEEEEECC-CHH-HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8776521567508997246-046-77776530235531046664147776887652012104887654454211024431
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY-PQT-MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG 158 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~-~~~-l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G 158 (238)
..+.-+.++++|. ||.. .++ ...+.+... .-.++|++. .+.++..+. .+.|+|-
T Consensus 71 d~~~lA~~~~adG--vHLgq~d~~~~~~r~~l~--~~~iiG~S~---h~~~e~~~A-----------------~~~gaDY 126 (210)
T PRK00043 71 DRVDLALAVGADG--VHLGQDDLPVADARAILG--PDAIIGVST---HTLEEAAAA-----------------AAAGADY 126 (210)
T ss_pred CHHHHHHHHCCCE--EECCCCCCCHHHHHHHCC--CCCEEEEEC---CCHHHHHHH-----------------HHHCCCE
T ss_conf 8899998719998--976988768999997519--887899847---999999999-----------------8828983
Q ss_pred CC----------------CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCC
Q ss_conf 11----------------34103445544202440355101135786579840036989999659989999853308888
Q gi|254780453|r 159 IV----------------CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 159 vV----------------~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~d 222 (238)
+. .+...++.+++.. +-.++.-.||.++ +..+..+.|+|.+-|-++|.+|+|
T Consensus 127 i~~Gpvf~T~tK~~~~~~~g~~~l~~~~~~~-~iPvvAIGGI~~~-----------ni~~~~~~Ga~giAvis~I~~a~d 194 (210)
T PRK00043 127 VGVGPIFPTPTKKDAKPAVGLELLREAREAI-DIPIVAIGGITPE-----------NAAEVLEAGADGVAVVSAITAAED 194 (210)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCHH-----------HHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf 8874521479888887778999999999847-9998998088999-----------999999809999997089776999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999986651
Q gi|254780453|r 223 PVSAAQEFQRAISLI 237 (238)
Q Consensus 223 P~~aa~~i~~~i~~~ 237 (238)
|.++++++++.+...
T Consensus 195 p~~a~~~l~~~~~~~ 209 (210)
T PRK00043 195 PAAAARALLAAFRAA 209 (210)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999974
No 82
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.05 E-value=0.071 Score=32.54 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH
Q ss_conf 9741123115789889996079989999999973-885228998689984255899999985154667877640424678
Q gi|254780453|r 1 MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV 79 (238)
Q Consensus 1 ~~~~~~~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv 79 (238)
|+.--+++.-++++|+.=+=..+.++++.+++.+ ..-+..++|-+. .....+.++++++.... .-|+.++ .| ||
T Consensus 1 M~k~~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~--tp~a~~~i~~l~~~~~~-~p~~~iG-aG-TV 75 (209)
T PRK06552 1 MKKSEILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYT--NPFASEVIKELVERYKD-DPEVLIG-AG-TV 75 (209)
T ss_pred CCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHHCC-CCCEEEE-EE-CC
T ss_conf 98899999999799799997289999999999999879988999678--97599999999998177-9981898-87-27
Q ss_pred --HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf --987765215675089972460467777653023553-10466641477768876520121048876544542110244
Q gi|254780453|r 80 --TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGM 156 (238)
Q Consensus 80 --~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~ 156 (238)
...++.+.+.|++++- +|+.-.+..+.+++.+. .+-|+ +|. .++. .|.+.|+
T Consensus 76 ~~~e~~~~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPG~--~Tp---sEi~-----------------~A~~~Ga 130 (209)
T PRK06552 76 LDAVTARQAILAGAQFIV---SPSFNRETAKICNRYQIPYLPGC--MTV---TEIV-----------------TALEAGV 130 (209)
T ss_pred CCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCC--CCH---HHHH-----------------HHHHCCC
T ss_conf 489999999985998897---69998999999998599641797--999---9999-----------------9998699
Q ss_pred CCC------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 311------134103445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 157 GGI------VCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 157 ~Gv------V~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
+-+ ...|.-++.++.-++.-.++-|.||.+. +..+-+++|+..+=||...++
T Consensus 131 ~~vKlFPA~~~G~~yikal~~p~p~~~~~ptGGV~~~-----------N~~~~l~aG~~~vgvGs~l~~ 188 (209)
T PRK06552 131 DIVKLFPGSTVGPSFISAIKGPLPQVNIMVTGGVSLD-----------NVKDWFAAGADAVGIGGELNK 188 (209)
T ss_pred CEEEECCHHHCCHHHHHHHHCCCCCCCEEECCCCCHH-----------HHHHHHHCCCCEEEECHHHCC
T ss_conf 9588583332489999998664899928863899988-----------899999879988998657708
No 83
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.96 E-value=0.049 Score=33.58 Aligned_cols=58 Identities=33% Similarity=0.462 Sum_probs=43.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 4554420244035510113578657984003698999965998999985330888889999999998665
Q gi|254780453|r 167 RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 167 ~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
+.+++.. +-.++.-.||.++ +..+.++.|+|.+-|-|+|+.++||..+++++++.+..
T Consensus 151 ~~~~~~~-~iP~vAIGGi~~~-----------nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 151 REIRELV-NIPVVAIGGINLE-----------NVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred HHHHHHC-CCCEEEECCCCHH-----------HHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999827-9998998488999-----------99999982987697266866079889999999999874
No 84
>PRK13120 consensus
Probab=95.95 E-value=0.15 Score=30.50 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=102.6
Q ss_pred EEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHH--CCCHHHHH----HHHHHCH---HHH---HHHHH--CCHH-----
Q ss_conf 99607998999999997388-5228998689984--25589999----9985154---667---87764--0424-----
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSF--SGGLELAR----DLISDGK---SVF---LDMKL--FDIG----- 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~--~~G~~~i~----~l~k~~~---~If---~D~K~--~DIp----- 76 (238)
+-.-+++.+..+++++.+.. .++++++|.||-. ..|+-+-+ -|+ .|. .+| .+++- .++|
T Consensus 27 itaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~-~G~~l~~vl~~v~~~r~~~~~~PivlM~ 105 (285)
T PRK13120 27 IAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIA-QGVGLRRVLELVADFRRDDSVTPVVLMG 105 (285)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 578589989999999999976999999789878745668999999999997-6998446999999987348988889861
Q ss_pred --HHH-----HHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf --678-----987765215675089972460-467777653023553104666414777688765201210488765445
Q gi|254780453|r 77 --SSV-----TAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 77 --nTv-----~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
|++ ...++.+.+.|+|.+.|.-.| +--....+..++.+..++-...-|+.+ +.+..+.-. ..-+.
T Consensus 106 Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~gi~~I~LiaPtT~~-eRi~~I~~~------s~GFv 178 (285)
T PRK13120 106 YANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTSTE-ARIEAIGRV------ARGYV 178 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHH------CCCCE
T ss_conf 05499998799999999983987796479997999999999996699658995799989-999999950------89818
Q ss_pred HHHHHCCCCCCCC-CC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCC--
Q ss_conf 4211024431113-41----0344554420244035510113578657984003698999--9659989999853308--
Q gi|254780453|r 149 VQARDIGMGGIVC-SP----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVR-- 219 (238)
Q Consensus 149 ~~a~~~g~~GvV~-s~----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~-- 219 (238)
-.....|+-|.=. .+ ..++.+|+.. +-.+.+ |-|.. ||+++ +...||-+|||.+|.+
T Consensus 179 Y~VS~~GVTG~~~~~~~~l~~~i~~ik~~t-~~Pv~v--GFGIs-----------~~e~v~~~~~~ADGvIVGSAiVk~I 244 (285)
T PRK13120 179 YYVSLKGVTGAGSLDTDDVARKLALIRRHV-HIPVGV--GFGIR-----------DAASAQRIAAHADAVVIGSKLIETM 244 (285)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEE--EECCC-----------CHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 998656546887556688999999999726-997599--96259-----------8999999970299999878999999
Q ss_pred --CCC----------HHHHHHHHHHHHH
Q ss_conf --888----------8999999999866
Q gi|254780453|r 220 --AAD----------PVSAAQEFQRAIS 235 (238)
Q Consensus 220 --a~d----------P~~aa~~i~~~i~ 235 (238)
+.+ ...++.+|..+++
T Consensus 245 ee~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (285)
T PRK13120 245 EQAGAQAGADQKNEAAIAAAQQWLHTIR 272 (285)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9707545655568899999999999999
No 85
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.91 E-value=0.016 Score=36.78 Aligned_cols=181 Identities=22% Similarity=0.337 Sum_probs=93.6
Q ss_pred EEEECCCHHHHHHHHHHHCCCC-CEE-EECHHHHHCCC------HHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9960799899999999738852-289-98689984255------8999999851-5466787764042467898776521
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTV-SFY-KIGYHLSFSGG------LELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i-~~i-Kig~~l~~~~G------~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
|=+|+.+.+++ +++++-+--. -.+ ++-.+.-...| ++.|+++.+. -.|+++- .-||+.++..+. .
T Consensus 11 VIMDV~n~eQA-~IAE~AGAvaVMaLervPadiR~~GGVaRMsdp~~I~eI~~aVsIPVMAK---~RIGHfvEAqiL--e 84 (283)
T cd04727 11 VIMDVTNAEQA-RIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAK---VRIGHFVEAQIL--E 84 (283)
T ss_pred EEEEECCHHHH-HHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEE---ECCCHHHHHHHH--H
T ss_conf 78883789999-99987175378642348787874479001589899999998522200234---202217999999--9
Q ss_pred CCCCEEEE-----------------------EEC---CCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHH
Q ss_conf 56750899-----------------------724---6046777765302355310466641477768876520121048
Q gi|254780453|r 88 NMGVAMLT-----------------------VHA---YPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDIS 141 (238)
Q Consensus 88 ~~g~d~iT-----------------------vH~---~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~ 141 (238)
.+|+||+- |++ .++.++...+.+--..++- |. -+.++.
T Consensus 85 algVD~IDESEVLTpAD~~~HI~K~~F~vPFVCGarnLgEAlRRI~EGAaMIRTKG---------------Ea-GTGnVv 148 (283)
T cd04727 85 ALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKG---------------EA-GTGNVV 148 (283)
T ss_pred HHCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCCCCHHHHHHHHCCHHCCCCCC---------------CC-CCCCHH
T ss_conf 95888235223577775320443103777744068981899988862120167779---------------68-856699
Q ss_pred HHHHH------------------HHHHHHHCCCCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH
Q ss_conf 87654------------------4542110244311134103-4455442024403551011357865798400369899
Q gi|254780453|r 142 DMVRM------------------RAVQARDIGMGGIVCSPQE-VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET 202 (238)
Q Consensus 142 ~~v~~------------------~a~~a~~~g~~GvV~s~~e-i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~ 202 (238)
+.|++ +...|++.+. |.| ++++++. |. + |=+.+.-+. +.||.+
T Consensus 149 eAVrH~R~i~~eI~~l~~~~~~el~~~Ak~~~a------p~elv~~v~~~-gr--L---PVvnFaAGG------iATPAD 210 (283)
T cd04727 149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQA------PYELVKETAKL-GR--L---PVVNFAAGG------VATPAD 210 (283)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC------CHHHHHHHHHH-CC--C---CEEEECCCC------CCCHHH
T ss_conf 999999999999999977999999999998677------58999999997-89--7---636642678------588377
Q ss_pred H---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9---9659989999853308888899999999986651
Q gi|254780453|r 203 A---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 203 A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
| ...|+|-+.||.+|.+|+||.+.|+.|.+...+-
T Consensus 211 AALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy 248 (283)
T cd04727 211 AALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999728987887765457899999999999998465
No 86
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.85 E-value=0.026 Score=35.39 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 454211024431113410-------------34455442024403-5510113578657984003698999965998999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
-+..|.+.|++|+|.|-| -+..+++.+++++- ++-.|||- |.| .-.|+..|||++-
T Consensus 185 DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~-G~D---------v~KAlaLGA~~V~ 254 (299)
T cd02809 185 DALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR-GTD---------VLKALALGADAVL 254 (299)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-HHH---------HHHHHHCCCCEEE
T ss_conf 999999859988997288733368887789999999998546728997188475-368---------9999976998898
Q ss_pred ECCHHCCC--CC----HHHHHHHHHHHHH
Q ss_conf 98533088--88----8999999999866
Q gi|254780453|r 213 VSRPIVRA--AD----PVSAAQEFQRAIS 235 (238)
Q Consensus 213 VGR~I~~a--~d----P~~aa~~i~~~i~ 235 (238)
||||..-+ .. ...+.+.++++|.
T Consensus 255 iGRp~l~~l~~~G~~Gv~~~~~~l~~El~ 283 (299)
T cd02809 255 IGRPFLYGLAAGGEAGVAHVLEILRDELE 283 (299)
T ss_pred ECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 77899999885449999999999999999
No 87
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=95.79 E-value=0.016 Score=36.74 Aligned_cols=181 Identities=21% Similarity=0.337 Sum_probs=96.0
Q ss_pred EEEECCCHHHHHHHHHHHCCCCC-EE-EECHHHHHCCC------HHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 99607998999999997388522-89-98689984255------8999999851-5466787764042467898776521
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVS-FY-KIGYHLSFSGG------LELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~-~i-Kig~~l~~~~G------~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
|=+|+.+.+++ +++++-+--.. .+ ++-.+.-...| ++.|+++.+. -.|+++- .-||+.++..+. .
T Consensus 20 VIMDV~n~eQA-~IAE~AGAvaVMaLervPadiR~~GGVaRMsdp~~I~eI~~aVsIPVMAK---~RIGHfvEAqiL--e 93 (293)
T PRK04180 20 VIMDVVNAEQA-KIAEEAGAVAVMALERVPADIRAAGGVARMADPKIIEEIMDAVSIPVMAK---ARIGHFVEAQIL--E 93 (293)
T ss_pred EEEEECCHHHH-HHHHHCCCEEEEEECCCCHHHHHCCCEEECCCHHHHHHHHHHCCCHHHHH---HCCCHHHHHHHH--H
T ss_conf 78984789999-99987376489875358587872589101599899999998646323221---100129999999--9
Q ss_pred CCCCEEEE-----------------------EEC---CCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHH
Q ss_conf 56750899-----------------------724---6046777765302355310466641477768876520121048
Q gi|254780453|r 88 NMGVAMLT-----------------------VHA---YPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDIS 141 (238)
Q Consensus 88 ~~g~d~iT-----------------------vH~---~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~ 141 (238)
.+|+||+- |++ .++.++...+.+--..++ | |. -+.++.
T Consensus 94 algVD~IDESEVLTpAD~~~HI~K~~F~vPFVCGarnLgEAlRRI~EGAaMIRTK--G-------------Ea-GTGnVv 157 (293)
T PRK04180 94 ALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIGEGAAMIRTK--G-------------EA-GTGNVV 157 (293)
T ss_pred HHCCCEECCCCCCCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHCHHHHCCC--C-------------CC-CCCCHH
T ss_conf 9588824531126656554215400277762205776589988775022340035--7-------------67-877499
Q ss_pred HHHHHH------------------HHHHHHCCCCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH
Q ss_conf 876544------------------542110244311134103-4455442024403551011357865798400369899
Q gi|254780453|r 142 DMVRMR------------------AVQARDIGMGGIVCSPQE-VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET 202 (238)
Q Consensus 142 ~~v~~~------------------a~~a~~~g~~GvV~s~~e-i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~ 202 (238)
+.|++. ...|++.+. |.| +.++++. |. + |=+++.-+. +.||-+
T Consensus 158 eAVrH~R~i~~eI~~l~~~~~~el~~~Ak~~~a------p~elv~~v~~~-gr--L---PVvnFaAGG------iATPAD 219 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELMTAAKELGA------PYELVKEVARL-GR--L---PVVNFAAGG------IATPAD 219 (293)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC------CHHHHHHHHHH-CC--C---CEEEECCCC------CCCCHH
T ss_conf 999999999999999976999999999998477------68999999984-88--7---625532577------578056
Q ss_pred H---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9---9659989999853308888899999999986651
Q gi|254780453|r 203 A---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 203 A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
| ...|+|-+.||.+|.+|+||.+.|+.|.+...+-
T Consensus 220 AALmMqLG~dGVFVGSGIFKS~dP~~rA~AIV~A~thy 257 (293)
T PRK04180 220 AALMMQLGADGVFVGSGIFKSGNPEKRAKAIVEATTHY 257 (293)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99998717874675454346799889999999998523
No 88
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.68 E-value=0.2 Score=29.59 Aligned_cols=183 Identities=17% Similarity=0.202 Sum_probs=109.4
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHH-HHHHHHHCCHH-HHH--HHH
Q ss_conf 115789889996079989999999973-8852289986899842558999999851546-67877640424-678--987
Q gi|254780453|r 8 DVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKS-VFLDMKLFDIG-SSV--TAA 82 (238)
Q Consensus 8 ~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~-If~D~K~~DIp-nTv--~~~ 82 (238)
+.-.+.+|+--+-..+.++++++++.+ ..-+..+++-+. +....+.|+++++.... +. || -|| ...
T Consensus 5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~--tp~a~~~I~~l~~~~~~~~~-------iGAGTVlt~e~ 75 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLN--SPDPFDSIAALVKALGDDAL-------IGAGTVLSPEQ 75 (206)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHCCCCEE-------EEEEECCCHHH
T ss_conf 9998599799995899999999999999869988999179--97699999999996798659-------98620467999
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 765215675089972460467777653023553-10466641477768876520121048876544542110244311--
Q gi|254780453|r 83 IEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI-- 159 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv-- 159 (238)
++.+.+.|++++- +|+.-.+..+.+++.+. .+-|+ +|. .+.. .|.+.|++-+
T Consensus 76 ~~~ai~aGA~FiV---SP~~~~~vi~~a~~~~i~~iPG~--~TP---sEi~-----------------~A~~~Ga~~vKl 130 (206)
T PRK09140 76 VDRLADAGGRLIV---TPNIDPEVIRRAVAYGMTVMPGV--ATP---TEAF-----------------AALRAGADALKL 130 (206)
T ss_pred HHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCCCCCC--CCH---HHHH-----------------HHHHCCCCEEEE
T ss_conf 9999985999999---99998999999998299652785--999---9999-----------------999859871565
Q ss_pred ----CCCCHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC----CHHHHHHHH
Q ss_conf ----13410344554420244035-510113578657984003698999965998999985330888----889999999
Q gi|254780453|r 160 ----VCSPQEVRMVREIVGHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA----DPVSAAQEF 230 (238)
Q Consensus 160 ----V~s~~ei~~ir~~~~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~----dP~~aa~~i 230 (238)
...|.-++.+|..++++..+ =|.||.+. +..+-+++|+..+=+|..+++.. ...+.|++|
T Consensus 131 FPA~~~Gp~~ikal~~p~P~~~~~~ptGGV~~~-----------N~~~~l~aGa~avG~Gs~L~~~~~~~~~i~~~a~~f 199 (206)
T PRK09140 131 FPASQLGPAGIKALRAVLPPDVPVFAVGGVTPE-----------NLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAF 199 (206)
T ss_pred CCHHCCCHHHHHHHHCCCCCCCEEEECCCCCHH-----------HHHHHHHCCCCEEEECHHCCCCCCCHHHHHHHHHHH
T ss_conf 751105999999986438999989953798888-----------899999869919996065159999999999999999
Q ss_pred HHHHH
Q ss_conf 99866
Q gi|254780453|r 231 QRAIS 235 (238)
Q Consensus 231 ~~~i~ 235 (238)
.+.+.
T Consensus 200 v~a~~ 204 (206)
T PRK09140 200 VAAYR 204 (206)
T ss_pred HHHHH
T ss_conf 99997
No 89
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.60 E-value=0.022 Score=35.78 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=35.5
Q ss_pred ECCHHHH---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 3698999---965998999985330888889999999998665
Q gi|254780453|r 197 FATPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 197 ~~tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
+.||.+| ...|||-+.||.+|.+|+||.+-|+.|.+.-.+
T Consensus 217 vATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~ 259 (296)
T COG0214 217 VATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTH 259 (296)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 6881679999981898478656433789989999999999971
No 90
>PRK07695 transcriptional regulator TenI; Provisional
Probab=95.46 E-value=0.038 Score=34.32 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=88.5
Q ss_pred CCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHHHC-CCHHHHHHHHHHCHH---HHHHHHHCCHHHHHHHHHHHH
Q ss_conf 898899960-799899999999738852289986899842-558999999851546---678776404246789877652
Q gi|254780453|r 12 KKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLSFS-GGLELARDLISDGKS---VFLDMKLFDIGSSVTAAIEHI 86 (238)
Q Consensus 12 k~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~~~-~G~~~i~~l~k~~~~---If~D~K~~DIpnTv~~~v~~~ 86 (238)
|++|++==| ....++..++...+...+.++-+=-.-... .=....+.+++...+ +|. +| -+.-+
T Consensus 1 ~~~L~~IT~~~~~~~~~~~v~~al~~Gv~~iQlR~K~~s~~e~~~~~~~l~~~~~~~~~lII----ND-------~~dlA 69 (202)
T PRK07695 1 KNELHVISNGHMSFEELVAVAMQIESEVDYIHIREREKSAKELYEGVESLLKKGVPASKLII----ND-------RVDIA 69 (202)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE----EC-------CHHHH
T ss_conf 96389997999997899999999987999999889997999999999999984899998999----79-------19999
Q ss_pred CCCCCEEEEEECCC-H-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC----
Q ss_conf 15675089972460-4-67777653023553104666414777688765201210488765445421102443111----
Q gi|254780453|r 87 ANMGVAMLTVHAYP-Q-TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV---- 160 (238)
Q Consensus 87 ~~~g~d~iTvH~~~-~-~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV---- 160 (238)
...++|.+ |... + ....+.+.. +-.++|+|.- +.++..+ |...|+|-+.
T Consensus 70 ~~~~adGV--HLGq~D~~~~~~R~~~---~~~~IG~S~h---~~~e~~~-----------------a~~~gaDYi~~Gpi 124 (202)
T PRK07695 70 LLLNIHRV--QLGYRSFDVKSVREKF---PYLHVGYSVH---SLEEAIQ-----------------AEKNGADYVVYGHV 124 (202)
T ss_pred HHCCCCEE--EECHHHCCHHHHHHHC---CCCEEEEECC---CHHHHHH-----------------HHHCCCCEEEECCC
T ss_conf 88499989--2182121999999877---9989999579---9999999-----------------97769996997254
Q ss_pred ----C----CC---HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHH
Q ss_conf ----3----41---034455442024403551011357865798400369899996599899998533088888999999
Q gi|254780453|r 161 ----C----SP---QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 161 ----~----s~---~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~ 229 (238)
| +| ..++.+.+.. +-.++--.||... +..+.++.|+|.+-|-++|+.|+||.+++++
T Consensus 125 f~T~tK~~~~~~G~~~l~~~~~~~-~iPvvAIGGI~~~-----------ni~~v~~~Ga~giAvis~I~~a~dp~~~~~~ 192 (202)
T PRK07695 125 FPTDCKKGVPARGLEELSEIARAL-SIPVIAIGGITPE-----------NTRDVLAAGVSGIAVMSGIFSSSNPYSKAKR 192 (202)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCHH-----------HHHHHHHCCCCEEEEHHHHHCCCCHHHHHHH
T ss_conf 126888898878999999999867-9998998698999-----------9999998299999971897769999999999
Q ss_pred HHHHHHH
Q ss_conf 9998665
Q gi|254780453|r 230 FQRAISL 236 (238)
Q Consensus 230 i~~~i~~ 236 (238)
+++.|+.
T Consensus 193 l~~~i~~ 199 (202)
T PRK07695 193 YKESIRK 199 (202)
T ss_pred HHHHHHH
T ss_conf 9999998
No 91
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=95.45 E-value=0.039 Score=34.22 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=51.8
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 454211024431113410-------------3445544202440-35510113578657984003698999965998999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
-+..+.+.|++|++.|.| -+..+++.+++++ +++..|||- |.+ .-.|+..|||++-
T Consensus 182 DA~~a~~~Gv~~I~VSnHGGRqlD~~~~t~~~L~eI~~~v~~~~~i~~DGGIR~-G~D---------V~KAlALGA~~V~ 251 (301)
T pfam01070 182 DAKRAVEAGVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRR-GTD---------VLKALALGADAVL 251 (301)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-CHH---------HHHHHHCCCCEEE
T ss_conf 999999859999996499854468886799999999998567748996387476-268---------9999980898665
Q ss_pred ECCHHCCC------CCHHHHHHHHHHHHH
Q ss_conf 98533088------888999999999866
Q gi|254780453|r 213 VSRPIVRA------ADPVSAAQEFQRAIS 235 (238)
Q Consensus 213 VGR~I~~a------~dP~~aa~~i~~~i~ 235 (238)
+|||...+ +--....+.+++++.
T Consensus 252 iGRp~l~ala~~G~~Gv~~~l~~l~~El~ 280 (301)
T pfam01070 252 LGRPFLYGLAAGGEAGVAHALEILRDELE 280 (301)
T ss_pred ECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 56899999996579999999999999999
No 92
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.30 E-value=0.067 Score=32.71 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCCCCCCCCH---------------------------------HHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 4454211024431113410---------------------------------3445544202440355101135786579
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQ---------------------------------EVRMVREIVGHNMVIVTPGIRMLGSATD 192 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~---------------------------------ei~~ir~~~~~~~~~itPGI~~~~~~~~ 192 (238)
+-+..+.+.|++|+++|.+ -+..++...++-.++.+.|||- |-+
T Consensus 193 eda~~l~~~Gv~~IdVSghGGTnf~~IE~~R~~d~~~~~~~~l~dwGi~T~~sL~e~~~~~~~~~iiasGGir~-g~D-- 269 (326)
T cd02811 193 ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN-GLD-- 269 (326)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCC-HHH--
T ss_conf 99999996799999978999975366531015673133788988628556999999997389981998688787-799--
Q ss_pred CCCEECCHHHHHHCCCCEEEECCHHCCC-----CCHHHHHHHHHHHHHH
Q ss_conf 8400369899996599899998533088-----8889999999998665
Q gi|254780453|r 193 GQKRFATPETALKYGASHIVVSRPIVRA-----ADPVSAAQEFQRAISL 236 (238)
Q Consensus 193 dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-----~dP~~aa~~i~~~i~~ 236 (238)
.-.|+..|||.+=+|||+..+ +-..+..+.++++++.
T Consensus 270 -------v~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~~el~~ 311 (326)
T cd02811 270 -------IAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRT 311 (326)
T ss_pred -------HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf -------999999555336527999999854899999999999999999
No 93
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=95.30 E-value=0.026 Score=35.38 Aligned_cols=63 Identities=29% Similarity=0.514 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 454211024431113410-------------344554420244035-510113578657984003698999965998999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
-|..|.+.|++|++.|-| -+..+++.+++++-+ +-.|||- |.| .-.|+..|||++-
T Consensus 266 DA~~A~~~G~dgIiVSNHGGRQLD~apa~i~~LpeI~~aV~~~~~V~~DgGIRr-G~D---------V~KAlALGA~~V~ 335 (383)
T cd03332 266 DARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRT-GAD---------IMKALALGAKAVL 335 (383)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-HHH---------HHHHHHCCCCEEE
T ss_conf 999999759988998078634467883278999999998479984999799786-799---------9999976999898
Q ss_pred ECCHHCC
Q ss_conf 9853308
Q gi|254780453|r 213 VSRPIVR 219 (238)
Q Consensus 213 VGR~I~~ 219 (238)
||||..-
T Consensus 336 iGRp~l~ 342 (383)
T cd03332 336 IGRPYAY 342 (383)
T ss_pred ECHHHHH
T ss_conf 7789999
No 94
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.30 E-value=0.028 Score=35.17 Aligned_cols=61 Identities=33% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 54211024431113410-------------34455442024403-55101135786579840036989999659989999
Q gi|254780453|r 148 AVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 148 a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
+..|.+.|++|+|.|-| -+..+++.++..+- ++=.|||- |.+ .-.|+..|||++-|
T Consensus 235 A~~A~~~G~dgIvVSNHGGRQLD~~p~~i~~LpeI~~av~~~~~V~~DgGIR~-G~D---------V~KALALGA~aV~i 304 (351)
T cd04737 235 ADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR-GEH---------VFKALASGADAVAV 304 (351)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHH---------HHHHHHCCCCEEEE
T ss_conf 99998749988997787512356760478899999998668964997698674-689---------99999769988975
Q ss_pred CCHHC
Q ss_conf 85330
Q gi|254780453|r 214 SRPIV 218 (238)
Q Consensus 214 GR~I~ 218 (238)
|||..
T Consensus 305 GRp~l 309 (351)
T cd04737 305 GRPVL 309 (351)
T ss_pred CHHHH
T ss_conf 78999
No 95
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.29 E-value=0.27 Score=28.75 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=104.4
Q ss_pred EEEECCCHHHHHHHHHH-HCCCCCEEEECHHHHH--CCCHHH----HHHHHH-----HCHHHHHHH--HHCCHH------
Q ss_conf 99607998999999997-3885228998689984--255899----999985-----154667877--640424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSI-LSDTVSFYKIGYHLSF--SGGLEL----ARDLIS-----DGKSVFLDM--KLFDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~-l~~~i~~iKig~~l~~--~~G~~~----i~~l~k-----~~~~If~D~--K~~DIp------ 76 (238)
+-+-.++.+..+++++. ....++++++|.||-. ..|+.+ .+.|+. ..+.++... +-.++|
T Consensus 23 it~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 23 VTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 94889998999999999986798889966888886766889999899999779988999999999986189998899870
Q ss_pred -HH-----HHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -67-----8987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r 77 -SS-----VTAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 -nT-----v~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
|- +...++.+.+.|+|.+.|-=.| +.-....+.+++++...+-...-|+.+ +.+..+- +...-+.-
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~-~rl~~i~------~~a~GFiY 175 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD-ERLKKIA------EAASGFIY 175 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHH------HHCCCCEE
T ss_conf 1188773599999999975998798578986677789999997698679886999998-9999999------74798589
Q ss_pred HHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC--CC
Q ss_conf 2110244311134-----1034455442024403551011357865798400369899996599899998533088--88
Q gi|254780453|r 150 QARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA--AD 222 (238)
Q Consensus 150 ~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a--~d 222 (238)
.....|+-|.=-. ...++++|+.. ...+.+==||+-+. +.+++.+. ||-+|||.+|.+. ++
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e----------~~~~v~~~-ADGVIVGSAiV~~i~~~ 243 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPE----------QAAQVAEA-ADGVIVGSAIVKIIEEG 243 (265)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHH-CCEEEECHHHHHHHHHC
T ss_conf 99666666777653046999999999744-89738744869999----------99999976-88579739999999955
Q ss_pred ----HHHHHHHHHHHHHH
Q ss_conf ----89999999998665
Q gi|254780453|r 223 ----PVSAAQEFQRAISL 236 (238)
Q Consensus 223 ----P~~aa~~i~~~i~~ 236 (238)
..+.++++.++++.
T Consensus 244 ~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 244 LDEEALEELRALVKELKA 261 (265)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 514469999999999998
No 96
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.19 E-value=0.031 Score=34.86 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 454211024431113410-------------34455442024403-5510113578657984003698999965998999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
-+..|.+.|++|+|.|-| -+..+++.++.++- ++=.|||- |.+ .-.|+..|||++-
T Consensus 258 DA~~A~~~G~dgIiVSNHGGRQLD~apa~i~~LpeI~~aV~~~~~V~~DgGiRr-G~D---------V~KALALGA~aV~ 327 (381)
T PRK11197 258 DARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRN-GLD---------VVRMIALGADTVL 327 (381)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-HHH---------HHHHHHCCCCEEE
T ss_conf 999999669988999577632156784489999999998678973999689786-689---------9999976998897
Q ss_pred ECCHHCC
Q ss_conf 9853308
Q gi|254780453|r 213 VSRPIVR 219 (238)
Q Consensus 213 VGR~I~~ 219 (238)
||||..-
T Consensus 328 vGRp~ly 334 (381)
T PRK11197 328 LGRAFVY 334 (381)
T ss_pred ECHHHHH
T ss_conf 6759999
No 97
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.17 E-value=0.3 Score=28.52 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH--
Q ss_conf 41123115789889996079989999999973-885228998689984255899999985154667877640424678--
Q gi|254780453|r 3 AGLIIDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV-- 79 (238)
Q Consensus 3 ~~~~~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-- 79 (238)
+-.+++..++.+|+--+...+.+++.++++.+ ..-+..+++-+. .....+.|+.++++... +.+ -.| ||
T Consensus 5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlr--t~~a~~~I~~l~~~~p~----~~v-GaG-TVl~ 76 (212)
T PRK06015 5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLR--TPAALDAIRAVAAEVEE----AIV-GAG-TILN 76 (212)
T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHCCC----CEE-EEE-ECCC
T ss_conf 999999998799799997799999999999999879988999689--95199999999986999----679-542-1156
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 987765215675089972460467777653023553-1046664147776887652012104887654454211024431
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG 158 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G 158 (238)
...++.+.+.|++|+. +|+.-.+..+.+++.+. .+=||. |. .++ ..|.+.|++-
T Consensus 77 ~e~~~~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---sEi-----------------~~A~~~G~~~ 131 (212)
T PRK06015 77 AKQFEDAAKAGSRFIV---SPGTTQELLAAANDSDVPLLPGAI--TP---SEV-----------------MALREEGYTV 131 (212)
T ss_pred HHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCE
T ss_conf 9999999984998998---589999999999983997737869--99---999-----------------9999879998
Q ss_pred CC-------CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHH-----CCCCCHHHH
Q ss_conf 11-------341034455442024403551011357865798400369899996599899998533-----088888999
Q gi|254780453|r 159 IV-------CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPI-----VRAADPVSA 226 (238)
Q Consensus 159 vV-------~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I-----~~a~dP~~a 226 (238)
+- -.|.-++.++.-++.-.++-|.||.+.+ ..+-++.+.-+.|.|..+ .+++|-.+-
T Consensus 132 vKlFPA~~~gG~~~lkal~~p~p~~~~~ptGGV~~~N-----------~~~yl~~~~v~~vgGs~l~~~~~i~~~dw~~I 200 (212)
T PRK06015 132 LKFFPAEQAGGAAFLKALSSPLAGTFFCPTGGISLKN-----------ARDYLSLPNVVCVGGSWVAPKELVAAGDWAAI 200 (212)
T ss_pred EEECCCCCCCCHHHHHHHHCCCCCCCEEECCCCCHHH-----------HHHHHCCCCEEEEECHHHCCHHHHHCCCHHHH
T ss_conf 9978430016899999985779999888628989888-----------99998089819998835389999971899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998665
Q gi|254780453|r 227 AQEFQRAISL 236 (238)
Q Consensus 227 a~~i~~~i~~ 236 (238)
.++-++..++
T Consensus 201 ~~~a~ea~~l 210 (212)
T PRK06015 201 TKLAAEAAAL 210 (212)
T ss_pred HHHHHHHHHH
T ss_conf 9999999974
No 98
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.87 E-value=0.097 Score=31.67 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf 4455442024403551011357865798400369899996599899998533088888999999999
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
++.+++.+ +-..+.-.||.++ +..++.+.|+|.+-|-++|+.++||.++++++.+
T Consensus 142 l~~~~~~~-~~Pv~AiGGI~~~-----------ni~~~~~~G~~giAv~s~i~~~~dp~~~~~~l~~ 196 (196)
T cd00564 142 LREIAELV-EIPVVAIGGITPE-----------NAAEVLAAGADGVAVISAITGADDPAAAARELLA 196 (196)
T ss_pred HHHHHHHC-CCCEEEECCCCHH-----------HHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHC
T ss_conf 99999867-9998998589999-----------9999998099999972997779999999999729
No 99
>PRK02145 consensus
Probab=94.84 E-value=0.047 Score=33.71 Aligned_cols=208 Identities=19% Similarity=0.217 Sum_probs=95.6
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHH--CCCHHHHHHHH-----------HHCHHHHHHH-HHCC
Q ss_conf 15789889996079989999999973885228998689984--25589999998-----------5154667877-6404
Q gi|254780453|r 9 VDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSF--SGGLELARDLI-----------SDGKSVFLDM-KLFD 74 (238)
Q Consensus 9 ~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~--~~G~~~i~~l~-----------k~~~~If~D~-K~~D 74 (238)
|+-|+||+-|+|..+- ++++ ...+-....+|-|+-. .|...+.+||. ..+++++... +-..
T Consensus 1 ~ml~kRiiPaidi~~g----~~Vk-g~~~~~~~~~gdP~~~a~~~~~~GadelhivDld~a~~~~~~~~~~I~~i~~~~~ 75 (257)
T PRK02145 1 MALAKRIIPCLDVTAG----RVVK-GVNFVELRDAGDPVEIARRYDEQGADELTFLDITATSDGRDLILPIIEAVASQVF 75 (257)
T ss_pred CCCCCCEEEEEEEECC----EEEE-CCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9877516999999999----8985-7777773888899999999998799989999788876675408999999996568
Q ss_pred HHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEE-CCCCH----HHHHHHHCCCC
Q ss_conf 2467898------776521567508997246----046777765302355310466641-47776----88765201210
Q gi|254780453|r 75 IGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVL-TSMDD----FDLRESGYEKD 139 (238)
Q Consensus 75 IpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~L-TS~~~----~~l~~~g~~~~ 139 (238)
+|=|+-+ .++.+.++|+|-+.+... |+.++.+.+...... -++++-.- .+.+. +....-+....
T Consensus 76 iPi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~v~~~~~~fG~q~-Iv~siD~k~~~~~~~~~~~~v~~~~~~~~ 154 (257)
T PRK02145 76 IPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQC-IVVAIDAKRVSADGEPPRWEVFTHGGRKA 154 (257)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHHHHCCCCC-EEEEEEEEECCCCCCCCEEEEEECCCEEC
T ss_conf 74896277304688999998199889841556659302245787669834-49999987336777775089997787143
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC---------CCHHHHHHH---HHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC
Q ss_conf 4887654454211024431113---------410344554---4202440355101135786579840036989999659
Q gi|254780453|r 140 ISDMVRMRAVQARDIGMGGIVC---------SPQEVRMVR---EIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG 207 (238)
Q Consensus 140 ~~~~v~~~a~~a~~~g~~GvV~---------s~~ei~~ir---~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G 207 (238)
..-.....+....+.|+..+++ .+-++..++ +.+ +-.++.+.||+-.. .-.++++.|
T Consensus 155 t~~~~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~~~-~ipvIasGGi~s~~----------di~~~~~~~ 223 (257)
T PRK02145 155 TGLDAVEWARKMAELGAGEILLTSMDRDGTKSGFDLALTRAVSDAV-PVPVIASGGVGSLQ----------HLADGITEG 223 (257)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCHH----------HHHHHHHHC
T ss_conf 6774557656887618786899998477877888979999998626-99899986899999----------999999808
Q ss_pred -CCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf -98999985330888889999999998
Q gi|254780453|r 208 -ASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 208 -aD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
++-+++|+..+..+.-.+.++++...
T Consensus 224 ~~~av~~g~~~~~~~~~i~e~k~~l~~ 250 (257)
T PRK02145 224 HADAVLAASIFHYGEHTVGEAKRFMAE 250 (257)
T ss_pred CCCEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf 984876532677799899999999998
No 100
>PRK02621 consensus
Probab=94.82 E-value=0.37 Score=27.89 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHH--HHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8776521567508997246----0467777653023553104666414-77768876--520121048876544542110
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLT-SMDDFDLR--ESGYEKDISDMVRMRAVQARD 153 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LT-S~~~~~l~--~~g~~~~~~~~v~~~a~~a~~ 153 (238)
..++.+.+.|+|-+.+.+. ++.++++.+..... .-++++-..- ......++ -.+......-.+..++....+
T Consensus 87 e~~~~ll~~GadkVii~s~a~~np~~~~~~~~~fG~q-~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
T PRK02621 87 EGIKELLRAGADKVSLNSAAVRDPDLVRQASDRFGSQ-CIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAVEWAEEVAE 165 (254)
T ss_pred HHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCC-CEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999749998999886764735445568756984-339999955353478862899668845577679999988776
Q ss_pred CCCCCCCC---------CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHC-CCCEEEECCHHCCC
Q ss_conf 24431113---------41034---4554420244035510113578657984003698999965-99899998533088
Q gi|254780453|r 154 IGMGGIVC---------SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKY-GASHIVVSRPIVRA 220 (238)
Q Consensus 154 ~g~~GvV~---------s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~-GaD~iVVGR~I~~a 220 (238)
.|+..+++ .+.++ +.+++.+ +-.++.+.|++-..+ -.++++. |++-++||+++|..
T Consensus 166 ~g~geil~tdI~~DGt~~G~d~~l~~~i~~~~-~iPvi~sGGi~s~ed----------i~~~l~~~~v~gvivG~al~~~ 234 (254)
T PRK02621 166 RGAGEILLTSMDGDGTQAGYDLELTRAIAEAV-EIPVIASGGAGCCDH----------IAEALTEGKAEAALLASLLHYG 234 (254)
T ss_pred HCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHHCCCEEEEEHHHHHCC
T ss_conf 28896999888047975768869999999717-997999779999999----------9999985898198775787889
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8889999999998
Q gi|254780453|r 221 ADPVSAAQEFQRA 233 (238)
Q Consensus 221 ~dP~~aa~~i~~~ 233 (238)
+-..+.++++...
T Consensus 235 ~~~l~e~K~~l~~ 247 (254)
T PRK02621 235 QLTIAEIKADLLA 247 (254)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9999999999997
No 101
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=94.74 E-value=0.31 Score=28.42 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHH-HHHHHHH
Q ss_conf 3115789889996079989999999973-8852289986899842558999999851546678776404246-7898776
Q gi|254780453|r 7 IDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGS-SVTAAIE 84 (238)
Q Consensus 7 ~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpn-Tv~~~v~ 84 (238)
.++.++.+++--+-..+.+++.++++.+ ..-+..+++-+. .....+.|+.++++...+ .+ -.|. +-...++
T Consensus 2 ~~~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~--t~~a~~~I~~l~~~~p~~----~i-GaGTV~~~e~~~ 74 (196)
T pfam01081 2 ESILREAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLR--TPCALDAIRLLRKNRPDA----LV-GAGTVLNAQQLA 74 (196)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHHCCCC----EE-EEEECCCHHHHH
T ss_conf 67896699799997799999999999999879988999479--827999999999649996----79-998376899999
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----
Q ss_conf 5215675089972460467777653023553-10466641477768876520121048876544542110244311----
Q gi|254780453|r 85 HIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI---- 159 (238)
Q Consensus 85 ~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv---- 159 (238)
.+.+.|++++. +|+.-.+..+.+++.+. .+=||. |. .+. ..|.+.|++-+
T Consensus 75 ~a~~aGA~Fiv---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---sEi-----------------~~A~~~G~~~vKlFP 129 (196)
T pfam01081 75 EAAEAGAQFVV---SPGLTADLLKHAVDVKIPLIPGVS--TP---SEI-----------------MLGLDLGLTRFKFFP 129 (196)
T ss_pred HHHHCCCCEEE---CCCCHHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEECC
T ss_conf 99974999999---787639999999973996637859--99---999-----------------999987999899787
Q ss_pred ---CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf ---134103445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 160 ---VCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 160 ---V~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
.-++..++.++.-++.-.++-|.||.+. +..+-+++|+...++|..+..
T Consensus 130 A~~~Gg~~~lkal~~p~p~~~f~ptGGv~~~-----------N~~~yl~~g~v~~~~GS~l~~ 181 (196)
T pfam01081 130 AEASGGVPAIKALAGPFPQVRFCPTGGIHPA-----------NVRDYLALPNILCVGGSWLVP 181 (196)
T ss_pred CHHCCCHHHHHHHHCCCCCCEEEEECCCCHH-----------HHHHHHHCCCEEEEECHHHCC
T ss_conf 3101849999998577999869980798988-----------899999689869998936489
No 102
>PRK03220 consensus
Probab=94.71 E-value=0.32 Score=28.28 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=74.7
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHC-------CCCHHHHHHHHHH
Q ss_conf 8776521567508997246----0467777653023553104666414777688765201-------2104887654454
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGY-------EKDISDMVRMRAV 149 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~-------~~~~~~~v~~~a~ 149 (238)
..++.+.+.|+|-+.+-.. |.-++++.+..... .-++++-.-.-.+.......|+ .....-.....+.
T Consensus 88 e~~~~ll~~GadkVvigs~a~~~p~~~~~~~~~fG~q-~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~ 166 (257)
T PRK03220 88 EDVDSLLRAGADKVSVNTAAIARPELLAELARRFGSQ-CIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTGIDAVEWAA 166 (257)
T ss_pred HHHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCE-EEEEEEEEEECCCCCCCCCCCEEEEECCCEEECCCCHHHHHH
T ss_conf 9999999819750872066775947778999870986-699999988625677434687499972882602875999999
Q ss_pred HHHHCCCCCCCC---------CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHH
Q ss_conf 211024431113---------41034---455442024403551011357865798400369899996599899998533
Q gi|254780453|r 150 QARDIGMGGIVC---------SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPI 217 (238)
Q Consensus 150 ~a~~~g~~GvV~---------s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I 217 (238)
...+.|+..+++ ++-++ +.+++.. +-.++.+.||+-.. | -.++++.|+|.+++|+++
T Consensus 167 ~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~~~-~~piIasGGv~s~~----d------i~~l~~~g~~gv~~g~a~ 235 (257)
T PRK03220 167 RGAELGVGEILLNSMDADGTKAGFDLEMLRAVRAAV-TVPVIASGGAGAVE----H------FAPAVAAGADAVLAASVF 235 (257)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----H------HHHHHHCCCCEEEEHHHH
T ss_conf 986269888999988686602378969999999748-99989987899999----9------999997899799874687
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0888889999999998
Q gi|254780453|r 218 VRAADPVSAAQEFQRA 233 (238)
Q Consensus 218 ~~a~dP~~aa~~i~~~ 233 (238)
|.-+--...++++.+.
T Consensus 236 ~~~~~s~~~~k~~l~~ 251 (257)
T PRK03220 236 HFGELTIGQVKAALAA 251 (257)
T ss_pred HCCCCCHHHHHHHHHH
T ss_conf 8899889999999998
No 103
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=94.61 E-value=0.41 Score=27.57 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98776521567508997246046777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
...+..+.+.++++++.|... --...++..+..+.+++.. .|| .+.+..+.++|+|++
T Consensus 104 ~~~~~~~~~~~~~~v~~~~G~-p~~~~v~~~~~~G~~v~~~--v~s-------------------~~~A~~a~~~G~D~i 161 (330)
T pfam03060 104 GDDDDSLKDAKPKVVSFGFGL-PPEDVIERLKESGTKVIPT--VSS-------------------AKEARKAEAAGADAV 161 (330)
T ss_pred HHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHCCCEEEEE--CCC-------------------HHHHHHHHHCCCCEE
T ss_conf 999999997499999989989-8279999999879989998--189-------------------999999998199989
Q ss_pred CCCCHH----------------HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 134103----------------4455442024403551011357865798400369899996599899998533088
Q gi|254780453|r 160 VCSPQE----------------VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 160 V~s~~e----------------i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
|+.+.| +..+++.+ +-.++...||.- +. ....|+..|||-+.+|-.-..+
T Consensus 162 V~qG~eAGGH~G~~~~~~~~~L~~~v~~~~-~iPvIaAGGI~d-g~---------~iaaalalGA~gV~mGTrFlat 227 (330)
T pfam03060 162 VAQGPEAGGHRGTEVGTGTFLLVPTVVDAV-DIPVIAAGGIAD-GR---------GIAAALALGAEGVQIGTRFLAT 227 (330)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEECCCCC-HH---------HHHHHHHCCCCEEEECCEEEEC
T ss_conf 996676677788877730777789999871-697785266289-99---------9999996799899971300115
No 104
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.59 E-value=0.27 Score=28.74 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=95.0
Q ss_pred CEEEEEECC--CHHHHHHHHH-HHCCCCCEEEE-----CHHHHHCCCHHHHHHHHHHCHHHHH-HHHHCCHHHHHHHHHH
Q ss_conf 889996079--9899999999-73885228998-----6899842558999999851546678-7764042467898776
Q gi|254780453|r 14 RLVVGLDLP--TVKEAERIVS-ILSDTVSFYKI-----GYHLSFSGGLELARDLISDGKSVFL-DMKLFDIGSSVTAAIE 84 (238)
Q Consensus 14 ~livALD~~--~~~e~l~l~~-~l~~~i~~iKi-----g~~l~~~~G~~~i~~l~k~~~~If~-D~K~~DIpnTv~~~v~ 84 (238)
+|.+=.|.. .-....++++ .+.+-+.++-+ ...-++..+.++-.-+++++.++|. |+ +.
T Consensus 5 sLYlVTD~~~~~g~~l~~vV~~Al~GGvt~VQlRdK~~~~~e~~~~a~~l~~l~~~~gvpliVNDr------------vd 72 (738)
T PRK09517 5 SLYLVTDPALGGGEKVAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDR------------LD 72 (738)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCH------------HH
T ss_conf 499992632137998899999999769958996489998899999999999999871997897285------------99
Q ss_pred HHCCCCCEEEEEECC-CHH-HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCC-CC
Q ss_conf 521567508997246-046-777765302355310466641477768876520121-04887654454211024431-11
Q gi|254780453|r 85 HIANMGVAMLTVHAY-PQT-MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEK-DISDMVRMRAVQARDIGMGG-IV 160 (238)
Q Consensus 85 ~~~~~g~d~iTvH~~-~~~-l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~-~~~~~v~~~a~~a~~~g~~G-vV 160 (238)
-+...++| ||.. .+| ...+.+... .-+++|++.-|. ++++...-.. ..-+++---.-.+...+-|. -.
T Consensus 73 vAla~~Ad---VHlGQ~Dlp~~~aR~llG--~~~iiGlS~~t~---~~~~~a~~~~a~~vDYlG~Gpvf~T~TK~da~~~ 144 (738)
T PRK09517 73 VAVELGLH---VHIGQGDTPYTQARRLLP--AHLELGLTIETL---DQLEAVIAQCAETPDVIGIGPVASTATKPDAPPA 144 (738)
T ss_pred HHHHCCCC---CEECCCCCCHHHHHHHCC--CCCEEEEECCCH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 99875899---641887799999998659--987899725998---9999998545678987857887789998888878
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 341034455442024403551011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 161 CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 161 ~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
+....++.+++.. +-..+--.||...+ ..+.+..|+|-+-|=++|..++||.++++++++...
T Consensus 145 ~G~~~l~~i~~~~-~iPvVAIGGI~~~n-----------~~~v~~aGadGvAVVSAI~~A~DP~aAaReLr~a~~ 207 (738)
T PRK09517 145 LGVDGIAEIAAVA-QIASVAIGGVGLRN-----------AAELAATGIDGLCVVSAIMAAPNPAAAARELRTAFQ 207 (738)
T ss_pred CCHHHHHHHHHHC-CCCEEEECCCCHHH-----------HHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8999999999847-99989989988888-----------999997499889842344169999999999999997
No 105
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.58 E-value=0.18 Score=29.88 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=80.2
Q ss_pred HHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 8999999851-5466787764042467898776521567508997246----0467777653023553104666414777
Q gi|254780453|r 53 LELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMD 127 (238)
Q Consensus 53 ~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~ 127 (238)
.+.|+++.+. +.|+-++--+.+ ...++.+.++|++-+.+-+. ++-++++.+..... .-++++- .-+
T Consensus 64 ~~~I~~i~~~~~~pi~vGGGIrs-----~~~i~~~l~~Ga~kvvigs~~~~~~~~~~~i~~~~G~~-~ivvsiD---~k~ 134 (240)
T PRK13585 64 ADIIEKIVEATDVSIQLGGGIRS-----VEDAASLLDLGVDRVILGTAAIENPELVRELSDEFGSE-RVMVSLD---AKD 134 (240)
T ss_pred HHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHCCC-EEEEEEE---EEC
T ss_conf 99999999737977899788587-----99999999769989993981131842889999873972-1799999---306
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 6887652012104887654454211024431113---------4103---445544202440355101135786579840
Q gi|254780453|r 128 DFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC---------SPQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQK 195 (238)
Q Consensus 128 ~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~---------s~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~ 195 (238)
.+ +.--++.......+....+...+.|+..+++ ++-+ ++.+++.. +-.++.+.||+-.. |
T Consensus 135 ~~-v~~~gw~~~~~~~~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~i~~~~-~~pviasGGv~s~~----d-- 206 (240)
T PRK13585 135 GE-VVIEGWTESTGKDPVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRELVDSV-DIPVIASGGVTSLD----D-- 206 (240)
T ss_pred CC-CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----H--
T ss_conf 50-2324765678863557778888638735898642332232578989999999868-99999988999999----9--
Q ss_pred EECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf 0369899996599899998533088888999999999
Q gi|254780453|r 196 RFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 196 r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
-....+.|++-++||+++|.-.=..+.+.++.+
T Consensus 207 ----i~~l~~~g~~gvivG~Al~~g~i~l~e~~~~~~ 239 (240)
T PRK13585 207 ----VKALKEAGAAGVVVGSALYKGKFTLEEALEAAE 239 (240)
T ss_pred ----HHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHHH
T ss_conf ----999997899789987687679978999999964
No 106
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.53 E-value=0.16 Score=30.25 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=37.4
Q ss_pred CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHH
Q ss_conf 0355101135786579840036989999659989999853308888899999999986
Q gi|254780453|r 177 MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAI 234 (238)
Q Consensus 177 ~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i 234 (238)
.++.-.||..+ +..+.++.|+|.+-|=++|+.|+||.++++++.+..
T Consensus 160 PvvAIGGI~~~-----------n~~~v~~~Ga~gvAViSaI~~a~dp~~a~~~l~~l~ 206 (211)
T PRK03512 160 PTVAIGGISLE-----------RAPAVLATGVGSIAVVSAITQAADWRLATAQLLEIA 206 (211)
T ss_pred CEEEECCCCHH-----------HHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHH
T ss_conf 98998896899-----------999999839999999518746999999999999986
No 107
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.53 E-value=0.33 Score=28.24 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=65.2
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98776521567508997246046777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
...++.+.+.++++++.|.... +..++..+..+.+++.. .+|. +.++.+.+.|+|++
T Consensus 70 ~~~~~~~~~~~v~~v~~~~g~p--~~~v~~l~~~g~~v~~~--v~s~-------------------~~A~~a~~~GaD~i 126 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFGPP--AEVVERLKAAGIKVIPT--VTSV-------------------EEARKAEAAGADAL 126 (236)
T ss_pred HHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHCCCEEEEE--CCCH-------------------HHHHHHHHCCCCEE
T ss_conf 9999999976999999879897--89999999829989995--8989-------------------99999998189989
Q ss_pred CCCCH---------------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 13410---------------34455442024403551011357865798400369899996599899998533088
Q gi|254780453|r 160 VCSPQ---------------EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 160 V~s~~---------------ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
|+.+. -+..+|+.+ +-.++...||.-.. +...|+..|||.+.+|-.-..+
T Consensus 127 v~qG~eAGGH~g~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~----------~i~aal~lGA~gV~~GTrfl~t 191 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGR----------GIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEECCCCCHH----------HHHHHHHHCCCEEEECCHHHHC
T ss_conf 99777777788987555677999999982-98689654627789----------9999998089799955385708
No 108
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.50 E-value=0.36 Score=27.99 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=71.2
Q ss_pred HHHHCCCCCCEEEEEEECCCCHHHHHHHH-----CC---CCHHHHHHHHHHHHHHCCCCCCCC-----------CCHHHH
Q ss_conf 65302355310466641477768876520-----12---104887654454211024431113-----------410344
Q gi|254780453|r 107 VSVVRDTGICLLAVTVLTSMDDFDLRESG-----YE---KDISDMVRMRAVQARDIGMGGIVC-----------SPQEVR 167 (238)
Q Consensus 107 ~~~~~~~~~~il~Vt~LTS~~~~~l~~~g-----~~---~~~~~~v~~~a~~a~~~g~~GvV~-----------s~~ei~ 167 (238)
.+++...++ .+.++.++|.+-++..+.. ++ ..=.+....+...|+++|+..++. +.++++
T Consensus 87 AraA~~~gi-~~~lSt~ss~slEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~ 165 (299)
T cd02809 87 ARAAAAAGI-PFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLA 165 (299)
T ss_pred HHHHHHHCC-CEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 999997056-4311376656689999744898467764369999999999999985999899970589878879999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEE----CCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5544202440355101135786579840036989---999659989999----8533088888999999999866
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPE---TALKYGASHIVV----SRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVV----GR~I~~a~dP~~aa~~i~~~i~ 235 (238)
.+|+.++-. ++.=|| +||+ .|++.|+|.||| ||-.-.+.-|.++..++.+.+.
T Consensus 166 ~l~~~~~~p--~i~KGi-------------~~~~DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~ 225 (299)
T cd02809 166 WLRSQWKGP--LILKGI-------------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG 225 (299)
T ss_pred HHHHHCCCC--EEEECC-------------CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999866998--799727-------------889999999985998899728873336888778999999999854
No 109
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=94.48 E-value=0.071 Score=32.52 Aligned_cols=125 Identities=16% Similarity=0.299 Sum_probs=73.6
Q ss_pred HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-------HHHHCCCCHHHHHHHHH
Q ss_conf 98776521567508997246----04677776530235531046664147776887-------65201210488765445
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDL-------RESGYEKDISDMVRMRA 148 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l-------~~~g~~~~~~~~v~~~a 148 (238)
...++.+.+.|++.+.+=+. ++.++++++..... +++ | |+|..+= .=-|+.....-....++
T Consensus 85 ~e~v~~ll~~Gv~RVI~GT~A~~~~~~v~~~~~~~g~~--~i~-V----~lD~~~g~~G~~~V~v~GW~E~s~~~~~~~~ 157 (241)
T TIGR00007 85 LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPE--RIV-V----SLDARDGEEGVKEVAVKGWKEKSEVSLEELA 157 (241)
T ss_pred HHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCC--CEE-E----EEEEECCCCCEEEEEEEEEECCCCCCHHHHH
T ss_conf 89999999739857997332210869999999984899--659-9----9863148875178887404113562799999
Q ss_pred HHHHHCC-CCCCCC---------CCHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH--CCCCEEEE
Q ss_conf 4211024-431113---------4103445---5442024403551011357865798400369899996--59989999
Q gi|254780453|r 149 VQARDIG-MGGIVC---------SPQEVRM---VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK--YGASHIVV 213 (238)
Q Consensus 149 ~~a~~~g-~~GvV~---------s~~ei~~---ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~--~GaD~iVV 213 (238)
+.-.+.| +.+++| ++-+.+. +.+.+..-.++.+.||+-. +| -+.+.+ .|...+||
T Consensus 158 ~~~~~~G~~~~ii~TdI~~DGtl~G~n~~~~~~~~~~~~~~~viaSGGv~s~----~D------~~~L~~~~~G~~GvIv 227 (241)
T TIGR00007 158 KRLEELGELEGIIYTDISRDGTLSGPNFELTKELVKALVNVPVIASGGVSSI----DD------LRALKEIELGVYGVIV 227 (241)
T ss_pred HHHHHCCCCCEEEEEEEECCCCEECCCCCHHHHHHHHHCCCEEEEECCCCCH----HH------HHHHHHCCCCCCEEEE
T ss_conf 9985158633689975200672007873288999987358418994265788----99------9999971598327998
Q ss_pred CCHHCCCC
Q ss_conf 85330888
Q gi|254780453|r 214 SRPIVRAA 221 (238)
Q Consensus 214 GR~I~~a~ 221 (238)
||++|+..
T Consensus 228 GkALY~g~ 235 (241)
T TIGR00007 228 GKALYEGK 235 (241)
T ss_pred EEEECCCC
T ss_conf 62111688
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.37 E-value=0.46 Score=27.29 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=74.2
Q ss_pred HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 98776521567508997246----0467777653023553104666414777-688765201210488765445421102
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMD-DFDLRESGYEKDISDMVRMRAVQARDI 154 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~-~~~l~~~g~~~~~~~~v~~~a~~a~~~ 154 (238)
...++.+.+.|+|-+.+... +..++++.+..... .-++++-..-..+ ...+..-+......-.+..+.+...+.
T Consensus 83 ~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~~~~Gsq-~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~ 161 (243)
T cd04731 83 LEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQ-CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL 161 (243)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCC-CEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 79999999779978998984423771435788756993-09999997653789628984698441267899999999846
Q ss_pred CCCCCCC---------CCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEECCHHHHHH-CCCCEEEECCHHCCCCC
Q ss_conf 4431113---------4103445544202--4403551011357865798400369899996-59989999853308888
Q gi|254780453|r 155 GMGGIVC---------SPQEVRMVREIVG--HNMVIVTPGIRMLGSATDGQKRFATPETALK-YGASHIVVSRPIVRAAD 222 (238)
Q Consensus 155 g~~GvV~---------s~~ei~~ir~~~~--~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~-~GaD~iVVGR~I~~a~d 222 (238)
|+..+++ .+.+++.++++.. +-.++.+.||+-.. .-.++++ .|+|-+++|+.+|..+-
T Consensus 162 G~geil~tdI~~DGt~~G~d~~l~~~i~~~~~~piI~sGGi~~~~----------di~~~l~~~~~~gv~~g~~~~~~~~ 231 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPE----------HFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHH----------HHHHHHHHCCCEEEEEHHHHHCCCC
T ss_conf 987899987257685665799999999986899999988999999----------9999998789829988227676998
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q gi|254780453|r 223 PVSAAQEFQRA 233 (238)
Q Consensus 223 P~~aa~~i~~~ 233 (238)
..+.++++..+
T Consensus 232 ~l~~~k~~L~~ 242 (243)
T cd04731 232 TIAELKEYLAE 242 (243)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999861
No 111
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.36 E-value=0.061 Score=32.95 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=42.9
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 454211024431113410-------------3445544202440355101135786579840036989999659989999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
-+..|.+.|++|+|.|-| -+..+++.++ .-+++=.|||- |.+ .-.|+..|||++-|
T Consensus 249 DA~~A~~~G~dgIiVSNHGGRQLD~a~~~id~Lp~I~~av~-~~V~~DgGIRr-G~D---------V~KALALGA~aV~i 317 (361)
T cd04736 249 DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY-KPVLIDSGIRR-GSD---------IVKALALGANAVLL 317 (361)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC-CEEEEECCCCC-HHH---------HHHHHHCCCCEEEE
T ss_conf 99999876999999758863335777414777999999719-94999489887-899---------99999779998987
Q ss_pred CCHHCC
Q ss_conf 853308
Q gi|254780453|r 214 SRPIVR 219 (238)
Q Consensus 214 GR~I~~ 219 (238)
|||-.-
T Consensus 318 GRp~ly 323 (361)
T cd04736 318 GRATLY 323 (361)
T ss_pred CHHHHH
T ss_conf 789999
No 112
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.24 E-value=0.067 Score=32.70 Aligned_cols=79 Identities=32% Similarity=0.364 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHH---HHCCC-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCC
Q ss_conf 454211024431113410-------------3445544---20244-035510113578657984003698999965998
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVRE---IVGHN-MVIVTPGIRMLGSATDGQKRFATPETALKYGAS 209 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~---~~~~~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD 209 (238)
-+..|.+.|++|+|.|-| -+..+++ .++.. .+++-.|||- |.+ .-.|+..|||
T Consensus 226 DA~~A~~~G~dgIiVSNHGGRqLD~~~~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~-G~D---------V~KAlALGA~ 295 (344)
T cd02922 226 DAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRR-GTD---------VLKALCLGAK 295 (344)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC-HHH---------HHHHHHCCCC
T ss_conf 999999659988997188621257883189998999998898588708997188575-789---------9999976999
Q ss_pred EEEECCHHCCC------CCHHHHHHHHHHHHH
Q ss_conf 99998533088------888999999999866
Q gi|254780453|r 210 HIVVSRPIVRA------ADPVSAAQEFQRAIS 235 (238)
Q Consensus 210 ~iVVGR~I~~a------~dP~~aa~~i~~~i~ 235 (238)
++-||||..-+ +--..+.+-+++||.
T Consensus 296 aV~iGRp~l~gla~~G~~Gv~~~l~il~~El~ 327 (344)
T cd02922 296 AVGLGRPFLYALSAYGEEGVEKAIQILKDEIE 327 (344)
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 89767899999884439999999999999999
No 113
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.12 E-value=0.13 Score=30.94 Aligned_cols=195 Identities=20% Similarity=0.271 Sum_probs=110.1
Q ss_pred CCCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHH-HHHCCC-HHHHHHHHHHCHHHHHHHHHCCHHHHH-----H
Q ss_conf 157898899960-79989999999973885228998689-984255-899999985154667877640424678-----9
Q gi|254780453|r 9 VDEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYH-LSFSGG-LELARDLISDGKSVFLDMKLFDIGSSV-----T 80 (238)
Q Consensus 9 ~~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~-l~~~~G-~~~i~~l~k~~~~If~D~K~~DIpnTv-----~ 80 (238)
..-+|||++.-- +++.+...+-++.-+..+..+-+--. .-...+ ..+++.+...+ +.=.|||. +
T Consensus 13 ~~f~SRLilGTgkY~s~~~~~~ai~aSgaeiVTVAlRR~~~~~~~~~~~~l~~i~~~~--------~~~LPNTAGc~tae 84 (267)
T CHL00162 13 KSFNSRLMLGTGKYRNLEEAINSIEASGCEIVTVAIRRAQNNKLNGNSSLLDGLDWNK--------LWLLPNTAGCQTAE 84 (267)
T ss_pred EEEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCC--------EEECCCCCCCCCHH
T ss_conf 9988532787289999999999999969987999973255778887467874337024--------17856630228799
Q ss_pred HHHHH------HCC----CCCEEEEE--EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCC
Q ss_conf 87765------215----67508997--24-----60---4677776530235531046664147776---887652012
Q gi|254780453|r 81 AAIEH------IAN----MGVAMLTV--HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYE 137 (238)
Q Consensus 81 ~~v~~------~~~----~g~d~iTv--H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~ 137 (238)
.+++. +.. ++-+++-+ ++ .| ++++++....++ +-.++ .-|+-|. +.|.+.|+.
T Consensus 85 EAVr~A~lAREl~~~~g~~~tnwIKLEVi~D~~tLlPD~~etl~Aae~Lv~e-GF~Vl---pY~~dD~v~akrLe~~Gc~ 160 (267)
T CHL00162 85 EAIRVAFLGRELAKQLGQEDNNFVKLEVIPDPKYLLPDPIGTLKAAEFLVRK-GFTVL---PYINADPVLAKQLEDIGCA 160 (267)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EECCCCHHHHHHHHHCCCE
T ss_conf 9999999999985301567897799998279877798878999999999978-99998---9548998999999865986
Q ss_pred CCHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCH
Q ss_conf 104887654454211024-4311134103445544202440355101135786579840036989999659989999853
Q gi|254780453|r 138 KDISDMVRMRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRP 216 (238)
Q Consensus 138 ~~~~~~v~~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~ 216 (238)
.-+. ++...| =.|+. -|.-++.+++.. +-.++|--|||.+.+ .-+|++.|+|-+.|--+
T Consensus 161 avMP--------lgsPIGSg~Gl~-n~~~l~~i~e~~-~vPvIVDAGiG~pSd----------Aa~aMElG~DaVL~NTA 220 (267)
T CHL00162 161 TVMP--------LGSPIGSGQGLQ-NLLNLQIIIENA-KIPVIIDAGIGTPSE----------ASQAMELGASGVLLNTA 220 (267)
T ss_pred EEEE--------CCCCCCCCCCCC-CHHHHHHHHHCC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEECHH
T ss_conf 8863--------455123688758-999999999648-998899689896788----------89999746777870167
Q ss_pred HCCCCCHHHHHHHHHHHHH
Q ss_conf 3088888999999999866
Q gi|254780453|r 217 IVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 217 I~~a~dP~~aa~~i~~~i~ 235 (238)
|-+|+||...|+.|+..+.
T Consensus 221 IA~A~dPv~MA~A~k~AV~ 239 (267)
T CHL00162 221 VAKAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHCCCCHHHHHHHHHHHHH
T ss_conf 6716998999999999999
No 114
>KOG1606 consensus
Probab=94.09 E-value=0.12 Score=31.03 Aligned_cols=41 Identities=29% Similarity=0.518 Sum_probs=36.4
Q ss_pred ECCHHHH---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3698999---9659989999853308888899999999986651
Q gi|254780453|r 197 FATPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 197 ~~tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
+.||.+| ++.|+|-+.||.+|.+|.||.+.++.|.+...|-
T Consensus 218 vaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy 261 (296)
T KOG1606 218 VATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHY 261 (296)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 58816799999808984886554236898899999999998705
No 115
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.01 E-value=0.53 Score=26.90 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECC-
Q ss_conf 998999999997388-522899868998425589999998515466787764042467898776521567508997246-
Q gi|254780453|r 22 PTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAY- 99 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~- 99 (238)
.+.++-+++++.|.. -|..+++|+|.....-.+.++.+.+.+.+.. ..=-.-++...++.+.+.|++.+.+...
T Consensus 23 fs~~~K~~ia~~L~~~GV~~IEvG~P~~~~~e~~~~~~i~~~~l~~~----i~~~~R~~~~di~~a~~~g~~~v~i~~~~ 98 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNAS----ILAWNRAVKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCE----EEEECCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 99999999999999819899999477778348999999985679845----88740357877999985796989999606
Q ss_pred -C---------------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC--
Q ss_conf -0---------------4677776530235531046664147776887652012104887654454211024431113--
Q gi|254780453|r 100 -P---------------QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC-- 161 (238)
Q Consensus 100 -~---------------~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~-- 161 (238)
+ +++.++++.+++.+..+ .+ +-++. ...+ .+.+.+.+..+.++|++-+..
T Consensus 99 Sd~h~~~~l~~t~~e~l~~~~~~v~~Ak~~Gl~v-~f------~~eD~----~r~~-~~~l~~~~~~a~~~Gad~I~l~D 166 (378)
T PRK11858 99 SDIHLKYKLKKTREEVLERLVEAVEYAKDHGLYV-SF------SAEDA----SRTD-LDFLIEAAKAAEEAGADRVRFCD 166 (378)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EE------EEECC----CCCC-HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7999999968998999999999999999769869-99------44012----5689-99999999999974998999636
Q ss_pred -----CCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf -----41034----4554420244035510113578657984003698999965998999
Q gi|254780453|r 162 -----SPQEV----RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 162 -----s~~ei----~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
.|.++ +.+++.++ +.=|+... ++ -+.=+++--.|+.+||+++=
T Consensus 167 T~G~~~P~~v~~~v~~l~~~~~-----~~i~~H~H-Nd--~GlAvANalaAv~AGa~~v~ 218 (378)
T PRK11858 167 TVGILDPFTMYELVKELVEAVD-----IPIEVHCH-ND--FGMATANAIAGIEAGATQVH 218 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-----CCEEEEEE-CC--CCHHHHHHHHHHHHCCCEEE
T ss_conf 5566699999999999997269-----85599970-77--55599999999980999899
No 116
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.90 E-value=0.58 Score=26.62 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=69.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHHHCCHH-HHHHHHHHHHCCCCC
Q ss_conf 8899960799899999999738852289986899842558999999851-54667877640424-678987765215675
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISD-GKSVFLDMKLFDIG-SSVTAAIEHIANMGV 91 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K~~DIp-nTv~~~v~~~~~~g~ 91 (238)
.||+-+=-++.+|++.-+.+-.+..+.+++=.+++.++...-++.|.+. ..||+.=++-.+-+ ..-....+.+.++|+
T Consensus 1 miC~~i~~~t~~e~~~~~~~a~~~aD~VElRvD~L~~~~~~~l~~L~~~~~~PIit~rr~~~~~e~~~~e~l~~~~~lg~ 80 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSLKLVDCIELRVDLLLSLSDQELKKLITLAPIPILTWKKHKSCSEAAWIEKTQSLAKLQP 80 (477)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97798358899999999998760598899986002579999999999649986899965876883569999999998699
Q ss_pred EEEEEEC-CC-HHHHHHHHHHCCCCCCEEE
Q ss_conf 0899724-60-4677776530235531046
Q gi|254780453|r 92 AMLTVHA-YP-QTMRSAVSVVRDTGICLLA 119 (238)
Q Consensus 92 d~iTvH~-~~-~~l~~~~~~~~~~~~~il~ 119 (238)
+|+=+-. .+ +.+++..+.. ..+++++
T Consensus 81 ~yvDlEl~~~~~~l~~i~~~~--~~tkiI~ 108 (477)
T PRK09310 81 KYLDIDKDFPKEALQTIRKLH--PKIKIIL 108 (477)
T ss_pred CEEEEECCCCHHHHHHHHHCC--CCCEEEE
T ss_conf 899986568688999999608--9977999
No 117
>KOG3157 consensus
Probab=93.89 E-value=0.31 Score=28.38 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCH-----HHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 2558999999851546678776404246789877652156750899724604-----67777653023553104666414
Q gi|254780453|r 50 SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQ-----TMRSAVSVVRDTGICLLAVTVLT 124 (238)
Q Consensus 50 ~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~-----~l~~~~~~~~~~~~~il~Vt~LT 124 (238)
.||...+.||.+.-+.+-.|.|+|=||+--..-++.+..- ....+|+.... .+.++.......++...-|-+=|
T Consensus 56 ~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~sv-pnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNT 134 (244)
T KOG3157 56 HFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLSV-PNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNT 134 (244)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECHHHHCCCCHHCCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 0458899999984624762132656441323110011067-864788731269898888899995299997289999616
Q ss_pred CCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCC---------CCH-----HHHHHHHHHCCCC------EEEEEC
Q ss_conf 7776887652012-104887654454211024431113---------410-----3445544202440------355101
Q gi|254780453|r 125 SMDDFDLRESGYE-KDISDMVRMRAVQARDIGMGGIVC---------SPQ-----EVRMVREIVGHNM------VIVTPG 183 (238)
Q Consensus 125 S~~~~~l~~~g~~-~~~~~~v~~~a~~a~~~g~~GvV~---------s~~-----ei~~ir~~~~~~~------~~itPG 183 (238)
|-.+ . ..|.. ..+.+++...-.-.+...+.|+-+ |+. -+..+|+.+.+.+ +-++=|
T Consensus 135 SGEd--~-K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMG 211 (244)
T KOG3157 135 SGED--S-KSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPADQVELSMG 211 (244)
T ss_pred CCCC--C-CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 7754--4-579883665999999998687634520477535666556899965799999999999984898678100235
Q ss_pred CCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHH
Q ss_conf 135786579840036989999659989999853308888899
Q gi|254780453|r 184 IRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVS 225 (238)
Q Consensus 184 I~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~ 225 (238)
- + + .-..||+.|++-+=||..|..+..+.+
T Consensus 212 M-----S-~------DF~~AIe~Gst~VRvGStIFG~R~y~k 241 (244)
T KOG3157 212 M-----S-A------DFLLAIEQGSTNVRVGSTIFGAREYKK 241 (244)
T ss_pred C-----C-H------HHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 6-----3-6------699999808853773252126788888
No 118
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.89 E-value=0.23 Score=29.23 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=64.9
Q ss_pred HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98776521567508997246----04677776530235531046664147776887652012104887654454211024
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIG 155 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g 155 (238)
...++.+.++|++-+.+-.. ++.++++.+...+ . -++++ -..+.+ ..--|+.....-.+..+++...+.|
T Consensus 88 ~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~~f~~-~-Ivv~i---D~~~~~-v~~~GW~~~s~~~~~d~~~~~~~~g 161 (234)
T PRK13587 88 KSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPG-R-IYLSV---DAYGED-IKVNGWEEDTELNLFSFVRQLSDIP 161 (234)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCC-C-EEEEE---ECCCCE-EEECCCCEECCCCHHHHHHHHHHCC
T ss_conf 9999999976899999888130286999999986667-7-68712---023854-5445751425867999999997439
Q ss_pred CCCCCCC---------CHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 4311134---------103---4455442024403551011357865798400369899996599899998533088
Q gi|254780453|r 156 MGGIVCS---------PQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 156 ~~GvV~s---------~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
+..++|. +-+ ++.+.+. .+-.++.+.||+-. +| -....+.|.+-+||||++|+-
T Consensus 162 ~~~il~TdI~rDGtl~G~n~el~~~i~~~-~~~pvIaSGGv~sl----~D------i~~L~~~gv~GvIvGkAlYeg 227 (234)
T PRK13587 162 LGGIIYTDIAKDGKMSGPNFELTGQLVKA-TTIPVIASGGIRHQ----QD------IQRLASLNVHAAIIGKAAHQA 227 (234)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCH----HH------HHHHHHCCCCEEEEEEECCCC
T ss_conf 87899840266574557999999999976-79999998998999----99------999998899899999750178
No 119
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.2 Score=29.64 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=69.8
Q ss_pred HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98776521567508997246----04677776530235531046664147776887652012104887654454211024
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIG 155 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g 155 (238)
...++.+.+.|++.+++-.. |+.++++.+...+ .-+++ |..-+.+. .-.|+.....-.+..+++.-.+.|
T Consensus 87 ~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~--rivv~---lD~r~g~v-av~GW~e~s~~~~~~l~~~~~~~g 160 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGD--RIVVA---LDARDGKV-AVSGWQEDSGVELEELAKRLEEVG 160 (241)
T ss_pred HHHHHHHHHCCCCEEEEECCEECCHHHHHHHHHHCCC--CEEEE---EECCCCCC-CCCCCHHCCCCCHHHHHHHHHHCC
T ss_conf 9999999987998899803121699999999998598--28999---97148853-204610125678999999998578
Q ss_pred CCCCCC---------CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHC-CCCEEEECCHHCCCC-
Q ss_conf 431113---------41034---4554420244035510113578657984003698999965-998999985330888-
Q gi|254780453|r 156 MGGIVC---------SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKY-GASHIVVSRPIVRAA- 221 (238)
Q Consensus 156 ~~GvV~---------s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~-GaD~iVVGR~I~~a~- 221 (238)
+.+++| ++-+. +.+.+.+ .-.++.+.||+- .+|- +.+.+. |...+||||++|.-.
T Consensus 161 ~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~ipviaSGGv~s----~~Di------~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 161 LAHILYTDISRDGTLSGPNVDLVKELAEAV-DIPVIASGGVSS----LDDI------KALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCCEEEECCCCC----HHHH------HHHHHCCCCCEEEEEHHHHCCCC
T ss_conf 776999851446645777879999999982-767898668687----9999------99985579728998668964897
Q ss_pred CHHHHHHHH
Q ss_conf 889999999
Q gi|254780453|r 222 DPVSAAQEF 230 (238)
Q Consensus 222 dP~~aa~~i 230 (238)
++.++.+-.
T Consensus 230 ~l~ea~~~~ 238 (241)
T COG0106 230 TLEEALACV 238 (241)
T ss_pred CHHHHHHHH
T ss_conf 899999998
No 120
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=93.58 E-value=0.49 Score=27.12 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCHHHHH---HCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 6989999---65998999985330888889999999998
Q gi|254780453|r 198 ATPETAL---KYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 198 ~tp~~Ai---~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
.||.++. ..|||.+.||-++..|.||+.+..+....
T Consensus 221 ~~~~Dv~~~a~aGadAvLVGEalvta~dP~~~v~~l~~a 259 (695)
T PRK13802 221 FGAVEVEDYARAGADAVLVGEGVATADNHELAVERLVKA 259 (695)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHH
T ss_conf 998999999977999999780341589879999999973
No 121
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=93.48 E-value=0.15 Score=30.46 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=39.6
Q ss_pred ECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 0113578657984003698999---965998999985330888889999999998665
Q gi|254780453|r 182 PGIRMLGSATDGQKRFATPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 182 PGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
|=+++.-+. +.||.+| +..|+|-+.||.+|.+|.||.+.++.+.+...+
T Consensus 205 PvvnfaaGG------vatPadaal~mqlG~~GvfvGsGifks~~P~~~a~aiv~a~~~ 256 (298)
T TIGR00343 205 PVVNFAAGG------VATPADAALLMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 256 (298)
T ss_pred CEEEECCCC------CCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 446413576------4655789999984778247534200056778999999999972
No 122
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.17 Score=30.13 Aligned_cols=192 Identities=24% Similarity=0.360 Sum_probs=110.3
Q ss_pred CCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHH-HHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHHHH
Q ss_conf 898899960-799899999999738852289986899-84255899999985154667877640424678-----98776
Q gi|254780453|r 12 KKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHL-SFSGGLELARDLISDGKSVFLDMKLFDIGSSV-----TAAIE 84 (238)
Q Consensus 12 k~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l-~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~v~ 84 (238)
.|||++.-- +++.+...+-++.-+..+..+-+--.- ....|..+++.+...++.+ -|||. +.++.
T Consensus 16 ~SRLllGTgky~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~--------LPNTaGc~taeEAv~ 87 (262)
T COG2022 16 DSRLLLGTGKYPSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIPLGVTL--------LPNTAGCRTAEEAVR 87 (262)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCEE--------CCCCCCCCCHHHHHH
T ss_conf 315887247899989999999972786699998862157888530887741138676--------787645588999999
Q ss_pred H---HCC-CCCEEEE--EEC-----CCH---HHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHHHH
Q ss_conf 5---215-6750899--724-----604---677776530235531046664147776---8876520121048876544
Q gi|254780453|r 85 H---IAN-MGVAMLT--VHA-----YPQ---TMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVRMR 147 (238)
Q Consensus 85 ~---~~~-~g~d~iT--vH~-----~~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~~~ 147 (238)
. ..+ .+-+++- |++ .|+ .++++....++ +-. |.--|+-|. +.+.+.|+..-+.
T Consensus 88 tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~e-GF~---VlPY~~dD~v~arrLee~GcaavMP------ 157 (262)
T COG2022 88 TARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKE-GFV---VLPYTTDDPVLARRLEEAGCAAVMP------ 157 (262)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCE---EEECCCCCHHHHHHHHHCCCEEECC------
T ss_conf 999999970698489999368765488757899999999867-988---8503688789999998649668633------
Q ss_pred HHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHH
Q ss_conf 54211024-43111341034455442024403551011357865798400369899996599899998533088888999
Q gi|254780453|r 148 AVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSA 226 (238)
Q Consensus 148 a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~a 226 (238)
++...| --| ++.|.-++.+++.. +-.+++--|||.+.+ .-+|++.|+|-+.+--+|.+|+||...
T Consensus 158 --l~aPIGSg~G-~~n~~~l~iiie~a-~VPviVDAGiG~pSd----------Aa~aMElG~DaVL~NTAiA~A~DPv~M 223 (262)
T COG2022 158 --LGAPIGSGLG-LQNPYNLEIIIEEA-DVPVIVDAGIGTPSD----------AAQAMELGADAVLLNTAIARAKDPVAM 223 (262)
T ss_pred --CCCCCCCCCC-CCCHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHHCCCEEEHHHHHHCCCCHHHH
T ss_conf --5665667867-57889999999738-998898679897668----------899986055432325676603786999
Q ss_pred HHHHHHHHH
Q ss_conf 999999866
Q gi|254780453|r 227 AQEFQRAIS 235 (238)
Q Consensus 227 a~~i~~~i~ 235 (238)
|+.|.-.+.
T Consensus 224 A~Af~~Av~ 232 (262)
T COG2022 224 ARAFALAVE 232 (262)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 123
>PRK08104 consensus
Probab=93.42 E-value=0.7 Score=26.10 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=107.9
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH--HHH
Q ss_conf 23115789889996079989999999973-885228998689984255899999985154667877640424678--987
Q gi|254780453|r 6 IIDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV--TAA 82 (238)
Q Consensus 6 ~~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv--~~~ 82 (238)
.-++.+++|++--+-..+.+++..+++.+ ..-+..+++-+. .....+.|+++++....+. + -.| || ...
T Consensus 8 ~~~ll~~~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlr--t~~a~~~I~~l~~~~p~~~----v-GaG-TV~~~e~ 79 (212)
T PRK08104 8 AEDIFTRGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLR--TPCALEAIRAIAKEVPEAI----V-GAG-TVLNPQQ 79 (212)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHHCCCCE----E-EEE-ECCCHHH
T ss_conf 999997498689997799999999999999879988999688--8149999999998689856----8-542-0267999
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 765215675089972460467777653023553-104666414777688765201210488765445421102443111-
Q gi|254780453|r 83 IEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV- 160 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV- 160 (238)
++.+.+.|++++. +|+.-.+..+.+++.+. .+=||. |- .+. ..|.+.|++=+-
T Consensus 80 ~~~ai~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---sEi-----------------~~A~~~G~~~vKl 134 (212)
T PRK08104 80 LAEVTEAGAQFAI---SPGLTEELLKAATEGTIPLIPGIS--TV---SEL-----------------MLGMDYGLTEFKF 134 (212)
T ss_pred HHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEE
T ss_conf 9999985999998---489999999999982997656769--99---999-----------------9999879997997
Q ss_pred ------CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC-----CCCCHHHHHHH
Q ss_conf ------3410344554420244035510113578657984003698999965998999985330-----88888999999
Q gi|254780453|r 161 ------CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV-----RAADPVSAAQE 229 (238)
Q Consensus 161 ------~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~-----~a~dP~~aa~~ 229 (238)
-.+.-++.++.-++.-.++-|.||.+. +..+-++.|+=..+.|..+. +++|-.+-.++
T Consensus 135 FPA~~~gG~~~lkal~~p~p~~~f~ptGGV~~~-----------N~~~yl~~~~v~~vgGS~l~~~~~i~~~d~~~I~~~ 203 (212)
T PRK08104 135 FPAEANGGVKALQAISGPFSQIRFCPTGGITPA-----------NYRDYLALKSVLCIGGSWLVPADALEAGDWDRITKL 203 (212)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHH-----------HHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHH
T ss_conf 876213749999998555899818964898988-----------999998079879998835389999874899999999
Q ss_pred HHHHHH
Q ss_conf 999866
Q gi|254780453|r 230 FQRAIS 235 (238)
Q Consensus 230 i~~~i~ 235 (238)
-++.+.
T Consensus 204 a~~~v~ 209 (212)
T PRK08104 204 AKEAVE 209 (212)
T ss_pred HHHHHH
T ss_conf 999999
No 124
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.42 E-value=0.16 Score=30.29 Aligned_cols=190 Identities=21% Similarity=0.323 Sum_probs=101.2
Q ss_pred CCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHHHHHC-CCHHHHHHHHHHCHHHHHHHHHCCHHHHH-----HHHHH
Q ss_conf 898899960-799899999999738852289986899842-55899999985154667877640424678-----98776
Q gi|254780453|r 12 KKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYHLSFS-GGLELARDLISDGKSVFLDMKLFDIGSSV-----TAAIE 84 (238)
Q Consensus 12 k~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~l~~~-~G~~~i~~l~k~~~~If~D~K~~DIpnTv-----~~~v~ 84 (238)
+|||++.-- +++.+...+-++.-+..+..+-+--.-+.. ....+++.+... |+.=-|||. ..+++
T Consensus 84 ~SRL~~GTgky~s~~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~--------~~~~LPNTAGc~ta~eAvr 155 (327)
T PRK11840 84 SSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPK--------KYTYLPNTAGCFTAEDAVR 155 (327)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHCCCC--------CCEECCCCCCCCCHHHHHH
T ss_conf 80178765899999999999998589769999974237888960577641802--------7779985657788999999
Q ss_pred ------HHCCCCCEEEE--EEC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHHHCCCCHHHHHH
Q ss_conf ------52156750899--724-----60---4677776530235531046664147776---88765201210488765
Q gi|254780453|r 85 ------HIANMGVAMLT--VHA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDD---FDLRESGYEKDISDMVR 145 (238)
Q Consensus 85 ------~~~~~g~d~iT--vH~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~---~~l~~~g~~~~~~~~v~ 145 (238)
.+. +-+++- |++ .| ++++++....++ +-.++ .-++-|. +.|.+.|+..-+.
T Consensus 156 ~a~lARe~~--~t~~iKLEVi~D~~tL~Pd~~etl~Aae~Lv~e-GF~Vl---pY~~dDpv~akrLed~Gc~avMP---- 225 (327)
T PRK11840 156 TLRLAREAG--GWDLVKLEVLGDQKTLYPDMVETLKAAEVLVKE-GFQVM---VYCSDDPIAAKRLEDAGAVAVMP---- 225 (327)
T ss_pred HHHHHHHHC--CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEE---EEECCCHHHHHHHHHCCCEEEEE----
T ss_conf 999999855--998589998079766799858999999999978-98898---87169868999998759838862----
Q ss_pred HHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHH
Q ss_conf 4454211024-431113410344554420244035510113578657984003698999965998999985330888889
Q gi|254780453|r 146 MRAVQARDIG-MGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPV 224 (238)
Q Consensus 146 ~~a~~a~~~g-~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~ 224 (238)
++...| =.|+. -+..++.+++.. +-.+++--||+.+.+ .-.|++.|+|-+.+--+|.+|+||.
T Consensus 226 ----lgsPIGSg~Gi~-n~~~i~~i~e~~-~vpvivDAGiG~pS~----------A~~aMElG~daVL~NTAiA~a~~Pv 289 (327)
T PRK11840 226 ----LGAPIGSGLGIQ-NPYTIRLIVEGA-KVPVLVDAGVGTASD----------AAVAMELGCDGVLMNTAIAEAKNPI 289 (327)
T ss_pred ----CCCCCCCCCCCC-CHHHHHHHHHHC-CCCEEEECCCCCHHH----------HHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf ----245234788868-999999999736-997899579898789----------9999863666666336767269979
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999866
Q gi|254780453|r 225 SAAQEFQRAIS 235 (238)
Q Consensus 225 ~aa~~i~~~i~ 235 (238)
..|+.|+..+.
T Consensus 290 ~MA~A~~~av~ 300 (327)
T PRK11840 290 LMARAMKLAVE 300 (327)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 125
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=93.32 E-value=0.42 Score=27.54 Aligned_cols=175 Identities=20% Similarity=0.255 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE-CC-
Q ss_conf 98999999997388-5228998689984255899999985154667877640424678987765215675089972-46-
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH-AY- 99 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH-~~- 99 (238)
+.++=+++++.|.+ -|..|++|.|-....-.+.++.+.+++..=.+-.|+-==-.-+...++.+.++++|.+-|- |.
T Consensus 18 s~e~r~eIAkALdd~GV~~IE~g~P~vS~d~~~~ik~i~~L~~~G~l~a~iv~Hsra~~~D~~~a~~~~Vd~i~~~~G~S 97 (355)
T TIGR02146 18 STEQRVEIAKALDDIGVDYIEVGHPAVSPDIRKDIKLIASLGKEGLLKAKIVTHSRAVLDDIEVAVETEVDRIDVFFGVS 97 (355)
T ss_pred CHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf 77789999876323181057248875547789999999833888760035567789999998776422786578743005
Q ss_pred ------------CHHH---HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-------
Q ss_conf ------------0467---777653023553104666414777688765201210488765445421102443-------
Q gi|254780453|r 100 ------------PQTM---RSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMG------- 157 (238)
Q Consensus 100 ------------~~~l---~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~------- 157 (238)
+..+ .+.++.++..++.+=. =.|+ +|. .=...+++ .+-.+.|.+.|+|
T Consensus 98 ~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~V--RFta---ED~----~R~d~~~L-~~v~k~a~~~~vDRVsiADT 167 (355)
T TIGR02146 98 KLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKV--RFTA---EDT----FRSDLDDL-LKVYKTAKEAGVDRVSIADT 167 (355)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE--EECC---CCC----CHHHHHHH-HHHHHHHHHCCCCEEEEECC
T ss_conf 88851025778899999999999999724882478--8647---888----51218999-99999997618885675134
Q ss_pred -CCCCCCHHHHHHHHHHCCCCEEEE-ECCCCCC-CCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf -111341034455442024403551-0113578-657984003698999965998999
Q gi|254780453|r 158 -GIVCSPQEVRMVREIVGHNMVIVT-PGIRMLG-SATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 158 -GvV~s~~ei~~ir~~~~~~~~~it-PGI~~~~-~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
|+.. +.++++.+ +...-++ |||...- .=+|-+-=+++.-.|++.||+.+=
T Consensus 168 vG~~~----P~~~y~L~-~~v~~~VGpg~~~~~H~HND~G~A~ANA~~AiEGGA~~vd 220 (355)
T TIGR02146 168 VGVAT----PRRVYELV-RKVKRVVGPGVDIEIHAHNDLGLAIANALAAIEGGATVVD 220 (355)
T ss_pred CCCCC----CHHHHHHH-HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
T ss_conf 36788----06899999-9998640887643563017577999999987530880898
No 126
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.31 E-value=0.36 Score=27.98 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCHHHH--HHHHHCCHHH-HHHHHHHHHCCCCCEEEEEEC
Q ss_conf 98999999997388-5228998689984255899999985154667--8776404246-789877652156750899724
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGKSVF--LDMKLFDIGS-SVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~~If--~D~K~~DIpn-Tv~~~v~~~~~~g~d~iTvH~ 98 (238)
+.++..+++++... .+..+=+...+.. ...+.+...+.++. .|+-+..-+. +....++.+.+.|+|.+-+..
T Consensus 11 t~~~i~~~~~~a~~~~~~av~v~p~~v~----~~~~~l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GAdeid~v~ 86 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNPGYVR----LAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI 86 (201)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECHHHHH----HHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999998629829998899999----999980899983899958899999777999999999990999899740
Q ss_pred CCH---------H---HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-----
Q ss_conf 604---------6---77776530235531046664147776887652012104887654454211024431113-----
Q gi|254780453|r 99 YPQ---------T---MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC----- 161 (238)
Q Consensus 99 ~~~---------~---l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~----- 161 (238)
.-+ + +++.++.+ ..+.-+ -|..-+..- +-.+...+..+.+.++|.+.+=+
T Consensus 87 ~~~~~~~~~~~~~~~ei~~v~~~~-~~g~~~-kvi~e~~~l-----------~~~~~i~~a~~~~~~~GadfvKtstG~~ 153 (201)
T cd00945 87 NIGSLKEGDWEEVLEEIAAVVEAA-DGGLPL-KVILETRGL-----------KTADEIAKAARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHH-CCCCCE-EEEECCCCC-----------CCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 567775668899999999999973-579837-999616778-----------9999999999999980998798558878
Q ss_pred ----CCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf ----410344554420244-0355101135786579840036989999659989999
Q gi|254780453|r 162 ----SPQEVRMVREIVGHN-MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 162 ----s~~ei~~ir~~~~~~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
++..++.+++.+++. .+..+.|||. +....+.+.+||+-+..
T Consensus 154 ~~~at~~~v~~m~~~~~~~~~vk~sGGi~~----------~~~a~~~l~aGa~~igt 200 (201)
T cd00945 154 GGGATVEDVKLMKEAVGGRVGVKAAGGIKT----------LEDALAAIEAGADGIGT 200 (201)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEECCCCCCC----------HHHHHHHHHHCCCEEEC
T ss_conf 898999999999998287863863589799----------99999999828653537
No 127
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=93.08 E-value=0.26 Score=28.87 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHCCC-CCEEEECHHHHHCCCHHHHH-HHHHHCHHH--HHHHHHCCHHHHHH-HHHHHHCCCCCEEEEEE
Q ss_conf 989999999973885-22899868998425589999-998515466--78776404246789-87765215675089972
Q gi|254780453|r 23 TVKEAERIVSILSDT-VSFYKIGYHLSFSGGLELAR-DLISDGKSV--FLDMKLFDIGSSVT-AAIEHIANMGVAMLTVH 97 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~-i~~iKig~~l~~~~G~~~i~-~l~k~~~~I--f~D~K~~DIpnTv~-~~v~~~~~~g~d~iTvH 97 (238)
+.++..++.++-..| +..+=+...+. ...+ .|+..+..+ ..+|=++.-+.-+. ..++.+.+.|+|=+-+-
T Consensus 20 T~~~i~~lc~~A~~~~~aaVCV~P~~V-----~~a~~~L~~s~v~v~tVigFP~G~~~~~~K~~E~~~ai~~GAdEiD~V 94 (221)
T PRK00507 20 TEEDIDKLCEEAKEYGFASVCVNPSYV-----KLAAELLKGSDVKVCTVIGFPLGASTTAVKAFEAKDAIANGADEIDMV 94 (221)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECHHHH-----HHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999987994899898999-----999998448998655781369999957689999999998599877740
Q ss_pred CC------C------HHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC------C
Q ss_conf 46------0------4677776530235531046664147-77688765201210488765445421102443------1
Q gi|254780453|r 98 AY------P------QTMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGYEKDISDMVRMRAVQARDIGMG------G 158 (238)
Q Consensus 98 ~~------~------~~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~------G 158 (238)
.. + ..+++.++++.+...|++- =|. ++ ++...+....+.++|.+ |
T Consensus 95 in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIl---Et~~Lt-------------~~ei~~a~~~~~~aGadfvKTSTG 158 (221)
T PRK00507 95 INIGALKSGDWDAVEADIRAVVEAAGGKVLKVII---ETCLLT-------------DEEKVKACEICKEAGADFVKTSTG 158 (221)
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCCC-------------HHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 2599997584889999999999872767369997---446599-------------999999999999829787860588
Q ss_pred CC---CCCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 11---341034455442024403-5510113578657984003698999965998999
Q gi|254780453|r 159 IV---CSPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 159 vV---~s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
+. +++.+++.+|+.+++..- ..+.|||-. .+..+.+++|||-|=
T Consensus 159 f~~~gat~e~v~~m~~~~~~~~giKasGGIrt~----------~~a~~~l~aGa~riG 206 (221)
T PRK00507 159 FSTGGATVEDVKLMRETVGPRVGVKASGGIRTL----------EDALAMIEAGATRLG 206 (221)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCH----------HHHHHHHHHCCHHCC
T ss_conf 788998999999999972878638677898999----------999999982751321
No 128
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.08 E-value=0.34 Score=28.15 Aligned_cols=170 Identities=21% Similarity=0.345 Sum_probs=89.6
Q ss_pred CCCCCEEEEEECC------CHHHHHHHHHH-HCCCCCEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHHHC--C----H
Q ss_conf 5789889996079------98999999997-38852289986899842558999999851-54667877640--4----2
Q gi|254780453|r 10 DEKKRLVVGLDLP------TVKEAERIVSI-LSDTVSFYKIGYHLSFSGGLELARDLISD-GKSVFLDMKLF--D----I 75 (238)
Q Consensus 10 ~kk~~livALD~~------~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K~~--D----I 75 (238)
.-|..|+|+|--. +.+-..+++.. ...-..++-++ |.+-|+.+++. +.||+-=-|-. | |
T Consensus 6 ~lkg~LIVSCQA~~~ePl~~~~im~~mA~Aa~~gGA~giR~~-------~~~dI~aIk~~v~lPIIGi~K~~~~~s~VyI 78 (219)
T cd04729 6 QLKGGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHCCCCCEEEEEECCCCCCCEEE
T ss_conf 756997999618988996877899999999997896399808-------9889999983289988999956889998456
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC----C--HHHHHHHHHHCCC-CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 467898776521567508997246----0--4677776530235-53104666414777688765201210488765445
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAY----P--QTMRSAVSVVRDT-GICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~----~--~~l~~~~~~~~~~-~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
--|+ ..+..+.+.|+|++-+-+- | ..+.+.++..+.. +..+++- .++ ++ -+
T Consensus 79 TPt~-~ev~~l~~aGadiIA~DaT~R~RP~g~~l~~~i~~i~~~~~~l~MAD--~st--------------~e-----e~ 136 (219)
T cd04729 79 TPTI-EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMAD--IST--------------LE-----EA 136 (219)
T ss_pred CCCH-HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEE--CCC--------------HH-----HH
T ss_conf 6889-99999998599999994678879899789999999999869778875--488--------------99-----99
Q ss_pred HHHHHCCCC-------CCC-----CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH---HHHCCCCEEEE
Q ss_conf 421102443-------111-----341034455442024403551011357865798400369899---99659989999
Q gi|254780453|r 149 VQARDIGMG-------GIV-----CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET---ALKYGASHIVV 213 (238)
Q Consensus 149 ~~a~~~g~~-------GvV-----~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~---Ai~~GaD~iVV 213 (238)
..|.++|+| |.. ..+.++..+++.... + =.|=| ++| |+.||++ |++.||+.+||
T Consensus 137 ~~A~~~G~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~-~--~~pvI-aEG-------ri~tPe~a~~a~~~GA~aVVV 205 (219)
T cd04729 137 LNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-L--GIPVI-AEG-------RINSPEQAAKALELGADAVVV 205 (219)
T ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-C--CCCEE-EEC-------CCCCHHHHHHHHHCCCCEEEE
T ss_conf 999984998997021456778788999878999999997-5--99399-706-------989999999999839989998
Q ss_pred CCHHCC
Q ss_conf 853308
Q gi|254780453|r 214 SRPIVR 219 (238)
Q Consensus 214 GR~I~~ 219 (238)
|.+||+
T Consensus 206 GsAITr 211 (219)
T cd04729 206 GSAITR 211 (219)
T ss_pred CCCCCC
T ss_conf 954388
No 129
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.90 E-value=0.45 Score=27.36 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=69.0
Q ss_pred HCCHHHHHHH---HHHHHCCCCCEEEEEECCCHH-H--------------------------HHHHHHHC----CC--CC
Q ss_conf 4042467898---776521567508997246046-7--------------------------77765302----35--53
Q gi|254780453|r 72 LFDIGSSVTA---AIEHIANMGVAMLTVHAYPQT-M--------------------------RSAVSVVR----DT--GI 115 (238)
Q Consensus 72 ~~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~~-l--------------------------~~~~~~~~----~~--~~ 115 (238)
..||...+.. +.+.+.+.|+|.|-+|+.-|. + .+.+++.+ +. .-
T Consensus 136 ~~eI~~ii~~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~d 215 (353)
T cd04735 136 HEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKD 215 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999998399989975465759998539988998473679889998899999999999854005897
Q ss_pred CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH---------------HHHHHHHHHCC-CCEE
Q ss_conf 1046664147776887652012104887654454211024431113410---------------34455442024-4035
Q gi|254780453|r 116 CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ---------------EVRMVREIVGH-NMVI 179 (238)
Q Consensus 116 ~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~---------------ei~~ir~~~~~-~~~~ 179 (238)
.+++| -++..+..+.|.+ .++. ..++..-.+.|+|-+-+|.. ....+++.... -.++
T Consensus 216 f~vgv----Ris~~e~~~~G~~--~~e~-~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvi 288 (353)
T cd04735 216 FILGY----RFSPEEPEEPGIR--MEDT-LALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLI 288 (353)
T ss_pred CEEEE----ECCHHHCCCCCCC--HHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 33675----1586541479999--9999-999999984799889960377667776677753558999999967898099
Q ss_pred EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHH
Q ss_conf 5101135786579840036989999659989999853308888899999
Q gi|254780453|r 180 VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 180 itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~ 228 (238)
.+.||+-+. ..+++++.|+|++-+||+.+...|-.+.++
T Consensus 289 ~~G~i~~~~----------~ae~~l~~gaD~V~~gR~liadPd~~~K~~ 327 (353)
T cd04735 289 AVGSINTPD----------DALEALETGADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred EECCCCCHH----------HHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 989999899----------999999869982998699997931999998
No 130
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=92.87 E-value=0.29 Score=28.62 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHCCC-CCEEEECHHHHHCCCHHHHHH-HHHHCHHH--HHHHHHCCHHHHH-HHHHHHHCCCCCEEEEEE
Q ss_conf 989999999973885-228998689984255899999-98515466--7877640424678-987765215675089972
Q gi|254780453|r 23 TVKEAERIVSILSDT-VSFYKIGYHLSFSGGLELARD-LISDGKSV--FLDMKLFDIGSSV-TAAIEHIANMGVAMLTVH 97 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~-i~~iKig~~l~~~~G~~~i~~-l~k~~~~I--f~D~K~~DIpnTv-~~~v~~~~~~g~d~iTvH 97 (238)
+.++..++.++-..| +..+=+...+. +..++ |+..+..+ ..+|=++.-+..+ ...++.+.+.|+|=+-+-
T Consensus 15 T~~~i~~l~~~A~~~~~aaVcV~p~~v-----~~a~~~L~~s~v~v~tvigFP~G~~~~~~K~~E~~~ai~~GAdEiD~V 89 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCFV-----PLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMV 89 (203)
T ss_pred CHHHHHHHHHHHHHHCCEEEEECHHHH-----HHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999875983999899999-----999998448997267771689998868789999999998299877751
Q ss_pred CC------C--H----HHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 46------0--4----677776530235531046664147-7768876520121048876544542110244311-----
Q gi|254780453|r 98 AY------P--Q----TMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI----- 159 (238)
Q Consensus 98 ~~------~--~----~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv----- 159 (238)
.. + + .+++..+...+...|++- =|. ++ ++...+...++.++|++-+
T Consensus 90 in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIl---Et~~L~-------------~~ei~~a~~~a~~aGadfvKTSTG 153 (203)
T cd00959 90 INIGALKSGDYEAVYEEIAAVVEACGGAPLKVIL---ETGLLT-------------DEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCC-------------HHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 2399996070999999999998762888269997---446599-------------999999999999829788971588
Q ss_pred -C---CCCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEE
Q ss_conf -1---341034455442024403-551011357865798400369899996599899
Q gi|254780453|r 160 -V---CSPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHI 211 (238)
Q Consensus 160 -V---~s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 211 (238)
. +++.+++.+++.+++..- ..+.|||-. ....+-+.+|++-|
T Consensus 154 ~~~~gat~e~v~~m~~~~~~~~giKasGGIrt~----------~~a~~~l~aGa~ri 200 (203)
T cd00959 154 FGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTL----------EDALAMIEAGATRI 200 (203)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCH----------HHHHHHHHHCCHHE
T ss_conf 688998999999999983878607715897999----------99999998184122
No 131
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.67 E-value=0.28 Score=28.71 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=28.7
Q ss_pred CHHH---HHHCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 9899---9965998999985330888889999999998
Q gi|254780453|r 199 TPET---ALKYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 199 tp~~---Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
||.+ ..+.|+|-+.||-++.+++||.++.+++...
T Consensus 222 ~~~d~~~l~~~G~davLIGeslm~~~dp~~~l~~L~~~ 259 (261)
T PRK00278 222 TPEDLKRLAKAGADAFLVGESLMRADDPGAALRELFGG 259 (261)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHC
T ss_conf 99999999977999999897876799989999999707
No 132
>KOG0538 consensus
Probab=92.43 E-value=0.22 Score=29.36 Aligned_cols=63 Identities=33% Similarity=0.526 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCCCCCCCH----------HHHHHHH---HH-CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEE
Q ss_conf 4454211024431113410----------3445544---20-24403551011357865798400369899996599899
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQ----------EVRMVRE---IV-GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHI 211 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~----------ei~~ir~---~~-~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 211 (238)
.-+..|.+.|++|+|.|-| -+..+.+ .+ +.=...+-.|||- |.+ .-.|+..||--+
T Consensus 235 eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~-G~D---------VlKALALGAk~V 304 (363)
T KOG0538 235 EDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRR-GTD---------VLKALALGAKGV 304 (363)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-CHH---------HHHHHHCCCCEE
T ss_conf 8799999808865998578753257664118879999998628547997267335-427---------999985167368
Q ss_pred EECCHHC
Q ss_conf 9985330
Q gi|254780453|r 212 VVSRPIV 218 (238)
Q Consensus 212 VVGR~I~ 218 (238)
-|||||.
T Consensus 305 fiGRP~v 311 (363)
T KOG0538 305 FIGRPIV 311 (363)
T ss_pred EECCCCE
T ss_conf 8567210
No 133
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=92.43 E-value=0.47 Score=27.21 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHH
Q ss_conf 034455442024403551-011357865798400369899996599899998533088888999999
Q gi|254780453|r 164 QEVRMVREIVGHNMVIVT-PGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 164 ~ei~~ir~~~~~~~~~it-PGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~ 229 (238)
+....+...++++...|+ -||+-.. ......+.|+|-+.||-++.+++||.++.++
T Consensus 197 ~~t~~L~~~ip~~~~~VsESGI~~~~----------di~~l~~~G~~~~LIGe~lm~~~dp~~~l~~ 253 (254)
T pfam00218 197 NTTRRLAPMVPEDVLLVAESGISTPE----------DVEKLAKHGANAFLVGESLMRAPDVRAAIRE 253 (254)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHH----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHC
T ss_conf 99999995589898799838999999----------9999998799999989687579998999960
No 134
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=92.31 E-value=0.42 Score=27.55 Aligned_cols=126 Identities=22% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECC--
Q ss_conf 998999999997388522899868998425589999998515466787764042467898776521567508997246--
Q gi|254780453|r 22 PTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAY-- 99 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~-- 99 (238)
.+.+|.++.+++++-.+..+-=|=||+...=.++++.++++++.+.+-- =|.-..+.++.+...+...+.||.-
T Consensus 59 Ls~ee~~~~~~e~Gap~V~itGGEPLLr~dl~eIv~~a~~~g~~v~l~T----NG~Ll~k~i~~~~~~~~~~~~VsLDG~ 134 (318)
T TIGR03470 59 LSVEECLRAVDECGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCT----NALLLEKKLDKFEPSPYLTFSVHLDGL 134 (318)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEC----CHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999999999984997899518874556479999999997599799977----552009999998518883699980178
Q ss_pred ----------CHHHHHHHHH---HCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ----------0467777653---023553104666414777688765201210488765445421102443111341
Q gi|254780453|r 100 ----------PQTMRSAVSV---VRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSP 163 (238)
Q Consensus 100 ----------~~~l~~~~~~---~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~ 163 (238)
+|....++++ ++..+..+-.-+.+.. +.+ .+.+..+...+.+.|++|+..||
T Consensus 135 ~e~HD~~r~~~G~Fd~av~aIr~ak~~G~~V~iN~Tvf~--~~n----------~~~i~~~~d~~~~lgVdgi~isp 199 (318)
T TIGR03470 135 REHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFN--DTD----------PEEVAEFFDYLTDLGVDGMTISP 199 (318)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC--CCC----------HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 788668871797799999999999986994679989706--899----------99999999999876997389766
No 135
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.20 E-value=0.15 Score=30.46 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCCCC--CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 544542110244311134--103445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 145 RMRAVQARDIGMGGIVCS--PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 145 ~~~a~~a~~~g~~GvV~s--~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
.-+..+|...|.|||-.. ...++.+|+.++++.++ |+.-. .+.+ -..+|-+.||||+-+|. ++.
T Consensus 77 ND~~dlA~~~gADGVHlGq~d~~~~~aR~~lg~~~II---G~~~~-~s~~------~A~~A~e~GADYv~fG~-~~~ 142 (221)
T PRK06512 77 AGDTRIAGRVKADGLHIEGNAAALAEAIEKHAPKMIV---GFGNL-RDRH------GAMEVGELQPDYLFFGK-LGA 142 (221)
T ss_pred CCCHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEE---EEECC-CCHH------HHHHHHHCCCCEEEECC-CCC
T ss_conf 8979999970998665268753199999984788678---64057-8899------99999973998576578-788
No 136
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.17 E-value=1 Score=25.00 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHCC-CCCEEEECHHH-----------HHCCCHHHHHHHHHHC--HHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 98999999997388-52289986899-----------8425589999998515--4667877640424678987765215
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIGYHL-----------SFSGGLELARDLISDG--KSVFLDMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig~~l-----------~~~~G~~~i~~l~k~~--~~If~D~K~~DIpnTv~~~v~~~~~ 88 (238)
+.++.+++++.+.. -|..+++|+.- ......+.++...+.- .++ .-+-+.++++ ...++.+.+
T Consensus 22 s~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~-~~l~~pg~~~--~~dl~~a~~ 98 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKV-AVLLLPGIGT--VHDLKAAYD 98 (333)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-EEEECCCCCC--HHHHHHHHH
T ss_conf 9999999999999719898996068888887433578889949999999987424805-6996478666--999999996
Q ss_pred CCCEEEEE--ECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-----
Q ss_conf 67508997--2460-467777653023553104666414777688765201210488765445421102443111-----
Q gi|254780453|r 89 MGVAMLTV--HAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV----- 160 (238)
Q Consensus 89 ~g~d~iTv--H~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV----- 160 (238)
.|++.+-+ |+.. ...+..++.+++.+..+.+...+++..+. +.+.+.++.+.+.|++.+.
T Consensus 99 ~gv~~vri~~~~te~d~~~~~i~~ak~~G~~v~~~~~~s~~~~~------------e~l~~~a~~~~~~Gad~I~i~DT~ 166 (333)
T TIGR03217 99 AGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPP------------EKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCH------------HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 69997898631667888999999999769809999750568999------------999999999985699999975964
Q ss_pred --CCCHHHH----HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf --3410344----554420244035510113578657984003698999965998999
Q gi|254780453|r 161 --CSPQEVR----MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 161 --~s~~ei~----~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
..|++++ .+|+.++++.-+ |+... .|-+.=+.+--.|+++|++++=
T Consensus 167 G~~~P~~v~~~v~~l~~~~~~~i~i---g~H~H---NnlGlAvANslaAi~aGa~~VD 218 (333)
T TIGR03217 167 GAMLPDDVRDRVRALKAVLKPETQV---GFHAH---HNLSLAVANSIAAIEAGATRID 218 (333)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEE---EEEEE---CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 4689999999999999862997548---89861---7877299999999981999997
No 137
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=92.08 E-value=0.13 Score=30.77 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHCC------CCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHH
Q ss_conf 341034455442024------40355101135786579840036989999659989999853308888899999999
Q gi|254780453|r 161 CSPQEVRMVREIVGH------NMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQ 231 (238)
Q Consensus 161 ~s~~ei~~ir~~~~~------~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~ 231 (238)
.+|+-+..+|+.+++ -.+++=.|||-... .++-.++|||.+|+|-=|+++.|-.+++.++.
T Consensus 175 vpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~----------A~~~a~AgAD~~VtGnvie~~~nv~~k~~~~~ 241 (242)
T TIGR01768 175 VPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEK----------ARKLAEAGADVVVTGNVIEEDDNVVDKALEII 241 (242)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH----------HHHHHHCCCCEEEEEEEEECCHHHHHHHHHHC
T ss_conf 74589999998741047886325784076478899----------99995345989998468751637899999971
No 138
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=92.07 E-value=1.1 Score=24.93 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred HHHHHHHHHH----CHHHHH-HHHHCC---HHHHHHHHHHHHCCCCCEEEEEECCC------HHHHHHHHHHCCCCC--C
Q ss_conf 8999999851----546678-776404---24678987765215675089972460------467777653023553--1
Q gi|254780453|r 53 LELARDLISD----GKSVFL-DMKLFD---IGSSVTAAIEHIANMGVAMLTVHAYP------QTMRSAVSVVRDTGI--C 116 (238)
Q Consensus 53 ~~~i~~l~k~----~~~If~-D~K~~D---IpnTv~~~v~~~~~~g~d~iTvH~~~------~~l~~~~~~~~~~~~--~ 116 (238)
+..+++|+.+ |.|+|. .-+=.+ ==.|+..+++.+...+.|.+.|=..| .+|++..+..+..++ -
T Consensus 145 PAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~Ei 224 (439)
T TIGR00959 145 PAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEI 224 (439)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 78999999976752887110047888988778999999999997489789972675125559999999999888688705
Q ss_pred EEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH-HHHCCCCCCCCCCHH-------HHHHHHHHCCCCEEEEECCCCC
Q ss_conf 0466641477768876520121048876544542-110244311134103-------4455442024403551011357
Q gi|254780453|r 117 LLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ-ARDIGMGGIVCSPQE-------VRMVREIVGHNMVIVTPGIRML 187 (238)
Q Consensus 117 il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~-a~~~g~~GvV~s~~e-------i~~ir~~~~~~~~~itPGI~~~ 187 (238)
||+|=.|| . ++.| ..|+. -.+.|+.|+|-|-.| +=-+|.++|.-.+++.-|=+++
T Consensus 225 LlVvDaM~---G------------QdAv-n~A~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~ 287 (439)
T TIGR00959 225 LLVVDAMT---G------------QDAV-NTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIE 287 (439)
T ss_pred EECCHHCC---H------------HHHH-HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 41220102---1------------6999-99986366001354788547566057899999999689618884177723
No 139
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.07 E-value=0.94 Score=25.27 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCCEEEE-EECCCHHHHHHHHHHHC-CCCCEEEECHH-HHHCCCHHHHHHHHHH-CHHHHH-HHHHCCHHH
Q ss_conf 4112311578988999-60799899999999738-85228998689-9842558999999851-546678-776404246
Q gi|254780453|r 3 AGLIIDVDEKKRLVVG-LDLPTVKEAERIVSILS-DTVSFYKIGYH-LSFSGGLELARDLISD-GKSVFL-DMKLFDIGS 77 (238)
Q Consensus 3 ~~~~~~~~kk~~livA-LD~~~~~e~l~l~~~l~-~~i~~iKig~~-l~~~~G~~~i~~l~k~-~~~If~-D~K~~DIpn 77 (238)
.+.+-|+++++|=--- ....+. .++++.-. ...+++=+-++ -|.....+.+...++. ..||.- |+= .|
T Consensus 11 ~~iIaEiKr~SPS~G~i~~~~d~---~~~A~~Y~~~GA~aiSVLTe~~~F~Gs~~~L~~v~~~~~~PiLrKDFI-id--- 83 (217)
T cd00331 11 LGVIAEVKRASPSKGLIREDFDP---VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFI-ID--- 83 (217)
T ss_pred CEEEEEEECCCCCCCCCCCCCCH---HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCC-CC---
T ss_conf 77997622699998856788999---999999997798189995577777988999999998479986742321-76---
Q ss_pred HHHHHHHHHCCCCCEEEEEEC--CC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 789877652156750899724--60-467777653023553104666414777688765201210488765445421102
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHA--YP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDI 154 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~--~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~ 154 (238)
..++.....+|||++-..+ .+ .-+++..+.+...+...+. + -.+.++++..-.. .+
T Consensus 84 --~~QI~ea~~~GAdaiLLI~~~L~~~~l~~l~~~a~~lgl~~Lv--E--vh~~~El~~a~~~---------------~a 142 (217)
T cd00331 84 --PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLV--E--VHDEEELERALAL---------------GA 142 (217)
T ss_pred --HHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEE--E--ECCHHHHHHHHHC---------------CC
T ss_conf --9999999981998787988854999999999999994982798--8--5899999999957---------------99
Q ss_pred CCCCC--------CCCCHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHH
Q ss_conf 44311--------1341034455442024403551-01135786579840036989999659989999853308888899
Q gi|254780453|r 155 GMGGI--------VCSPQEVRMVREIVGHNMVIVT-PGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVS 225 (238)
Q Consensus 155 g~~Gv--------V~s~~ei~~ir~~~~~~~~~it-PGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~ 225 (238)
.+.|+ -........+.+.++++...++ -||+-.. ......+.|+|-+.||.++.+++||.+
T Consensus 143 ~iIGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~~~~----------di~~l~~~G~d~~LIG~sLm~~~~p~~ 212 (217)
T cd00331 143 KIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPE----------DVKRLAEAGADAVLIGESLMRAPDPGA 212 (217)
T ss_pred CEEEECCCCCHHCEECHHHHHHHHHHCCCCCEEEECCCCCCHH----------HHHHHHHCCCCEEEECHHHHCCCCHHH
T ss_conf 8784216771230347899999996489898899827999999----------999999879999998978867999899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780453|r 226 AAQE 229 (238)
Q Consensus 226 aa~~ 229 (238)
+.++
T Consensus 213 ~l~~ 216 (217)
T cd00331 213 ALRE 216 (217)
T ss_pred HHHH
T ss_conf 9960
No 140
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.06 E-value=0.32 Score=28.30 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC------CHHHHHHHHHHHHH
Q ss_conf 554420244035510113578657984003698999965998999985330888------88999999999866
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA------DPVSAAQEFQRAIS 235 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~------dP~~aa~~i~~~i~ 235 (238)
.+|...++-.++.+.|||-.- | .-.|+..|||.+=+|||...+- .-.+..+.++++++
T Consensus 254 e~~~~~~~~~iiasGGIR~gl-D---------i~KaLaLGA~~vgia~p~L~~l~~~g~e~~~~~l~~~~~elk 317 (351)
T PRK05437 254 EARSALPDLPIIASGGIRTGL-D---------IAKALALGADAVGLAGPFLKAALEGGVEAVIEEIEGWIEELK 317 (351)
T ss_pred HHHHHCCCCEEEEECCCCCHH-H---------HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999747998299627878789-9---------999999551077758999999985699999999999999999
No 141
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=91.82 E-value=0.16 Score=30.27 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC
Q ss_conf 76544542110244311134103--44554420244035510113578657984003698999965998999985330
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVCSPQE--VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV 218 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~s~~e--i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~ 218 (238)
.+.-+..+|...|.|||-...++ +..+|+.+|++.++ |+... +. .-...|...||||+-+| |++
T Consensus 203 IINDrvDlAlav~ADGVHLGQ~Dlpi~~aR~llG~~~iI---G~S~h--~~------ee~~~A~~~gaDYig~G-pvf 268 (345)
T PRK02615 203 IVNDRVDIALAVDADGVHLGQEDLPLAVARQLLGPEKII---GRSTT--NP------EELAKAIAEGADYIGVG-PVF 268 (345)
T ss_pred EEECCHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEE---EECCC--CH------HHHHHHHHCCCCEEEEC-CEE
T ss_conf 981969999974998775588878999999873999189---96179--99------99999986399979988-774
No 142
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=91.80 E-value=1.1 Score=24.73 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHCC-CCCEEEECHH-----------HHHCCCHHHHHHHHHHCHHHHHHHHHC--CHHHH-HHHHHHHHC
Q ss_conf 98999999997388-5228998689-----------984255899999985154667877640--42467-898776521
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIGYH-----------LSFSGGLELARDLISDGKSVFLDMKLF--DIGSS-VTAAIEHIA 87 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig~~-----------l~~~~G~~~i~~l~k~~~~If~D~K~~--DIpnT-v~~~v~~~~ 87 (238)
+.++.+++++.+.. -|..+++|+. +......+.++..++. .-..|+. -+|.. ....++.+.
T Consensus 23 s~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~----~~~aki~~l~~pg~~~~~dl~~A~ 98 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADV----VKQAKLATLLLPGIGTIEDLKMAY 98 (337)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHCCEEEEEECCCCCCHHHHHHHH
T ss_conf 9999999999999809899994478887775334678779839999999997----432837899635655588899999
Q ss_pred CCCCEEEEE--ECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC----
Q ss_conf 567508997--2460-467777653023553104666414777688765201210488765445421102443111----
Q gi|254780453|r 88 NMGVAMLTV--HAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV---- 160 (238)
Q Consensus 88 ~~g~d~iTv--H~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV---- 160 (238)
+.|++.+-| |+.. +..+..++.+++.+..+.+...++++.+ .+.+.+.++.+.+.|++.+.
T Consensus 99 ~~gv~~vria~~~tead~~~~~i~~ar~~G~~v~~~lm~s~~~~------------~e~l~~~a~~~~~~Gad~I~l~DT 166 (337)
T PRK08195 99 DAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAS------------PEKLAEQAKLMESYGAQCVYVVDS 166 (337)
T ss_pred HCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEHHCCCCC------------HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 57989799986314887799999999977993999751102489------------999999999998659999997898
Q ss_pred ---CCCHHHH----HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf ---3410344----554420244035510113578657984003698999965998999
Q gi|254780453|r 161 ---CSPQEVR----MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 161 ---~s~~ei~----~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
..|.+++ .+|+.++++..+ |+... .|-+.=+.+--.|+++||++|=
T Consensus 167 ~G~~~P~~v~~~v~~l~~~l~~~i~i---gfH~H---NnlGlAvANslaAveaGA~~ID 219 (337)
T PRK08195 167 AGALLPDDVRARVRALRAALKPDTQV---GFHGH---HNLGLGVANSLAAVEAGADRID 219 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEE---EEEEC---CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 76679999999999999864998549---99853---8867599999999980999998
No 143
>PRK01659 consensus
Probab=91.61 E-value=1.2 Score=24.60 Aligned_cols=141 Identities=12% Similarity=0.158 Sum_probs=69.3
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEEC--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 8776521567508997246----0467777653023553104666414--777688765201210488765445421102
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLT--SMDDFDLRESGYEKDISDMVRMRAVQARDI 154 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LT--S~~~~~l~~~g~~~~~~~~v~~~a~~a~~~ 154 (238)
..++.+.+.|+|-+.+-.. ++.++.+.+..... .-++++-.-- +.++..+..-+......-..........+.
T Consensus 87 e~~~~~l~~GadkViigs~a~~n~~~i~~~~~~~G~q-~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~ 165 (252)
T PRK01659 87 KDMKRLLRAGADKVSINSAAVLRPELITEGADHFGSQ-CIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIAWAKEAVRL 165 (252)
T ss_pred HHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCE-EEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 8888987448855983177752915321467646863-269999989705688689996899576777799999999976
Q ss_pred CCCCCCC---------CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHC-CCCEEEECCHHCCCC
Q ss_conf 4431113---------41034---4554420244035510113578657984003698999965-998999985330888
Q gi|254780453|r 155 GMGGIVC---------SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKY-GASHIVVSRPIVRAA 221 (238)
Q Consensus 155 g~~GvV~---------s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~-GaD~iVVGR~I~~a~ 221 (238)
|+..+++ ++.++ +.+++.+ +-.++.+.|++-.. .-.++++. +++-+++|+.++..+
T Consensus 166 g~geil~tdI~rDG~~~G~dl~l~~~i~~~~-~~PiIasGGi~~~~----------di~~l~~~~~v~gv~~g~~~~~~~ 234 (252)
T PRK01659 166 GAGEILLTSMDADGTKNGFDLRLTKAISEAV-SVPVIASGGAGNAD----------HMVEVFQKTTADAALAASIFHYGE 234 (252)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCHH----------HHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 9977999988145854768989999999868-99999991799999----------999999748982655754777799
Q ss_pred CHHHHHHHHHHH
Q ss_conf 889999999998
Q gi|254780453|r 222 DPVSAAQEFQRA 233 (238)
Q Consensus 222 dP~~aa~~i~~~ 233 (238)
.-.+.++++...
T Consensus 235 ~sl~e~k~~L~~ 246 (252)
T PRK01659 235 TSIKEVKAKLRE 246 (252)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999998
No 144
>PRK01362 putative translaldolase; Provisional
Probab=91.59 E-value=1.2 Score=24.59 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=108.6
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHH---HHHHHHHC-HHHHHHHHHCCHHHHHHHHHHHHCCCCCE
Q ss_conf 996079989999999973885228998689984255899---99998515-46678776404246789877652156750
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLEL---ARDLISDG-KSVFLDMKLFDIGSSVTAAIEHIANMGVA 92 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~---i~~l~k~~-~~If~D~K~~DIpnTv~~~v~~~~~~g~d 92 (238)
+=||.-|+++..++.+ .+.+.++=.+.-++...|... ++++.+.. .++++.. +.|=+..+....+.+.+++-+
T Consensus 3 i~lDtAd~~~i~~~~~--~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~is~ev-~~~~~~~m~~qA~~l~~~~~n 79 (214)
T PRK01362 3 FFIDTANVEEIKEANE--LGVLDGVTTNPSLIAKEGRDFKEVIKEICSIVDGPVSAEV-IALDAEGMIKEGRELAKIAPN 79 (214)
T ss_pred EEEECCCHHHHHHHHC--CCCCCEEECCHHHHHHCCCCHHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHHHCCC
T ss_conf 9997599999999864--7991569589899987599989999999873179757996-364199999999999984877
Q ss_pred EEE-EECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899-7246046777765302355310466641477768876-52012104887654454211024431113410344554
Q gi|254780453|r 93 MLT-VHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR-ESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVR 170 (238)
Q Consensus 93 ~iT-vH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~-~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ir 170 (238)
.+. |-+..+.++++.+..+ .+.++.+ |..-|..+.-+. ..|. . ++--+..+-.+.|.||+ ..++.++
T Consensus 80 v~VKIP~t~~Gl~ai~~L~~-~Gi~vn~-Tai~s~~Qa~~Aa~aga-~----yispy~gR~~d~G~Dg~----~~i~~i~ 148 (214)
T PRK01362 80 VVVKIPMTTEGLKAVKALSK-EGIKTNV-TLCFSANQALLAAKAGA-T----YVSPFVGRLDDIGTDGM----ELIEDIR 148 (214)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCCEEE-EECCCHHHHHHHHHCCC-C----EEEEECCHHHHCCCCHH----HHHHHHH
T ss_conf 69981896669999999998-4997576-64588999999987599-6----89863121865589828----9999999
Q ss_pred HHH---CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC----CCHHHHHHHHHHHHHHH
Q ss_conf 420---24403551011357865798400369899996599899998533088----88899999999986651
Q gi|254780453|r 171 EIV---GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA----ADPVSAAQEFQRAISLI 237 (238)
Q Consensus 171 ~~~---~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a----~dP~~aa~~i~~~i~~~ 237 (238)
+.+ +.+..++.-.+|-.. ...+|...|+|++-|.-.|.+. +-..+++++|.+.=+.+
T Consensus 149 ~~~~~~~~~tkIL~AS~r~~~----------~i~~a~~~G~~~iTvp~~i~~~l~~~plt~~~~~~F~~Dw~~~ 212 (214)
T PRK01362 149 EIYDNYGFETEIIAASVRHPM----------HVLEAALIGADIATIPYKVIKQLFKHPLTDKGLEKFLADWAKT 212 (214)
T ss_pred HHHHHCCCCCEEEEEECCCHH----------HHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999963998137520038899----------9999998699999839999999976933799999999999982
No 145
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=91.38 E-value=0.88 Score=25.45 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=73.3
Q ss_pred HHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 8999999851-5466787764042467898776521567508997246----0467777653023553104666414777
Q gi|254780453|r 53 LELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMD 127 (238)
Q Consensus 53 ~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~ 127 (238)
.+.++++.+. +.|+.++--+.+ ...++.+.+.|++-+.+... +.-++++.+...... -++++- ...
T Consensus 62 ~~~i~~i~~~~~~pi~vgGGIrs-----~e~~~~~l~~Ga~kvvigs~~~~~~~~~~~~~~~~g~q~-iv~siD---~k~ 132 (229)
T pfam00977 62 LDLIEEIAEEVFIPVQVGGGIRS-----LEDAERLLSAGADKVIIGTAAVKNPELIKEAAEKFGSQC-IVVAID---AKR 132 (229)
T ss_pred HHHHHHHHHHCCCCEEEECCEEE-----HHHHHHHHHCCCCEEEECCCHHHCHHHHHHHHHHCCCCC-EEEEEE---ECC
T ss_conf 99999999866987899645611-----899999997699899958604309378999999809864-799998---714
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 6887652012104887654454211024431113---------4103---445544202440355101135786579840
Q gi|254780453|r 128 DFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC---------SPQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQK 195 (238)
Q Consensus 128 ~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~---------s~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~ 195 (238)
.....-.+......-..........+.|+..+++ ++-+ ++.+++.. +-.++.+.||+-.. |
T Consensus 133 ~~~v~~~~~~~~~~~~~~~~i~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~-~~pii~~GGv~~~~----d-- 205 (229)
T pfam00977 133 DGKVAINGWREETGIDAVEWAKKLEELGAGEILLTDIDRDGTLSGPDLELTRELAEAV-NIPVIASGGVGSLE----D-- 205 (229)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----H--
T ss_conf 5179980643356744334456776516750688775042756668999999999768-99899985899999----9--
Q ss_pred EECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 0369899996599899998533088
Q gi|254780453|r 196 RFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 196 r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
-.++.+.|.+-++||+++|.-
T Consensus 206 ----i~~l~~~g~~gvivg~al~~g 226 (229)
T pfam00977 206 ----LKELFSEGVDGVIAGSALHEG 226 (229)
T ss_pred ----HHHHHHCCCCEEEEHHHHHCC
T ss_conf ----999998799899985786687
No 146
>PRK06857 consensus
Probab=91.33 E-value=1.3 Score=24.42 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=108.5
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH--HHH
Q ss_conf 231157898899960799899999999738-85228998689984255899999985154667877640424678--987
Q gi|254780453|r 6 IIDVDEKKRLVVGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV--TAA 82 (238)
Q Consensus 6 ~~~~~kk~~livALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv--~~~ 82 (238)
+++.-++++++--+-..+.+++..+++.+- .-+..+++-+. .....+.|+.+++....+ .++ .| || ...
T Consensus 5 ii~~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlr--t~~a~~~I~~l~~~~p~~----~vG-aG-TV~~~e~ 76 (209)
T PRK06857 5 IIEKLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFR--SAAAAEAIRLLREAYPDM----LIG-AG-TVLTPEQ 76 (209)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHCCCC----EEE-EE-ECCCHHH
T ss_conf 999999799799997599999999999999879988999589--932999999999758994----899-99-3767999
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 765215675089972460467777653023553-104666414777688765201210488765445421102443111-
Q gi|254780453|r 83 IEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV- 160 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV- 160 (238)
++.+.+.|++++- +|+.-.+..+.+++.+. .+=|| +|. .+ . ..|.+.|++-+-
T Consensus 77 ~~~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv--~Tp---sE------------i-----~~A~~~G~~~vKl 131 (209)
T PRK06857 77 VDAAKEAGADFIV---SPGFNPNTVKYCQQLNIPIVPGV--NNP---SL------------V-----EQALEMGLTTLKF 131 (209)
T ss_pred HHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCC--CCH---HH------------H-----HHHHHCCCCEEEE
T ss_conf 9999983999999---08999999999997499654787--999---99------------9-----9999879998997
Q ss_pred ------CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC-----CCCCHHHHHHH
Q ss_conf ------3410344554420244035510113578657984003698999965998999985330-----88888999999
Q gi|254780453|r 161 ------CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV-----RAADPVSAAQE 229 (238)
Q Consensus 161 ------~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~-----~a~dP~~aa~~ 229 (238)
-.+.-++.++.-+++-.++-|.||.+. +..+-++.|+=..+.|..+. +++|-.+-.++
T Consensus 132 FPA~~~gG~~~lkal~~p~p~~~~~ptGGV~~~-----------N~~~yl~~~~v~~~gGS~l~~~~~i~~~d~~~I~~~ 200 (209)
T PRK06857 132 FPAEASGGVNMLKALLAPYPNLQIMPTGGINPS-----------NIKDYLAIPNVVACGGTWMVPKKLIDNGNWDEIGRL 200 (209)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHH-----------HHHHHHCCCCEEEEECHHHCCHHHHHCCCHHHHHHH
T ss_conf 866212669999998653899809964898887-----------899998599889998936589999972899999999
Q ss_pred HHHHHHHH
Q ss_conf 99986651
Q gi|254780453|r 230 FQRAISLI 237 (238)
Q Consensus 230 i~~~i~~~ 237 (238)
-++.++.+
T Consensus 201 a~~~~~~v 208 (209)
T PRK06857 201 VREVVALV 208 (209)
T ss_pred HHHHHHHH
T ss_conf 99999973
No 147
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=91.30 E-value=0.18 Score=29.99 Aligned_cols=146 Identities=21% Similarity=0.198 Sum_probs=74.9
Q ss_pred CCHHHHHHH---HHHHHCCCCCEEEEEECCCH-HHH--------------------------HHHHHHCCCCCCEEEEEE
Q ss_conf 042467898---77652156750899724604-677--------------------------776530235531046664
Q gi|254780453|r 73 FDIGSSVTA---AIEHIANMGVAMLTVHAYPQ-TMR--------------------------SAVSVVRDTGICLLAVTV 122 (238)
Q Consensus 73 ~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~-~l~--------------------------~~~~~~~~~~~~il~Vt~ 122 (238)
.||...+.. +.+.+.+.|+|.|-+|+.-| .+. +.+++.++....-++| =
T Consensus 135 ~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~~~~~~v~v-R 213 (337)
T PRK13523 135 EQIKETVLAFKQAAKRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFV-R 213 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE-E
T ss_conf 999999999999999999849998998135435899847923248958558888999889999999999865886399-9
Q ss_pred ECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC-------------C---HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 1477768876520121048876544542110244311134-------------1---03445544202440355101135
Q gi|254780453|r 123 LTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS-------------P---QEVRMVREIVGHNMVIVTPGIRM 186 (238)
Q Consensus 123 LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s-------------~---~ei~~ir~~~~~~~~~itPGI~~ 186 (238)
|+ ..++.+.|. ++++.+ .+++...+.|+|-+-+| + ...+.+|+.+ +-..+.+.||+-
T Consensus 214 is---~~d~~~gG~--~~~d~~-~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~g~~~~~a~~ik~~~-~ipvi~vG~i~~ 286 (337)
T PRK13523 214 IS---ASDYHPDGL--TVQDYV-QYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIKEHA-NIATGAVGLITT 286 (337)
T ss_pred EC---CCCCCCCCC--CHHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 33---655578998--989999-99999997499989957885547767778753348999999876-970999838699
Q ss_pred CCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCC-HHHHHHHHHHHHHH
Q ss_conf 786579840036989999659-989999853308888-89999999998665
Q gi|254780453|r 187 LGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAAD-PVSAAQEFQRAISL 236 (238)
Q Consensus 187 ~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~d-P~~aa~~i~~~i~~ 236 (238)
. .+.+++++.| +|++-+||+.....| |.+++++...+|+.
T Consensus 287 ~----------~~ae~~l~~G~aD~V~~gR~~iadPd~p~kaa~~~~~ei~~ 328 (337)
T PRK13523 287 G----------AQAEEILNNNRADLIFIGRELLRNPYFPRIAANELGFEIEE 328 (337)
T ss_pred H----------HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 9----------99999998799479998999998910999999766999999
No 148
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=91.22 E-value=0.35 Score=28.06 Aligned_cols=58 Identities=31% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 34455442024403551011357865798400369899996599899998533088888999999999866
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
..+.+|.......+++-.|||-.. | .++-.++|||.||+|--|+++. +++.++.+.++
T Consensus 181 ~~e~v~~v~~~~~LivGGGIrs~E-----~-----A~~~a~agAD~IVtG~iiee~~---~~~~~~v~~~k 238 (240)
T COG1646 181 PVEMVSRVLSDTPLIVGGGIRSPE-----Q-----AREMAEAGADTIVTGTIIEEDP---DKALETVEAIK 238 (240)
T ss_pred CHHHHHHHHCCCEEEECCCCCCHH-----H-----HHHHHHCCCCEEEECCEEECCH---HHHHHHHHHHH
T ss_conf 889999861455089858849899-----9-----9999971799899770020087---88999999860
No 149
>PRK04302 triosephosphate isomerase; Provisional
Probab=91.21 E-value=0.24 Score=29.12 Aligned_cols=135 Identities=21% Similarity=0.356 Sum_probs=71.2
Q ss_pred HHHHHHHHHHCCCCCEEEEE-EC-----CCHHHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHCCCCHHHHHHHHHH
Q ss_conf 67898776521567508997-24-----60467777653023553104666414777688-7652012104887654454
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTV-HA-----YPQTMRSAVSVVRDTGICLLAVTVLTSMDDFD-LRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTv-H~-----~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~-l~~~g~~~~~~~~v~~~a~ 149 (238)
.|-+-....+.+.|+.++.+ |+ +++ ..+.++.+.+.+...+. + . ++.+ ...... +.. .-
T Consensus 72 ~TGevS~~mL~d~G~~~vIlGHSERR~~~~E-~~~~v~~a~~~gl~~I~-C--v--~~~~~~~~~~~---l~~-----~~ 137 (223)
T PRK04302 72 HTGHILPEAVKDAGAVGTLLNHSERRLRLAD-IEAAVERAKELGLESVV-C--T--NNPETSAAAAA---LGP-----DA 137 (223)
T ss_pred CCCCCCHHHHHHCCCCEEEECCCHHHHHCCC-HHHHHHHHHHCCCEEEE-E--C--CCHHHHHHHHH---CCC-----CE
T ss_conf 6263309999985999999565331000322-79999999986994899-7--2--73998889986---589-----98
Q ss_pred HHHH----CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCEECCHHH----HHHCCCCEEEECCHHCCC
Q ss_conf 2110----2443111341034455442024403551011357-865798400369899----996599899998533088
Q gi|254780453|r 150 QARD----IGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRML-GSATDGQKRFATPET----ALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 150 ~a~~----~g~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~-~~~~~dq~r~~tp~~----Ai~~GaD~iVVGR~I~~a 220 (238)
+|-+ .| .|..+|+.+...+++.+ ....-+.|+||.. |++. +|.+ +.+.|.|-.-||.+..+|
T Consensus 138 IAYEPvWAIG-TG~~as~~~~e~i~~~~-~~~~~~~~~i~ILYGGsV-------~~~n~~~~~~~~~vDG~LVGgAsLkA 208 (223)
T PRK04302 138 VAVEPPELIG-TGIPVSKAKPEVVTGTV-EAVRKVNPDVKVLCGAGI-------STGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred EEECCHHHHC-CCCCCCCCCHHHHHHHH-HHHHHHCCCCCEEEECCC-------CHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9988889844-89876625899999999-999964799758997846-------87889999746899858976256668
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 88899999999986
Q gi|254780453|r 221 ADPVSAAQEFQRAI 234 (238)
Q Consensus 221 ~dP~~aa~~i~~~i 234 (238)
+||.+..+++.+.+
T Consensus 209 ~Dp~~~l~~l~~~~ 222 (223)
T PRK04302 209 KDPEAALRDLVSPL 222 (223)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 79999999999752
No 150
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.17 E-value=1.3 Score=24.31 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=75.0
Q ss_pred CHHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHH--HHHHHCCCCHH
Q ss_conf 42467898------776521567508997246----0467777653023553104666414777688--76520121048
Q gi|254780453|r 74 DIGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFD--LRESGYEKDIS 141 (238)
Q Consensus 74 DIpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~--l~~~g~~~~~~ 141 (238)
.+|=|+.+ .++.+.+.|+|-+.+... |+-++++.+..... .-++++-.--...+.. ...-+......
T Consensus 74 ~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~i~~~~~~~G~q-~Iv~siD~~~~~~~~~~~v~~~~~~~~~~ 152 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVADPELITELADRFGSQ-CIVVAIDAKRDGEPGRWEVFTHGGRKPTG 152 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCE-EEEEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 98778517621389876898779878999984653853557889746983-59999998873768718999807841255
Q ss_pred HHHHHHHHHHHHCCCCCCCC---------CCHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH-HCCC
Q ss_conf 87654454211024431113---------4103445---544202440355101135786579840036989999-6599
Q gi|254780453|r 142 DMVRMRAVQARDIGMGGIVC---------SPQEVRM---VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL-KYGA 208 (238)
Q Consensus 142 ~~v~~~a~~a~~~g~~GvV~---------s~~ei~~---ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~Ga 208 (238)
-......+...+.|+..+++ .+.+++. +++.. +-.++.+.|++-.. .-.+++ ..|.
T Consensus 153 ~~~~~~i~~~~~~g~geil~tdI~rDG~~~G~d~~l~~~i~~~~-~iPiI~sGGv~s~~----------di~~~l~~~~i 221 (253)
T PRK02083 153 IDAVEWAKEVQELGAGEILLTSMDQDGTKNGYDLELTRAVRDAV-SVPVIASGGAGNLE----------HFAEAFTEGGA 221 (253)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHHCCC
T ss_conf 23999999987569878999988555866788999999999757-99999988999999----------99999986798
Q ss_pred CEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 8999985330888889999999998
Q gi|254780453|r 209 SHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 209 D~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
|-+++|+..+..+.-.+.+++|...
T Consensus 222 ~gv~~G~~~~~~~~sl~~~k~~L~~ 246 (253)
T PRK02083 222 DAALAASVFHFGEITIGELKAYLAE 246 (253)
T ss_pred EEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf 0998712777699999999999998
No 151
>PRK06852 aldolase; Validated
Probab=91.00 E-value=1.3 Score=24.43 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=67.0
Q ss_pred CCCCEEEEEECCC------HHHHHHHHHHC---CCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 5675089972460------46777765302---35531046664147776887652012104887654454211024431
Q gi|254780453|r 88 NMGVAMLTVHAYP------QTMRSAVSVVR---DTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG 158 (238)
Q Consensus 88 ~~g~d~iTvH~~~------~~l~~~~~~~~---~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G 158 (238)
.+|+..+-.|..+ .|+++..+... +.+.-++ ++.=.-...+.+ .. -.+.+...+.+|.+.|.|
T Consensus 132 ~LGa~aVG~TIY~GSe~e~~ml~e~~~i~~eA~~~Gl~~V---lW~YpRG~~ik~---e~-d~~~iA~aA~~aaeLGAD- 203 (303)
T PRK06852 132 GLNILGVGYTIYLGSEYEAEMLSEAAQIIYEAHKHGLVAV---LWIYPRGKAVKD---EK-DPHLIAGAAGVAACLGAD- 203 (303)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEE---EEEEECCCCCCC---CC-CHHHHHHHHHHHHHHCCC-
T ss_conf 5886599999857974069999999999999997699089---999515876789---87-678999999999986799-
Q ss_pred CCC-C-C-----HHHHHHHHH---HCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH-CCCCEEEECCHHCCC--CCHHH
Q ss_conf 113-4-1-----034455442---024403551011357865798400369899996-599899998533088--88899
Q gi|254780453|r 159 IVC-S-P-----QEVRMVREI---VGHNMVIVTPGIRMLGSATDGQKRFATPETALK-YGASHIVVSRPIVRA--ADPVS 225 (238)
Q Consensus 159 vV~-s-~-----~ei~~ir~~---~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~-~GaD~iVVGR~I~~a--~dP~~ 225 (238)
+|- . | ......|+. .+.-.++++.|= +.++..-.....++++ .|+.-.++||-+-+. +++.+
T Consensus 204 IIKvk~P~~~~~~~~e~f~~~v~~aGr~~VI~SGG~-----~~~~~~~l~~v~~ai~~gG~~G~iiGRN~FQrp~~eav~ 278 (303)
T PRK06852 204 FVKVNYPKKEGANPAELFKEAVMAAGRTKVVCAGGS-----STDAEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVR 278 (303)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH
T ss_conf 898248766789998999999980899559975899-----898799999999999972995574432213688617999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780453|r 226 AAQEFQR 232 (238)
Q Consensus 226 aa~~i~~ 232 (238)
-.+.|+.
T Consensus 279 ll~aI~~ 285 (303)
T PRK06852 279 MCNAIYA 285 (303)
T ss_pred HHHHHHH
T ss_conf 9998898
No 152
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.89 E-value=1.4 Score=24.15 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCHHHHHHH---HHHHHCCCCCEEEEEECCC-H-HHHH--------------------------HHHHHCC-CCCC-EEE
Q ss_conf 042467898---7765215675089972460-4-6777--------------------------7653023-5531-046
Q gi|254780453|r 73 FDIGSSVTA---AIEHIANMGVAMLTVHAYP-Q-TMRS--------------------------AVSVVRD-TGIC-LLA 119 (238)
Q Consensus 73 ~DIpnTv~~---~v~~~~~~g~d~iTvH~~~-~-~l~~--------------------------~~~~~~~-~~~~-il~ 119 (238)
.||-.++.. +.+.+.+.|+|+|=+|+.. | -+.. .+++.++ .+.. .++
T Consensus 143 ~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~ 222 (382)
T cd02931 143 EEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVS 222 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999999999984999899624530358998548735898864589878856189999999999709887389
Q ss_pred EEEECC-----------CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC---------------------HHHH
Q ss_conf 664147-----------77688765201210488765445421102443111341---------------------0344
Q gi|254780453|r 120 VTVLTS-----------MDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSP---------------------QEVR 167 (238)
Q Consensus 120 Vt~LTS-----------~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~---------------------~ei~ 167 (238)
+ -|+. +..+++.+.|. ++++. ...+++-.+.|+|-+-+|. ...+
T Consensus 223 ~-R~s~~~~~~~~~~g~~~~~~~~~~g~--~l~e~-~~~~~~l~~~G~D~l~vs~g~~~~~~~~~~~~~~~~g~~~~~a~ 298 (382)
T cd02931 223 L-RYSVKSYIKDLRQGALPGEEFQEKGR--DLEEG-LKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCK 298 (382)
T ss_pred E-EECCCCCCCCCCCCCCCHHHHHHHHH--HHHHH-HHHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCCCCCCCHHHHH
T ss_conf 9-96563345665457885777888763--59999-99999999839888964777421101037975467631489999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHHH
Q ss_conf 5544202440355101135786579840036989999659-9899998533088888999999
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.+|+.+ +-.++.+.||+-+. ..+++++.| ||++-+||+.....|-.+.+++
T Consensus 299 ~ik~~~-~iPvi~~G~i~~p~----------~ae~~l~~g~aD~V~~gR~~iadP~~v~K~~~ 350 (382)
T cd02931 299 ALKEVV-DVPVIMAGRMEDPE----------LASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred HHHHHC-CCCEEEECCCCCHH----------HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHC
T ss_conf 999873-99889968969999----------99999986996543622898869359999982
No 153
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.86 E-value=1.4 Score=24.13 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=104.3
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHH-HHHHHH
Q ss_conf 231157898899960799899999999738-852289986899842558999999851546678776404246-789877
Q gi|254780453|r 6 IIDVDEKKRLVVGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGS-SVTAAI 83 (238)
Q Consensus 6 ~~~~~kk~~livALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpn-Tv~~~v 83 (238)
+-++.++++++--+-..+.+++.++++.+- .-+..+++-+. .....+.|+.+++.... +.++ .|. +-...+
T Consensus 8 i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~--tp~a~~~I~~l~~~~p~----~~vG-aGTV~~~e~~ 80 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR--TPAALEAIRAIRKEVPE----ALIG-AGTVLNPEQL 80 (212)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHHCCC----CEEE-EEEECCHHHH
T ss_conf 999997698799997489999999999999879978999578--96199999999975898----1796-5331348899
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf 65215675089972460467777653023553-1046664147776887652012104887654454211024431113-
Q gi|254780453|r 84 EHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC- 161 (238)
Q Consensus 84 ~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~- 161 (238)
+.+.+.|++++- +|+.-.+..+.+++.+. .+-||. |. .+. ..|.+.|++-+-.
T Consensus 81 ~~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---sEi-----------------~~A~~~G~~~vK~F 135 (212)
T PRK05718 81 AQAIEAGAQFIV---SPGLTPPLLKACQDGPIPLIPGVN--TP---SEL-----------------MLAMELGLRTFKFF 135 (212)
T ss_pred HHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEEC
T ss_conf 999984998998---489989999999981997657869--99---999-----------------99998799989978
Q ss_pred ------CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC-CHHC-----CCCCHHHHHHH
Q ss_conf ------41034455442024403551011357865798400369899996599899998-5330-----88888999999
Q gi|254780453|r 162 ------SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS-RPIV-----RAADPVSAAQE 229 (238)
Q Consensus 162 ------s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG-R~I~-----~a~dP~~aa~~ 229 (238)
.+.-++.++.-++.-.++-|.||.+.+ ..+-++. +..+.|| ..+. +++|-.+-.++
T Consensus 136 PA~~~gG~~~lkal~~p~p~i~~~ptGGV~~~N-----------~~~yl~~-~~v~avgGS~l~~~~~v~~~d~~~I~~~ 203 (212)
T PRK05718 136 PAEASGGVKMLKALAGPFSDVRFCPTGGISPAN-----------YRDYLAL-PNVLCIGGSWMVPKDAIENGDWDRITRL 203 (212)
T ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHH-----------HHHHHCC-CCEEEEECHHHCCHHHHHCCCHHHHHHH
T ss_conf 761017999999985658998288659989878-----------9999817-8869998735289999864899999999
Q ss_pred HHHHHHHH
Q ss_conf 99986651
Q gi|254780453|r 230 FQRAISLI 237 (238)
Q Consensus 230 i~~~i~~~ 237 (238)
-++.++++
T Consensus 204 a~~~~~~v 211 (212)
T PRK05718 204 AREAVALV 211 (212)
T ss_pred HHHHHHHH
T ss_conf 99999973
No 154
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=90.78 E-value=0.39 Score=27.73 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHCC----CCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 54211024431113---41034455442024----403551011357865798400369899996599899998533088
Q gi|254780453|r 148 AVQARDIGMGGIVC---SPQEVRMVREIVGH----NMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 148 a~~a~~~g~~GvV~---s~~ei~~ir~~~~~----~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
+..+.++|++.+-+ ||.+++.+.+.+.. -.+-.+.||.+++ ..+.-+.|+|+| +++++|.|
T Consensus 196 ~~~a~~~g~d~I~LDn~s~~~ik~~v~~~~~~~~~v~ieaSGgI~~~n-----------i~~yA~tGvD~I-s~~a~~~a 263 (272)
T cd01573 196 ALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIEN-----------AAAYAAAGADIL-VTSAPYYA 263 (272)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH-----------HHHHHHCCCCEE-ECCHHHCC
T ss_conf 999984699999977999999999999974448876999989999999-----------999997399999-80843277
Q ss_pred CCHH
Q ss_conf 8889
Q gi|254780453|r 221 ADPV 224 (238)
Q Consensus 221 ~dP~ 224 (238)
+ |.
T Consensus 264 ~-~~ 266 (272)
T cd01573 264 K-PA 266 (272)
T ss_pred C-HH
T ss_conf 6-22
No 155
>PRK00915 2-isopropylmalate synthase; Validated
Probab=90.68 E-value=1.5 Score=24.02 Aligned_cols=171 Identities=22% Similarity=0.187 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCH--HH--HHHHHHCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 998999999997388-5228998689984255899999985154--66--787764042467898776521567508997
Q gi|254780453|r 22 PTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGK--SV--FLDMKLFDIGSSVTAAIEHIANMGVAMLTV 96 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~--~I--f~D~K~~DIpnTv~~~v~~~~~~g~d~iTv 96 (238)
.+.++-+++++.|.. -|+.+++|+|.....-.+.++.+.+.+. .| |.-....|| ..+++++.+.+.+.+.+
T Consensus 23 fs~e~K~~Ia~~L~~~GV~~IE~G~P~~s~~d~e~~~~i~~~~~~~~i~~~~ra~~~di----d~a~eal~~~~~~~v~i 98 (511)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDI----DAAAEALKPAEKPRIHT 98 (511)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHH----HHHHHHHHCCCCCEEEE
T ss_conf 89999999999999769898998267789789999999986059989999726755529----99999973589888999
Q ss_pred EC--CC------------H---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24--60------------4---6777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 97 HA--YP------------Q---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 97 H~--~~------------~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
-. ++ + ++.++++.++..+..+ .++.+| ++. .-.+.+.+....|.++|++-+
T Consensus 99 ~~~~S~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V-------~f~~ED----~sr-td~~~l~~~~~aa~~aGa~~i 166 (511)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV-------EFSAED----ATR-TDLDFLCRVVEAAIDAGATTI 166 (511)
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-------EEECCC----CCC-CCHHHHHHHHHHHHHCCCCEE
T ss_conf 96578899999978999999999999999999809859-------993240----577-798999999999876499998
Q ss_pred C-------CCCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 1-------341034----4554420244035510113578657984003698999965998999
Q gi|254780453|r 160 V-------CSPQEV----RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 160 V-------~s~~ei----~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
. +.|++. +.+++.++ +.--+.=|+...+ + -+-=+.+-..|+.+|||.+=
T Consensus 167 ~l~DTvG~~~P~~~~~~i~~l~~~~p-~~~~v~i~vH~HN-D--~GlAvANslaAv~AGA~~V~ 226 (511)
T PRK00915 167 NIPDTVGYTTPEEFGELIKTLRERVP-NIDKAIISVHCHN-D--LGMAVANSLAAVEGGARQVE 226 (511)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEECC-C--CCHHHHHHHHHHHHCCCCEE
T ss_conf 64566677693899999999998648-8656248998418-8--68999999999983905010
No 156
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.59 E-value=1.1 Score=24.80 Aligned_cols=137 Identities=22% Similarity=0.272 Sum_probs=70.3
Q ss_pred CHHHHH---HHHHHHHCCCCCEEEEEECCCHH-H--------------------------HHHHHHHCC-CCCC-EEEEE
Q ss_conf 424678---98776521567508997246046-7--------------------------777653023-5531-04666
Q gi|254780453|r 74 DIGSSV---TAAIEHIANMGVAMLTVHAYPQT-M--------------------------RSAVSVVRD-TGIC-LLAVT 121 (238)
Q Consensus 74 DIpnTv---~~~v~~~~~~g~d~iTvH~~~~~-l--------------------------~~~~~~~~~-~~~~-il~Vt 121 (238)
||-.++ ..+.+.+.+.|+|.|=+|+.-|. + .+.+++.+. .+.. .++|-
T Consensus 135 eI~~ii~~f~~AA~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvR 214 (327)
T cd02803 135 EIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVR 214 (327)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999999999999999849998998357661888721754698777788898999899999999999973988761799
Q ss_pred EECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC---------------------HHHHHHHHHHCCCCEEE
Q ss_conf 414777688765201210488765445421102443111341---------------------03445544202440355
Q gi|254780453|r 122 VLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSP---------------------QEVRMVREIVGHNMVIV 180 (238)
Q Consensus 122 ~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~---------------------~ei~~ir~~~~~~~~~i 180 (238)
| | ..+..+.+. +.++. ..+++...+.|+|-+-+|. ...+.+|+.+ +-.++.
T Consensus 215 -l-s--~~d~~~~g~--~~~e~-~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~ 286 (327)
T cd02803 215 -L-S--ADDFVPGGL--TLEEA-IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIA 286 (327)
T ss_pred -E-C--HHHCCCCCC--CHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEE
T ss_conf -7-7--021268999--98999-99999998559998997778456675446787777522389999999976-981999
Q ss_pred EECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHH
Q ss_conf 101135786579840036989999659-989999853308888899999
Q gi|254780453|r 181 TPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 181 tPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~ 228 (238)
+.||+-.. ..+++++.| +|++-+||+.+...|-.+.++
T Consensus 287 ~G~i~~~~----------~a~~~l~~g~~D~V~~gR~~iadPd~~~k~~ 325 (327)
T cd02803 287 VGGIRDPE----------VAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred ECCCCCHH----------HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 89989999----------9999998899312586699997914999997
No 157
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.57 E-value=1.5 Score=23.96 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=67.3
Q ss_pred HHHHHHHHHHCCCCCEEEEEE-CCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 678987765215675089972-460--46777765302355310466641477768876520121048876544542110
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTVH-AYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARD 153 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTvH-~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~ 153 (238)
+.|...++.+.+.|+|.+-|- +.. ..|+.+.+..++.+...-+....|. +.. + ..+...++++...+
T Consensus 97 dvv~~fv~~~~~~GidifRiFDaLNdv~Nm~~ai~~vk~~G~~~q~~i~yt~-sPv------h---t~~yy~~~ak~l~~ 166 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDLRNLETSIKAVKKTGKHAQGTICYTV-SPI------H---TTEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEC-CCC------C---CHHHHHHHHHHHHH
T ss_conf 9999999999976998899724444577789999999971885899999605-887------7---89999999999997
Q ss_pred CCCCCCC-------CCCHH----HHHHHHHHCCCCEE-E----EECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 2443111-------34103----44554420244035-5----1011357865798400369899996599899998
Q gi|254780453|r 154 IGMGGIV-------CSPQE----VRMVREIVGHNMVI-V----TPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 154 ~g~~GvV-------~s~~e----i~~ir~~~~~~~~~-i----tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
.|++.+- ++|.. ++.+|+.++++.-+ + |.|.. ++|--+|+++|+|++=+.
T Consensus 167 ~G~d~i~IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~-----------~~~~l~AieAGvDivD~A 232 (499)
T PRK12330 167 MGCDSICIKDMAALLKPQPAYDLVKGIKEACGPDTRVHVHAHATTGVT-----------LVSLMKAIEAGVDVVDTA 232 (499)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH-----------HHHHHHHHHCCCCEECCC
T ss_conf 599989984753467889999999999986389983798517887469-----------999999998499887244
No 158
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=90.57 E-value=1.5 Score=23.96 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHH-CCCCCEEEECHHHH-HCCCHHHHHHHHHHC-HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9989999999973-88522899868998-425589999998515-46678776404246789877652156750899724
Q gi|254780453|r 22 PTVKEAERIVSIL-SDTVSFYKIGYHLS-FSGGLELARDLISDG-KSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 22 ~~~~e~l~l~~~l-~~~i~~iKig~~l~-~~~G~~~i~~l~k~~-~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
.|+-+..+...+. -+.+..+-+.-..- .....+.|+++.+.. .|+-+.--+-+ ...++.+.++|++-+.+..
T Consensus 29 gdP~~~a~~~~~~g~d~l~i~DLdaa~~~~~~n~~~I~~I~~~~~~pi~vGGGIrs-----~~~~~~l~~~Ga~kvvi~s 103 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS-----LEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCEEECCCCCC-----HHHHHHHHHCCCCEEEECC
T ss_conf 99999999999869998999967530308911599999999767956897377175-----9999999864887189714
Q ss_pred C----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCHH
Q ss_conf 6----04677776530235531046664147776887652012104887654454211024431113---------4103
Q gi|254780453|r 99 Y----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC---------SPQE 165 (238)
Q Consensus 99 ~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~---------s~~e 165 (238)
. +..++++.+..... .-++++-. .+.....+ ++.....-......+...+.|+..++. ++.+
T Consensus 104 ~~~~~~~~~~~~~~~~G~q-~iv~slD~---k~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d 178 (234)
T cd04732 104 AAVKNPELVKELLKEYGGE-RIVVGLDA---KDGKVATK-GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN 178 (234)
T ss_pred CHHHCHHHHHHHHHHCCCC-CEEEEEEE---ECCCHHCC-CCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 0110827899999982976-46999997---51200016-8640013516999999974586469987642566535689
Q ss_pred HHH---HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC-CHHHH
Q ss_conf 445---54420244035510113578657984003698999965998999985330888-88999
Q gi|254780453|r 166 VRM---VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA-DPVSA 226 (238)
Q Consensus 166 i~~---ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~-dP~~a 226 (238)
++. +++.. +-.++.+.|+|-.. | -+.+.+.|++.++||++++.-. +..++
T Consensus 179 ~~ll~~i~~~~-~~p~i~~GGv~s~~----d------i~~l~~~g~~gvivgsAlh~g~i~~~e~ 232 (234)
T cd04732 179 FELYKELAAAT-GIPVIASGGVSSLD----D------IKALKELGVAGVIVGKALYEGKITLEEA 232 (234)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCCHH----H------HHHHHHCCCCEEEEEHHHHCCCCCHHHH
T ss_conf 99999998657-99899981899999----9------9999977998999988987799898997
No 159
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.45 E-value=0.45 Score=27.35 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 54211024431113---41034455442024403-5510113578657984003698999965998999985330888
Q gi|254780453|r 148 AVQARDIGMGGIVC---SPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 148 a~~a~~~g~~GvV~---s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
+..|.++|+|.+-+ ||.+++.+.+...+... -.+.||.+.+ ..+.-+.|.|+|.+|.....++
T Consensus 195 ~~~a~~~gadiI~LDn~spe~~~~~v~~~~~~v~ieaSGgIn~~n-----------i~~ya~~GvD~Is~g~lt~~~~ 261 (268)
T cd01572 195 LKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASGGITLEN-----------IRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHCCCC
T ss_conf 999997599999977999999999999866956999989998999-----------9999975999998385436995
No 160
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=90.36 E-value=1.6 Score=23.84 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=67.2
Q ss_pred CHHHHHH---HHHHHHCCCCCEEEEEECCCH-HH--------------------------HHHHHHHCC-CCCCEEEEEE
Q ss_conf 4246789---877652156750899724604-67--------------------------777653023-5531046664
Q gi|254780453|r 74 DIGSSVT---AAIEHIANMGVAMLTVHAYPQ-TM--------------------------RSAVSVVRD-TGICLLAVTV 122 (238)
Q Consensus 74 DIpnTv~---~~v~~~~~~g~d~iTvH~~~~-~l--------------------------~~~~~~~~~-~~~~il~Vt~ 122 (238)
||...+. .+.+.+.+.|+|++-+|+.-| .+ .+.+++.++ .+.... |.+
T Consensus 131 eI~~ii~~f~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~-v~~ 209 (353)
T cd02930 131 EIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI-IIY 209 (353)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE-EEE
T ss_conf 9999999999999999982999899625676148773387547885745798788879999999999997099874-999
Q ss_pred ECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC--------------------HHHHHHHHHHCCCCEEEEE
Q ss_conf 14777688765201210488765445421102443111341--------------------0344554420244035510
Q gi|254780453|r 123 LTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSP--------------------QEVRMVREIVGHNMVIVTP 182 (238)
Q Consensus 123 LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~--------------------~ei~~ir~~~~~~~~~itP 182 (238)
--|.+ +..+.|. +.++.. .++..-.+.|+|-+-+|. ...+.+|+.+ +-.++.+.
T Consensus 210 Ris~~--d~~~~G~--~~~e~~-~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~p~g~~~~~a~~ir~~~-~~Pvi~~G 283 (353)
T cd02930 210 RLSML--DLVEGGS--TWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASN 283 (353)
T ss_pred ECCCC--CCCCCCC--CHHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEECC
T ss_conf 73601--2689998--999999-999999981999999637744466875334577236699999988754-83489659
Q ss_pred CCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHH
Q ss_conf 1135786579840036989999659-989999853308888899999
Q gi|254780453|r 183 GIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 183 GI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~ 228 (238)
||+-+ .+.+++++.| +|++-+||+.+...|-.+.++
T Consensus 284 ~i~~p----------~~ae~~l~~g~aD~V~~gR~liadPdl~~K~~ 320 (353)
T cd02930 284 RINTP----------EVAERLLADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred CCCCH----------HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf 97989----------99999998799624784099876936999998
No 161
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.18 E-value=1.1 Score=24.85 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=67.4
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8776521567508997246----046777765302355310466641477768876520121048876544542110244
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGM 156 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~ 156 (238)
..++.+.+.|++-+.+-.. ++-++++.+...+ + .+++ +...+.. +.--|+.....-.+..+.+...+.|+
T Consensus 86 e~~~~~l~~GadkVvigS~a~~n~~~i~~~~~~~g~-~-ivvs---iD~k~~~-v~~~gw~~~t~~~~~~~i~~~~~~G~ 159 (241)
T PRK00748 86 ETVEAYLDAGVARVIIGTAAVKNPELVKEACKKFPG-R-IVVG---LDARDGK-VATRGWQEVSGVDLEDLAKRFEDAGV 159 (241)
T ss_pred HHHHHHHHCCCCEEEECCHHHHCHHHHHHHHHHCCC-C-EEEE---EEECCCE-EECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999999976977588647103396899999862355-5-7999---9821665-40157554679748999999985587
Q ss_pred CCCCC---------CCHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC-CH
Q ss_conf 31113---------4103---44554420244035510113578657984003698999965998999985330888-88
Q gi|254780453|r 157 GGIVC---------SPQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA-DP 223 (238)
Q Consensus 157 ~GvV~---------s~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~-dP 223 (238)
..+++ ++-+ ++.+++.+ +-.++.+.|++-. +|=++ -++.-..|.+-+|||+++|.-+ +.
T Consensus 160 ~eii~tdI~~DGt~~G~d~~l~~~i~~~~-~ipviasGGv~s~----~Di~~---L~~~~~~gv~gviiG~Aly~g~i~l 231 (241)
T PRK00748 160 AAIIYTDISRDGTLSGPNVELTRELAAAT-PIPVIASGGVSSL----DDIRA---LKALGPEGVEGVIVGKALYEGKFDL 231 (241)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCH----HHHHH---HHHCCCCCCCEEEEEHHHHCCCCCH
T ss_conf 56999887056854768999999999868-9989998899999----99999---9860317924899878987799899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780453|r 224 VSAAQEFQ 231 (238)
Q Consensus 224 ~~aa~~i~ 231 (238)
.++.+-.+
T Consensus 232 ~eal~~~~ 239 (241)
T PRK00748 232 AEALACWQ 239 (241)
T ss_pred HHHHHHHH
T ss_conf 99999865
No 162
>KOG4175 consensus
Probab=90.15 E-value=1.6 Score=23.73 Aligned_cols=196 Identities=21% Similarity=0.258 Sum_probs=108.5
Q ss_pred CCCCCEE--EEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHH--CCCHHHHH----HHHH-HCH-HHHHHHHHCC----
Q ss_conf 5789889--9960799899999999738-85228998689984--25589999----9985-154-6678776404----
Q gi|254780453|r 10 DEKKRLV--VGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSF--SGGLELAR----DLIS-DGK-SVFLDMKLFD---- 74 (238)
Q Consensus 10 ~kk~~li--vALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~--~~G~~~i~----~l~k-~~~-~If~D~K~~D---- 74 (238)
++|+-|+ +-+-+++.++...+++-+. +-.++++.|.||-. ..|+.+-. .|.+ ..+ .+|.-.|.+-
T Consensus 15 enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gv 94 (268)
T KOG4175 15 ENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGV 94 (268)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 28705899872489967889999988752796748866856764567734556678998728968999999998504686
Q ss_pred -HH------------HHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf -24------------678987765215675089972460-4677776530235531046664147776887652012104
Q gi|254780453|r 75 -IG------------SSVTAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 75 -Ip------------nTv~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
+| .-+++.+..+++.|+..+.|--.| +--....+.+++.+..++-.+.- |..++.++- +
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaP-sTtdeRmel------l 167 (268)
T KOG4175 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAP-STTDERMEL------L 167 (268)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHH------H
T ss_conf 302662201448876407899999996587745850688689899999998649248974179-980899999------9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC-----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC--CCEEEE
Q ss_conf 88765445421102443111341-----03445544202440355101135786579840036989999659--989999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVCSP-----QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG--ASHIVV 213 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~s~-----~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G--aD~iVV 213 (238)
.+....+.....+.|..|.-.|- .-+.++|+..++..+-+-=|| .||+-...-| ||-+||
T Consensus 168 ~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGv-------------st~EHf~qVgsvaDGVvv 234 (268)
T KOG4175 168 VEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGV-------------STPEHFKQVGSVADGVVV 234 (268)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-------------CCHHHHHHHHHHCCCEEE
T ss_conf 9863255999871456661777888899999999986489862675066-------------878998765203254476
Q ss_pred CCHHC----CCCCHHH
Q ss_conf 85330----8888899
Q gi|254780453|r 214 SRPIV----RAADPVS 225 (238)
Q Consensus 214 GR~I~----~a~dP~~ 225 (238)
|..|. +|+.|.+
T Consensus 235 GSkiv~l~g~ae~g~~ 250 (268)
T KOG4175 235 GSKIVKLLGEAESGEQ 250 (268)
T ss_pred CHHHHHHHCCCCCCCC
T ss_conf 0789998605898532
No 163
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=90.02 E-value=1.6 Score=23.84 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=64.8
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCC----HHHHHHHHHH-CHHHHHHHH------HCCHHH-HHHHHH
Q ss_conf 9996079989999999973885228998689984255----8999999851-546678776------404246-789877
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGG----LELARDLISD-GKSVFLDMK------LFDIGS-SVTAAI 83 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G----~~~i~~l~k~-~~~If~D~K------~~DIpn-Tv~~~v 83 (238)
||.+--++.++.+.-++.+...++++++=.+++...- .+.++++++. +.|+++-.. .+++.. .-...+
T Consensus 1 cv~i~~~~~~~~~~~~~~~~~~aD~vE~R~D~l~~~~~~~i~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 80 (222)
T pfam01487 1 CVPVTGPSLEEALAELEELKEGADAVELRVDLLENVDAEDVSEQLSALRESTGLPIIFTVRTKSEGGRFEGSEEEYLELL 80 (222)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHH
T ss_conf 95605799999999999861089989998603568787899999999998389977999687788899889999999999
Q ss_pred HHHCCCCCEEEEEECC--CHHHHHHHHHHCCCCCCEEE
Q ss_conf 6521567508997246--04677776530235531046
Q gi|254780453|r 84 EHIANMGVAMLTVHAY--PQTMRSAVSVVRDTGICLLA 119 (238)
Q Consensus 84 ~~~~~~g~d~iTvH~~--~~~l~~~~~~~~~~~~~il~ 119 (238)
+.+.++|+|++.|-.. ...+.. ...++..+.++++
T Consensus 81 ~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~~~~kvI~ 117 (222)
T pfam01487 81 KEALRLGPDYIDIELSSAPEELLS-VIAAKKGGTKIIL 117 (222)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHH-HHHHHCCCCEEEE
T ss_conf 999975898899977778136899-9997428978999
No 164
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.97 E-value=1 Score=25.00 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCCEEEEEECCCH-HHH--------------------------HHHHHHCC-CCCC-EEEEEEECCCCHHH
Q ss_conf 9877652156750899724604-677--------------------------77653023-5531-04666414777688
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQ-TMR--------------------------SAVSVVRD-TGIC-LLAVTVLTSMDDFD 130 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~-~l~--------------------------~~~~~~~~-~~~~-il~Vt~LTS~~~~~ 130 (238)
..+++.+.+.|+|.+=+|+.-| .+. +.+++.++ .+.. .++|- |+ ..+
T Consensus 152 ~~AA~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~R-is---~~d 227 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIK-LN---SAD 227 (338)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE-EC---HHH
T ss_conf 99999999839998998236554899862987689968579898899889999999999971998869998-45---354
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC------------------------HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 765201210488765445421102443111341------------------------03445544202440355101135
Q gi|254780453|r 131 LRESGYEKDISDMVRMRAVQARDIGMGGIVCSP------------------------QEVRMVREIVGHNMVIVTPGIRM 186 (238)
Q Consensus 131 l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~------------------------~ei~~ir~~~~~~~~~itPGI~~ 186 (238)
..+.|.+ .++.+ .+++...+.|+|-+-+|. .-.+.+|+.+ +-.++.+.||+-
T Consensus 228 ~~~~G~~--~~d~~-~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~Pvi~~G~i~~ 303 (338)
T cd04733 228 FQRGGFT--EEDAL-EVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRT 303 (338)
T ss_pred HCCCCCC--HHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 2479999--89999-9999998769988994688545732247765444567510599999999984-997999899899
Q ss_pred CCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHH
Q ss_conf 786579840036989999659-98999985330888889999
Q gi|254780453|r 187 LGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAA 227 (238)
Q Consensus 187 ~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa 227 (238)
+. +..++++.| +|++-+||+.+...|-.+.+
T Consensus 304 ~~----------~ae~~l~~g~~DlV~~gR~~iadPdl~~k~ 335 (338)
T cd04733 304 RA----------AMEQALASGAVDGIGLARPLALEPDLPNKL 335 (338)
T ss_pred HH----------HHHHHHHCCCCEEHHHHHHHHHCCCHHHHH
T ss_conf 99----------999999879951089889999790599998
No 165
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.83 E-value=0.33 Score=28.23 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCCCCCCCH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 454211024431113410--3445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ--EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~--ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
...+|.+.+++|+--... .+..+|+.++++.++ |+ +.++-. ....|...|+||+.+| |++.
T Consensus 72 ~~~lA~~~~adGvHLgq~d~~~~~~r~~l~~~~ii---G~-----S~h~~~---e~~~A~~~gaDYi~~G-pvf~ 134 (210)
T PRK00043 72 RVDLALAVGADGVHLGQDDLPVADARAILGPDAII---GV-----STHTLE---EAAAAAAAGADYVGVG-PIFP 134 (210)
T ss_pred HHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCEE---EE-----ECCCHH---HHHHHHHHCCCEEEEC-CCCC
T ss_conf 89999871999897698876899999751988789---98-----479999---9999988289838874-5214
No 166
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=89.68 E-value=0.95 Score=25.23 Aligned_cols=159 Identities=13% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHH---HH-CCCCCCEEEEEEE
Q ss_conf 2558999999851546678776404246789877652156750899724604--6777765---30-2355310466641
Q gi|254780453|r 50 SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQ--TMRSAVS---VV-RDTGICLLAVTVL 123 (238)
Q Consensus 50 ~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~--~l~~~~~---~~-~~~~~~il~Vt~L 123 (238)
.+|..-+.|+.++...+-.|.++|=||+-=.+-++.+.++ +++-.||+..- -.++..+ .. ......++.-.-+
T Consensus 48 ~fGENrvQE~~~K~~~l~~~i~WHfIG~LQsNKvk~i~~~-~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi 126 (227)
T cd06822 48 HFGENYVQELIEKAPDLPIDIKWHFIGHLQSNKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNT 126 (227)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 0288609999999984532545999645324348999706-774466415749999999999997368887069999702
Q ss_pred CCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCCC-CCH--H-----------HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 477768876520121-04887654454211024431113-410--3-----------44554420244035510113578
Q gi|254780453|r 124 TSMDDFDLRESGYEK-DISDMVRMRAVQARDIGMGGIVC-SPQ--E-----------VRMVREIVGHNMVIVTPGIRMLG 188 (238)
Q Consensus 124 TS~~~~~l~~~g~~~-~~~~~v~~~a~~a~~~g~~GvV~-s~~--e-----------i~~ir~~~~~~~~~itPGI~~~~ 188 (238)
+++. +..|+.. .+.+.+...........+.|+-| +|. + ++.+++.+...+-.-.+-.-+.-
T Consensus 127 ---~~E~-~K~G~~~~e~~~~~~~i~~~~~~l~i~GLMti~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSM 202 (227)
T cd06822 127 ---SGEE-SKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSM 202 (227)
T ss_pred ---CCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf ---7864-568989999999999999868997688999869899880022139999999999999997499999798868
Q ss_pred CCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 6579840036989999659989999853308
Q gi|254780453|r 189 SATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 189 ~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
+=.+| -..|++.||+.+=||++|..
T Consensus 203 GMS~D------ye~AIe~GsT~VRIGs~IFG 227 (227)
T cd06822 203 GMSAD------FEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred CHHHH------HHHHHHCCCCEEECCCHHCC
T ss_conf 53657------99999879997983713109
No 167
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=89.58 E-value=1.5 Score=23.94 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=67.6
Q ss_pred CCHHHHHHH---HHHHHCCCCCEEEEEECCCHH---------------------------HHHHHHHHCC-CCCCEEEEE
Q ss_conf 042467898---776521567508997246046---------------------------7777653023-553104666
Q gi|254780453|r 73 FDIGSSVTA---AIEHIANMGVAMLTVHAYPQT---------------------------MRSAVSVVRD-TGICLLAVT 121 (238)
Q Consensus 73 ~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~~---------------------------l~~~~~~~~~-~~~~il~Vt 121 (238)
.||-..+.. +++.+.+.|+|++-+|+.-|. +.+.+++.++ .+..-++|-
T Consensus 145 ~eI~~ii~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vR 224 (338)
T cd02933 145 EEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999999999983999999822440689985385326898978999899989999999999997298708999
Q ss_pred EECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC--CC----------CCHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 41477768876520121048876544542110244311--13----------4103445544202440355101135786
Q gi|254780453|r 122 VLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI--VC----------SPQEVRMVREIVGHNMVIVTPGIRMLGS 189 (238)
Q Consensus 122 ~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv--V~----------s~~ei~~ir~~~~~~~~~itPGI~~~~~ 189 (238)
|+-.+. ...+.... ..+....++....+.|++-+ .. .+...+.+|+.+ +..++.+.||.++
T Consensus 225 -lSp~~~--~~g~~~~~-~~~~~~~~~~~l~~~gid~~~v~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i~~~-- 297 (338)
T cd02933 225 -LSPFGT--FNDMGDSD-PEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF-KGPLIAAGGYDAE-- 297 (338)
T ss_pred -ECCCCC--CCCCCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCHH--
T ss_conf -657667--68878887-7999999999999859988997268777777776577999999986-9979996998999--
Q ss_pred CCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHH
Q ss_conf 579840036989999659-989999853308888899999
Q gi|254780453|r 190 ATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 190 ~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~ 228 (238)
..++++..| +|++-+||+.....|-...++
T Consensus 298 ---------~ae~~l~~G~~D~V~~gR~liaDP~~~~K~~ 328 (338)
T cd02933 298 ---------SAEAALADGKADLVAFGRPFIANPDLVERLK 328 (338)
T ss_pred ---------HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf ---------9999998799603685299987913999996
No 168
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.43 E-value=1.3 Score=24.37 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 4554420244035510113578657984003698999965998999985330888889999999
Q gi|254780453|r 167 RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 167 ~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
..+++....-.++.+.||+-.. | -....+.|.+-++||+++|.-.=..+.+.++
T Consensus 174 ~~~~~~~~~~~iiasGGv~s~~----D------l~~l~~~g~~gvivG~Al~~g~i~l~e~~~~ 227 (228)
T PRK04128 174 ENIERFWGDEEFIYAGGVSSIE----D------VKKLAEIGFSGAIIGKALYEGRISLEELLEV 227 (228)
T ss_pred HHHHHHCCCCCEEEECCCCCHH----H------HHHHHHCCCCEEEEEHHHHCCCCCHHHHHHC
T ss_conf 9999861689689878989999----9------9999967998999985385699789999434
No 169
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.41 E-value=1.8 Score=23.50 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC--
Q ss_conf 998999999997388-52289986899842558999999851546678776404246789877652156750899724--
Q gi|254780453|r 22 PTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA-- 98 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~-- 98 (238)
.+.++-+++++.|.. -++.+++|+|.......++++++.+.+.. .++.--..++...+..+.+.+++.+.+-.
T Consensus 20 ~s~eeKl~ia~~L~~lGv~~IE~G~P~~s~~d~e~v~~i~~~~~~----~~i~~~~r~~~~di~~~~~a~~~~v~i~~~t 95 (487)
T PRK09389 20 LTPEEKLEIARKLDELGVDVIEAGSAITSKGERESIKLVAEQGLN----AEICSFARALKVDIDAALECDVDSVHLVVPT 95 (487)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 899999999999997699999975887884399999999847999----7899875564876999985797989999626
Q ss_pred CC---------------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf 60---------------467777653023553104666414777688765201210488765445421102443111---
Q gi|254780453|r 99 YP---------------QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV--- 160 (238)
Q Consensus 99 ~~---------------~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV--- 160 (238)
++ ++..++++.+++.+..+. ++.+| +. ..=.+.+.+....|.++|.+-+.
T Consensus 96 S~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~v~-------~~~ED----~s-r~~~~fl~e~~~~a~~aga~~i~l~D 163 (487)
T PRK09389 96 SDLHIEYKLRKTREEVLEMAVEAVEYAKDHGLIVE-------LSGED----AS-RADLDFLKELYRAGIEAGADRICFCD 163 (487)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE-------EEEEC----CC-CCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999988679999999999999999997497799-------92106----65-55779999999999973899622488
Q ss_pred ----CCCHHHHHH-HHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf ----341034455-4420244035510113578657984003698999965998999
Q gi|254780453|r 161 ----CSPQEVRMV-REIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 161 ----~s~~ei~~i-r~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
+.|++...+ +.+ ...+ -+.=|+...+ |-+.=+.+-..|+.+||+.+=
T Consensus 164 TvG~~~P~~~~~~i~~l-~~~~-~~~i~vH~HN---D~GlAvANslaAv~aGA~~V~ 215 (487)
T PRK09389 164 TVGILTPERSYELFKRL-SESL-KIPISIHCHN---DFGLATANTLAALAAGADQCH 215 (487)
T ss_pred CCCCCCHHHHHHHHHHH-CCCC-CCEEEEEECC---CCCHHHHHHHHHHHHCCCEEE
T ss_conf 88887999999998630-0467-8548997059---977799999999995026643
No 170
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=89.40 E-value=1.9 Score=23.36 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHCHHH----HHHHHHCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 998999999997388-522899868998425589999998515466----787764042467898776521567508997
Q gi|254780453|r 22 PTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDGKSV----FLDMKLFDIGSSVTAAIEHIANMGVAMLTV 96 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~~~I----f~D~K~~DIpnTv~~~v~~~~~~g~d~iTv 96 (238)
.+.++-+++++.|.. -+..+++|.++....-.+.++.+.+..+.. +.-....| +..+++.+.+.|++.+.+
T Consensus 11 ~~~e~K~~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~g~~~i~i 86 (237)
T pfam00682 11 FSVEEKLAIARALDEAGVDEIEVGFPFMSPTDFESVRAIAEVLKKAKIQALLRPVEHD----IDAAVEAAKGAGADRVHV 86 (237)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCHH----HHHHHHHHHHCCCCEEEE
T ss_conf 8999999999999984989899957758973599999776502587510100034104----999999999679999999
Q ss_pred EC--CCH---------------HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24--604---------------6777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 97 HA--YPQ---------------TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 97 H~--~~~---------------~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
-. ++. .+++.++.+++.+..+- +...+. . ..-.+.+.+....+.+.|++.+
T Consensus 87 ~~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~----f~~~~~-------~-~~~~~~~~~~~~~~~~~G~~~i 154 (237)
T pfam00682 87 FIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVE----LGCEDA-------G-RTDLAFLIEVVEVAQEAGATRI 154 (237)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE----EEECCC-------C-CCCHHHHHHHHHHHHHCCCCEE
T ss_conf 610578789988578999999999999999998699058----840512-------3-2478899999999986198579
Q ss_pred C-------CCCHHHHH----HHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 1-------34103445----54420244035510113578657984003698999965998999
Q gi|254780453|r 160 V-------CSPQEVRM----VREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 160 V-------~s~~ei~~----ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
. ..|.++.. +|+.++...+ ++... ++. +.=+.+.-.|+.+|+|.+=
T Consensus 155 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i----~~H~H-n~~--Gla~aN~l~A~~aG~~~id 211 (237)
T pfam00682 155 NIADTVGVLTPNEAADLISALKDRVPPVII----EVHCH-NDL--GMAVANSLAAVEAGADRVD 211 (237)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCE----EEEEC-CCC--CHHHHHHHHHHHHCCCEEE
T ss_conf 736864557989999999999970898715----88744-886--7299999999996899998
No 171
>PRK08782 consensus
Probab=88.89 E-value=2 Score=23.13 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=103.1
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHC-CCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH--HHHH
Q ss_conf 31157898899960799899999999738-85228998689984255899999985154667877640424678--9877
Q gi|254780453|r 7 IDVDEKKRLVVGLDLPTVKEAERIVSILS-DTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV--TAAI 83 (238)
Q Consensus 7 ~~~~kk~~livALD~~~~~e~l~l~~~l~-~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv--~~~v 83 (238)
-++.++++++--+-..+.++++++++.+- .-+..+++-+. .....+.|+.+++.... +.++ .| || ...+
T Consensus 11 ~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlr--t~~a~~~i~~l~~~~p~----~~vG-aG-TV~~~e~~ 82 (219)
T PRK08782 11 EQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLR--TPVAIEALAMLKRELPN----IVIG-AG-TVLSERQL 82 (219)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHHCCC----CEEE-EE-EECCHHHH
T ss_conf 99998789789997599999999999999879987999679--93399999999986899----4799-99-70589999
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC----
Q ss_conf 65215675089972460467777653023553-1046664147776887652012104887654454211024431----
Q gi|254780453|r 84 EHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGG---- 158 (238)
Q Consensus 84 ~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~G---- 158 (238)
+.+.+.|++++. +|+.-.+..+.++..+. .+-|+. |. .++ ..|.+.|++=
T Consensus 83 ~~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---SEi-----------------~~A~~~G~~~vKlF 137 (219)
T PRK08782 83 RQSVDAGADFLV---TPGTPAPLARLLADAPIPAVPGAA--TP---TEL-----------------LTLMGLGFRVCKLF 137 (219)
T ss_pred HHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEEC
T ss_conf 999984998998---789979999999981997647859--99---999-----------------99998799989977
Q ss_pred ---CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHH-----CCCCCH---HHHH
Q ss_conf ---11341034455442024403551011357865798400369899996599899998533-----088888---9999
Q gi|254780453|r 159 ---IVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPI-----VRAADP---VSAA 227 (238)
Q Consensus 159 ---vV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I-----~~a~dP---~~aa 227 (238)
.+-++.-++.++.-++.-.++-|.||.+.+ ..+-+..+.-..|.|..+ .+++|- .+.+
T Consensus 138 PA~~~Gg~~~lkal~~pfp~~~f~pTGGV~~~N-----------~~~yl~~~~v~~vgGS~l~~~~li~~~dw~~I~~~a 206 (219)
T PRK08782 138 PATAVGGLQMLKGLAGPLSELKLCPTGGISETN-----------AAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESS 206 (219)
T ss_pred CCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHH-----------HHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHH
T ss_conf 732208499999984769998187679989878-----------999980799399988253899998619999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999998665
Q gi|254780453|r 228 QEFQRAISL 236 (238)
Q Consensus 228 ~~i~~~i~~ 236 (238)
+++.+.++.
T Consensus 207 ~~~~~~v~~ 215 (219)
T PRK08782 207 AKAAAIVRQ 215 (219)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 172
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.86 E-value=0.63 Score=26.42 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCCCC---CCCHHHHHHHHHHCC---C-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 45421102443111---341034455442024---4-0355101135786579840036989999659989999853308
Q gi|254780453|r 147 RAVQARDIGMGGIV---CSPQEVRMVREIVGH---N-MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 147 ~a~~a~~~g~~GvV---~s~~ei~~ir~~~~~---~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
.+..|.++|+|.+- .||.+++.+-+.... + .+-++.||.+. +..+.-+.|+|+|.+|..+..
T Consensus 193 ea~~a~~~gaDiI~LDn~~~e~~k~~v~~~~~~~~~v~ieaSGGI~~~-----------ni~~yA~~GvD~Is~g~lth~ 261 (272)
T PRK05848 193 EAKEAMNAGADIVMCDNMSVEETKEIVAYRNANYPHVLLEASGNISLE-----------TINAYAKSGVDAISSGSLIHQ 261 (272)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEECCHHHCC
T ss_conf 999998459998995899999999999987464887799997999899-----------999999659999987977679
Q ss_pred CC
Q ss_conf 88
Q gi|254780453|r 220 AA 221 (238)
Q Consensus 220 a~ 221 (238)
+.
T Consensus 262 a~ 263 (272)
T PRK05848 262 AT 263 (272)
T ss_pred CC
T ss_conf 93
No 173
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=88.57 E-value=0.49 Score=27.12 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=86.3
Q ss_pred CHHHHHHHHHH-HCCCCCEE----E-EC-------HHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 98999999997-38852289----9-86-------899842558999999851546678776404246789877652156
Q gi|254780453|r 23 TVKEAERIVSI-LSDTVSFY----K-IG-------YHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 23 ~~~e~l~l~~~-l~~~i~~i----K-ig-------~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
+.++.++.++. |..-|.++ | .. ..-++....++-+-.++++.+.|. ---+.-+...
T Consensus 13 ~~~~~~~~ve~Al~GGV~~~QlR~K~~~~~~~yGE~~~~~~~A~~l~~lc~~y~~~f~v-----------ND~vdlA~~~ 81 (210)
T TIGR00693 13 DLKDLLARVEAALKGGVTLVQLRDKGSNALQQYGETRERLELAEKLRELCRKYGVPFIV-----------NDRVDLALAL 81 (210)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-----------CCHHHHHHHH
T ss_conf 53448999999985896299984058754212585889999999999999870897688-----------2839999983
Q ss_pred CCEEEEEECC-CHH-HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC----CCC---
Q ss_conf 7508997246-046-7777653023553104666414777688765201210488765445421102443----111---
Q gi|254780453|r 90 GVAMLTVHAY-PQT-MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMG----GIV--- 160 (238)
Q Consensus 90 g~d~iTvH~~-~~~-l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~----GvV--- 160 (238)
++|.+ |.. .++ ...+.+.... -+++|+|.-+ .+++.+..- + + .+.|+| |-|
T Consensus 82 ~ADGv--HlGQ~D~p~~~aR~l~G~--~~iiG~S~~~---~~e~~~a~~-C---~---------~~~gaDY~G~Gp~fpT 141 (210)
T TIGR00693 82 GADGV--HLGQDDLPVSEARKLLGP--DKIIGVSTHN---LEELAEAAA-C---E---------LKEGADYIGVGPIFPT 141 (210)
T ss_pred CCCEE--EECCCCCCHHHHHHHCCC--CCEEEEEECC---HHHHHHHHH-H---H---------HHCCCCEEEECCCCCC
T ss_conf 79877--667888998999985389--9579853379---899999998-7---6---------4078988886371158
Q ss_pred ---------CCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf ---------34103445544202-44035510113578657984003698999965998999985330888889999999
Q gi|254780453|r 161 ---------CSPQEVRMVREIVG-HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 161 ---------~s~~ei~~ir~~~~-~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
.+.+-++.+++... .-.++-=.||.++ +..+.+..|+|.|-|=|+|+.|+||.++++++
T Consensus 142 ~TK~~~~~~~g~e~l~~~~~~~~h~~P~VAIGGI~~~-----------n~~~v~~~G~~~vAVvSaI~~A~d~~~a~~~l 210 (210)
T TIGR00693 142 PTKKDAAPPVGLELLREIAATSIHDIPIVAIGGITLE-----------NVAEVLAAGADGVAVVSAIMQAADPKAAAKEL 210 (210)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHH-----------HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHC
T ss_conf 8788987764888999999861788765887598878-----------99999972887388865101572289999719
No 174
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=88.27 E-value=1.6 Score=23.86 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCEECCHHHH--HHCCCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 4455442024403551-0113578657984003698999--965998999985330888889999999
Q gi|254780453|r 166 VRMVREIVGHNMVIVT-PGIRMLGSATDGQKRFATPETA--LKYGASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 166 i~~ir~~~~~~~~~it-PGI~~~~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
...+...++++.+.|+ -||+ ||.+. ++.++|-+-||-++.+++||.++.++.
T Consensus 192 ~~~l~~~ip~~~~~VsESGI~-------------~~~di~~l~~~~da~LIGeslMk~~d~~~a~~~L 246 (247)
T PRK13957 192 VEEVAAFLPPNIVKVGESGIE-------------SRSDLDKFRKLVDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred HHHHHHHCCCCCEEEECCCCC-------------CHHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 999984389998799678999-------------9999999997399999886775699999999975
No 175
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=88.09 E-value=2.3 Score=22.80 Aligned_cols=129 Identities=20% Similarity=0.204 Sum_probs=69.9
Q ss_pred HHHHHHHHCC----HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 6678776404----246789877652156750899724604677776530235531046664147776887652012104
Q gi|254780453|r 65 SVFLDMKLFD----IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 65 ~If~D~K~~D----IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
.++.|+-|.- .-..+.++.+-+.+.|+|++-+.+..++. ..++..-+.++-+.|=.=||......+...-.+..-
T Consensus 80 ~vv~DmPf~sy~~s~~~a~~nA~rl~ke~gadaVKlEgg~~~~-~~i~~l~~~GIPV~gHiGL~PQ~~~~~GG~r~qGkt 158 (266)
T PRK00311 80 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEELA-ETIRRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRD 158 (266)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 3995798764689999999999999985699989978883367-999999987997665415765001136886022599
Q ss_pred HHHH---HHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEC
Q ss_conf 8876---5445421102443111--34103445544202440355101135786579840036
Q gi|254780453|r 141 SDMV---RMRAVQARDIGMGGIV--CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFA 198 (238)
Q Consensus 141 ~~~v---~~~a~~a~~~g~~GvV--~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~ 198 (238)
.+.. .+.+..-.++|+..+| |-|.++. +++ .+..-+-|=|||. |...|.|-.|.
T Consensus 159 ~~ea~~l~~dA~~le~AGaf~ivlE~Vp~~la--~~I-t~~l~IPtIGIGA-G~~cDGQvLV~ 217 (266)
T PRK00311 159 EEAAEQLLEDAKALEEAGAFALVLECVPAELA--KEI-TEALSIPTIGIGA-GPDCDGQVLVM 217 (266)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH--HHH-HHCCCCCEEEECC-CCCCCEEEEEH
T ss_conf 99999999999999847954999955869999--999-9648998897055-89985688866
No 176
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=88.07 E-value=0.66 Score=26.26 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCCCCCCCCCHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH----CCCCEEEECCHHC
Q ss_conf 544542110244311134103--4455442024403551011357865798400369899996----5998999985330
Q gi|254780453|r 145 RMRAVQARDIGMGGIVCSPQE--VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK----YGASHIVVSRPIV 218 (238)
Q Consensus 145 ~~~a~~a~~~g~~GvV~s~~e--i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~----~GaD~iVVGR~I~ 218 (238)
.-+..+|...|.|||---.+| ++.+|+++|+..++ |+-. +.+. .-.+|.. .||||+=+|. ||
T Consensus 72 ND~vdlA~~~~ADGvHlGQ~D~p~~~aR~l~G~~~ii---G~S~-----~~~~---e~~~a~~C~~~~gaDY~G~Gp-~f 139 (210)
T TIGR00693 72 NDRVDLALALGADGVHLGQDDLPVSEARKLLGPDKII---GVST-----HNLE---ELAEAAACELKEGADYIGVGP-IF 139 (210)
T ss_pred CCHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCEE---EEEE-----CCHH---HHHHHHHHHHHCCCCEEEECC-CC
T ss_conf 2839999983798776678889989999853899579---8533-----7989---999999876407898888637-11
No 177
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=87.82 E-value=1.4 Score=24.23 Aligned_cols=137 Identities=26% Similarity=0.281 Sum_probs=67.6
Q ss_pred CCHHHHHHH---HHHHHCCCCCEEEEEECCCHH-HH--------------------------HHHHHHCC-CCCC-EEEE
Q ss_conf 042467898---776521567508997246046-77--------------------------77653023-5531-0466
Q gi|254780453|r 73 FDIGSSVTA---AIEHIANMGVAMLTVHAYPQT-MR--------------------------SAVSVVRD-TGIC-LLAV 120 (238)
Q Consensus 73 ~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~~-l~--------------------------~~~~~~~~-~~~~-il~V 120 (238)
.||-.++.. +.+.+.+.|+|.|-+|+.-|. +. +.+++.++ .+.. .++|
T Consensus 147 ~eI~~ii~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgv 226 (336)
T cd02932 147 EEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFV 226 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999999999999983999998631374799983694116777867997899988999999999998399887068
Q ss_pred EEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC--------------CH---HHHHHHHHHCCCCEEEEEC
Q ss_conf 641477768876520121048876544542110244311134--------------10---3445544202440355101
Q gi|254780453|r 121 TVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS--------------PQ---EVRMVREIVGHNMVIVTPG 183 (238)
Q Consensus 121 t~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s--------------~~---ei~~ir~~~~~~~~~itPG 183 (238)
= |+. .+..+.|+ +.++.. .+++...+.|+|-+-+| +. -.+.+|+.+ .-.++.+.|
T Consensus 227 R-is~---~d~~~~g~--~~~e~~-~~a~~l~~~gvd~i~vs~G~~~~~~~~~~~~~~~~~~a~~ik~~~-~ipvi~~G~ 298 (336)
T cd02932 227 R-ISA---TDWVEGGW--DLEDSV-ELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGL 298 (336)
T ss_pred E-ECC---CCCCCCCC--CHHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECC
T ss_conf 9-645---23578998--999999-999999975997899558987766667778642679999999878-983999799
Q ss_pred CCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCC-HHHHH
Q ss_conf 135786579840036989999659-989999853308888-89999
Q gi|254780453|r 184 IRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAAD-PVSAA 227 (238)
Q Consensus 184 I~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~d-P~~aa 227 (238)
|+-+ ...+++++.| +|++-+||+.+...| |.++|
T Consensus 299 i~~p----------~~ae~~l~~G~~DlV~~gR~~iadPdlp~kaA 334 (336)
T cd02932 299 ITDP----------EQAEAILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred CCCH----------HHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf 8999----------99999998799400686799997933999986
No 178
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.74 E-value=0.93 Score=25.30 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHCCCCCCC---CCCHHHHHHHHHH---CCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 45421102443111---3410344554420---2440-355101135786579840036989999659989999853308
Q gi|254780453|r 147 RAVQARDIGMGGIV---CSPQEVRMVREIV---GHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 147 ~a~~a~~~g~~GvV---~s~~ei~~ir~~~---~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
.+..|.++|+|.+- .||.+++.+-+.+ ++.. +-.+.||.+.+ ..+.-+.|+|+|++|.+.+.
T Consensus 205 q~~~a~~~g~DiI~LDnm~~~~~~~~v~~l~~~~~~v~iEaSGgIn~~n-----------i~~yA~tGVD~Is~galt~~ 273 (285)
T PRK07428 205 QVQEALEYGADIIMLDNMPVDQMQQAVQLIRQQNPRVKIEASGNITLET-----------IRAVAETGVDYISTSAPITR 273 (285)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHCC
T ss_conf 9999996699999987999999999999987308988999989999999-----------99999749999983831069
Q ss_pred CC
Q ss_conf 88
Q gi|254780453|r 220 AA 221 (238)
Q Consensus 220 a~ 221 (238)
++
T Consensus 274 ~~ 275 (285)
T PRK07428 274 SP 275 (285)
T ss_pred CC
T ss_conf 97
No 179
>PRK08904 consensus
Probab=87.51 E-value=2.5 Score=22.57 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=104.7
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH--HHHHH
Q ss_conf 115789889996079989999999973-885228998689984255899999985154667877640424678--98776
Q gi|254780453|r 8 DVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV--TAAIE 84 (238)
Q Consensus 8 ~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv--~~~v~ 84 (238)
++.+.++|+-=+-..|.++++.+++.+ ..-+..+++-+. .....+.|+.+++....+ .+ -.| || ...++
T Consensus 5 ~~L~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlr--tp~a~~~i~~l~~~~p~~----~v-GaG-TVl~~e~~~ 76 (207)
T PRK08904 5 EILTAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLR--TPVGLDAIRLIAKEVPNA----IV-GAG-TVTNPEQLK 76 (207)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHHCCCC----EE-EEE-ECCCHHHHH
T ss_conf 9998699799997699999999999999879988999579--913999999999868987----68-553-136899999
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC--
Q ss_conf 5215675089972460467777653023553-1046664147776887652012104887654454211024431113--
Q gi|254780453|r 85 HIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC-- 161 (238)
Q Consensus 85 ~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~-- 161 (238)
.+.+.|++++. +|+.-.+..+.+++.+. .+=||. |. .+. ..|.+.|++=+-.
T Consensus 77 ~a~~aGA~FiV---SP~~~~~v~~~a~~~~i~~iPGv~--Tp---sEi-----------------~~A~~~G~~~vK~FP 131 (207)
T PRK08904 77 AVEDAGAVFAI---SPGLHESLAKAGHNSGIPLIPGVA--TP---GEI-----------------QLALEHGIDTLKLFP 131 (207)
T ss_pred HHHHCCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEECC
T ss_conf 99984999998---489989999999983997657869--99---999-----------------999987999899776
Q ss_pred -----CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC-----CCCCHHHHHHHHH
Q ss_conf -----410344554420244035510113578657984003698999965998999985330-----8888899999999
Q gi|254780453|r 162 -----SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV-----RAADPVSAAQEFQ 231 (238)
Q Consensus 162 -----s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~-----~a~dP~~aa~~i~ 231 (238)
.+.-++.++..++.-.++-|.||.+.+ ..+-++.+.-..|.|..+. +++|-.+-.++-+
T Consensus 132 A~~~GG~~~lkal~~pfp~i~~~pTGGV~~~N-----------~~~yl~~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~ 200 (207)
T PRK08904 132 AEVVGGKAMLKALYGPYADVRFCPTGGISLAT-----------APEYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAK 200 (207)
T ss_pred CHHCCCHHHHHHHHCCCCCCEEEECCCCCHHH-----------HHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHH
T ss_conf 22208899999874659998088658989878-----------9999818984999881438999997489999999999
Q ss_pred HHHH
Q ss_conf 9866
Q gi|254780453|r 232 RAIS 235 (238)
Q Consensus 232 ~~i~ 235 (238)
+..+
T Consensus 201 ~a~~ 204 (207)
T PRK08904 201 EAAA 204 (207)
T ss_pred HHHH
T ss_conf 9972
No 180
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=87.38 E-value=1.6 Score=23.83 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=27.1
Q ss_pred CHHHH---HHCCCCEEEECCHHCCCCCHHHHHHHHH
Q ss_conf 98999---9659989999853308888899999999
Q gi|254780453|r 199 TPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQ 231 (238)
Q Consensus 199 tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~ 231 (238)
||.+. -..|+|-+.||-++.+++||.++.+++.
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 999999999748998996388856999899999861
No 181
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=87.12 E-value=1.5 Score=24.04 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=32.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHH
Q ss_conf 445544202440355101135786579840036989999659-989999853308888899999
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~ 228 (238)
.+.+|+.+ +-.++.+.||+-+. ..+++++.| +|++-+||+.+...|-.+.++
T Consensus 278 ~~~~k~~~-~~pvi~~G~i~~~~----------~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~ 330 (336)
T pfam00724 278 NEFIKKVW-KGPVITVGRINDPE----------FAAEIVEEGRADLVAMGRPFLADPDLVKKAK 330 (336)
T ss_pred HHHHHHHC-CCEEEEECCCCCHH----------HHHHHHHCCCCEEHHHHHHHHHCHHHHHHHH
T ss_conf 99999876-98599969999899----------9999998799443686699997913999998
No 182
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=87.12 E-value=0.7 Score=26.10 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHH
Q ss_conf 4455442024403551011357865798400369899996599899998533
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPI 217 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I 217 (238)
++.+++.+ +-.++.-.||.+++ ..++.+.|++.+-|=|+|
T Consensus 141 ~~~~~~~~-~~Pv~AiGGI~~~n-----------~~~~~~~Ga~gvAvis~i 180 (180)
T pfam02581 141 LRAIAEAV-NIPVVAIGGITPEN-----------VPEVLEAGADGVAVVSAI 180 (180)
T ss_pred HHHHHHHC-CCCEEEECCCCHHH-----------HHHHHHCCCCEEEEECCC
T ss_conf 99999858-99999990989999-----------999998599889996509
No 183
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.07 E-value=0.99 Score=25.13 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 54211024431113---41034455442024403-5510113578657984003698999965998999985330888
Q gi|254780453|r 148 AVQARDIGMGGIVC---SPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 148 a~~a~~~g~~GvV~---s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
+..|.++|+|.+-+ ||.+++..-+...+... -.+.||.+.+ ..+.-..|.|||.+|.....+.
T Consensus 202 ~~~a~~~gaDiI~LDnms~~~lk~av~~~~~~~~iEaSGGI~~~n-----------i~~yA~tGvD~IS~galt~~a~ 268 (277)
T PRK05742 202 LRQALAAGADIVMLDELSLDDMREAVRLTAGRAKLEASGGINETT-----------LRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHCCCC
T ss_conf 999874699899986999999999999747974899988999999-----------9999974999998880106996
No 184
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=86.91 E-value=2.1 Score=23.06 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=83.9
Q ss_pred HHHHHHHHC----CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHC--CC
Q ss_conf 667877640----424678987765215675089972460467777653023553104666414777688765201--21
Q gi|254780453|r 65 SVFLDMKLF----DIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGY--EK 138 (238)
Q Consensus 65 ~If~D~K~~----DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~--~~ 138 (238)
.++.|+-|. +.-..+.++.+-+.+.|++++-+-+..++..-..... +.++-+.|=.=||-.+-.- ..|| +.
T Consensus 78 ~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~-~~gIPV~gHiGLtPQ~v~~--~GGykvqG 154 (268)
T COG0413 78 FVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLT-ERGIPVMGHIGLTPQSVNW--LGGYKVQG 154 (268)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH-HCCCCEEEEECCCHHHHHC--CCCEEEEC
T ss_conf 69838987456789999999999999970788899757787999999999-7699567874577233000--37815543
Q ss_pred CHHHHHHHHHH---HHHHCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEC----------CHHHH
Q ss_conf 04887654454---21102443111--34103445544202440355101135786579840036----------98999
Q gi|254780453|r 139 DISDMVRMRAV---QARDIGMGGIV--CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFA----------TPETA 203 (238)
Q Consensus 139 ~~~~~v~~~a~---~a~~~g~~GvV--~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~----------tp~~A 203 (238)
.-++...++.. .-.++|+..+| |=|.++. +++ ...+-+-|=|||+ |...|.|--|. +|+-+
T Consensus 155 r~~~~a~~l~~dA~ale~AGaf~ivlE~Vp~~lA--~~I-T~~lsiPtIGIGA-G~~cDGQvLV~~D~lGl~~~~~PkFv 230 (268)
T COG0413 155 RTEESAEKLLEDAKALEEAGAFALVLECVPAELA--KEI-TEKLSIPTIGIGA-GPGCDGQVLVMHDMLGLSGGHKPKFV 230 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHH-HHCCCCCEEEECC-CCCCCCEEEEEEECCCCCCCCCCCHH
T ss_conf 8889999999999999855861999854569999--999-8337887786357-89987438874500366789898279
Q ss_pred HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 96599899998533088888999999999866
Q gi|254780453|r 204 LKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 204 i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
... .=.+ +...+|+++|.++.+
T Consensus 231 K~y----~~l~------~~i~~A~~~Y~~eV~ 252 (268)
T COG0413 231 KRY----ADLG------EEIRAAVKQYAAEVK 252 (268)
T ss_pred HHH----HCCH------HHHHHHHHHHHHHHH
T ss_conf 998----5005------899999999999985
No 185
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=86.87 E-value=2.6 Score=22.39 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=68.7
Q ss_pred HHHHHHHHCC----HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 6678776404----246789877652156750899724604677776530235531046664147776887652012104
Q gi|254780453|r 65 SVFLDMKLFD----IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 65 ~If~D~K~~D----IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
.++.|+=|.- .-..+.++.+-+.+.|+|++-+-+..... ..++...+.++-+.|=.=||-..-..+...-.+..-
T Consensus 79 ~iv~DmPf~sy~~s~~~a~~nA~rlmke~GadaVKlEgg~~~~-~~I~~l~~~GIPV~gHiGL~PQ~~~~~GG~r~qGk~ 157 (261)
T pfam02548 79 FVVADMPFGSYEASPEQALRNAARLMKEAGADAVKLEGGAEMA-DTIKALVDRGIPVMGHIGLTPQSVNQLGGYKVQGRT 157 (261)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCC
T ss_conf 4994787532467999999999999985499989978885358-999999988997653423674011236885102599
Q ss_pred HHHH---HHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEC
Q ss_conf 8876---5445421102443111--34103445544202440355101135786579840036
Q gi|254780453|r 141 SDMV---RMRAVQARDIGMGGIV--CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFA 198 (238)
Q Consensus 141 ~~~v---~~~a~~a~~~g~~GvV--~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~ 198 (238)
.+.. ...++.-.++|+.++| |-|.++. +++ .+..-+.|=|||. |...|.|-.+.
T Consensus 158 ~~ea~~l~~dA~~le~AGa~~ivlE~vp~~la--~~I-t~~~~IPtIGIGA-G~~cDGQvLV~ 216 (261)
T pfam02548 158 EEEAEQLLEDAKALEEAGAFALVLECVPAELA--KEI-TEKLSIPTIGIGA-GPGCDGQVLVL 216 (261)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH--HHH-HHCCCCCEEEECC-CCCCCEEEEEH
T ss_conf 99999999999999846874899966709999--999-9648998997266-89885688847
No 186
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=86.79 E-value=2.4 Score=22.70 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHCCCC-CEEEECHHHHHCCCHHHHHHHHHHC-HH--HHHHHHHCCHHHHHHH-HHHHHCCCC---CEE
Q ss_conf 99899999999738852-2899868998425589999998515-46--6787764042467898-776521567---508
Q gi|254780453|r 22 PTVKEAERIVSILSDTV-SFYKIGYHLSFSGGLELARDLISDG-KS--VFLDMKLFDIGSSVTA-AIEHIANMG---VAM 93 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i-~~iKig~~l~~~~G~~~i~~l~k~~-~~--If~D~K~~DIpnTv~~-~v~~~~~~g---~d~ 93 (238)
.+.++..++.++-..|- ..+=+...+. +-..+.|+... .. ...+|-++--|.-+.- ..+.+.+.| +||
T Consensus 21 ~T~~~I~~l~~eA~~~~f~avCV~P~~V----~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdEiDm 96 (228)
T COG0274 21 ATEEDIARLCAEAKEYGFAAVCVNPSYV----PLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAIENGADEIDM 96 (228)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCHH----HHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999999998853861899771359----999998446887489986279899873888999999999849970256
Q ss_pred EEEEC---CC--H----HHHHHHHHHCCC-CCCEEEEEEECC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-----
Q ss_conf 99724---60--4----677776530235-531046664147-77688765201210488765445421102443-----
Q gi|254780453|r 94 LTVHA---YP--Q----TMRSAVSVVRDT-GICLLAVTVLTS-MDDFDLRESGYEKDISDMVRMRAVQARDIGMG----- 157 (238)
Q Consensus 94 iTvH~---~~--~----~l~~~~~~~~~~-~~~il~Vt~LTS-~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~----- 157 (238)
+.=-+ ++ + -+++.++++... -.|++ +=|. +++++. .+....+.++|.|
T Consensus 97 Vinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVI---lEt~~Lt~ee~-------------~~A~~i~~~aGAdFVKTS 160 (228)
T COG0274 97 VINIGALKSGNWEAVEREIRAVVEACADAVVLKVI---LETGLLTDEEK-------------RKACEIAIEAGADFVKTS 160 (228)
T ss_pred EEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE---EECCCCCHHHH-------------HHHHHHHHHHCCCEEECC
T ss_conf 40089983698899999999999982877448999---74255697999-------------999999999589989847
Q ss_pred -CCC---CCCHHHHHHHHHHCCCCEE-EEECCC
Q ss_conf -111---3410344554420244035-510113
Q gi|254780453|r 158 -GIV---CSPQEVRMVREIVGHNMVI-VTPGIR 185 (238)
Q Consensus 158 -GvV---~s~~ei~~ir~~~~~~~~~-itPGI~ 185 (238)
|+. +.+.+++.+++.+|...-+ -+.|||
T Consensus 161 TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIr 193 (228)
T COG0274 161 TGFSAGGATVEDVKLMKETVGGRVGVKASGGIR 193 (228)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 787898987999999999856571053268848
No 187
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=86.79 E-value=2.7 Score=22.32 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=99.4
Q ss_pred EEEEEECC-------CHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHH--CCHHHHH----H
Q ss_conf 89996079-------989999999973-88522899868998425589999998515466787764--0424678----9
Q gi|254780453|r 15 LVVGLDLP-------TVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKL--FDIGSSV----T 80 (238)
Q Consensus 15 livALD~~-------~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~--~DIpnTv----~ 80 (238)
|++++|.+ ..++...+.++. ...+..+=+...+... ..+.+.........++=+ ++++... .
T Consensus 2 la~~IDHt~l~~~~t~~~di~~l~~~a~~~g~~avcv~p~~v~~----~~~~l~~~~v~~vv~fp~g~~~~~~k~~~~~~ 77 (231)
T pfam01791 2 LALAIDHTVLNPPDTASADIKALVAEALEPGASAVCVNPGYVAL----AARLLGKVDIALVIGFPAGTYLTPVKGRDVLV 77 (231)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHH----HHHHHCCCCEEEEEEECCCCCCCCCCCCCCHH
T ss_conf 27850377878898776899999999998799989987899999----99986579836999747988776554310028
Q ss_pred HHHHHHCCCCCEEEEEECC------C---HH---HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 8776521567508997246------0---46---7777653023553104666414777688765201210488765445
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY------P---QT---MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRA 148 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~------~---~~---l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a 148 (238)
..++.+...|+|-+-+... + .+ +.+..+.+...+.+++.-+.++.... .+ ..-.+.+....
T Consensus 78 ~ev~~Ai~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~lkvIiE~~~~~~~~---~~----~~~~~~i~~a~ 150 (231)
T pfam01791 78 AEAEEAIALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGLKVILEAYLRGEEI---KD----KVDPHLVAKAT 150 (231)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHH---CC----CCCHHHHHHHH
T ss_conf 879999987998899997246578955999999999999863104870899985157210---03----26899999999
Q ss_pred HHHHHCCCCCCCCC---------CHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCE-ECCHHHHHHCCCCE--EEEC
Q ss_conf 42110244311134---------10344554420244--03551011357865798400-36989999659989--9998
Q gi|254780453|r 149 VQARDIGMGGIVCS---------PQEVRMVREIVGHN--MVIVTPGIRMLGSATDGQKR-FATPETALKYGASH--IVVS 214 (238)
Q Consensus 149 ~~a~~~g~~GvV~s---------~~ei~~ir~~~~~~--~~~itPGI~~~~~~~~dq~r-~~tp~~Ai~~GaD~--iVVG 214 (238)
+.+.++|.|=+=+| +.+++.+++..+.. .+.++.||+-. +..| .....+++++||+. ...|
T Consensus 151 ria~e~GaD~vKtstg~~~~gat~~~v~~~~~~~~~~~~~Vk~sGGi~~~-----~~~~~l~~a~~~i~aGA~~~G~s~G 225 (231)
T pfam01791 151 RVGAEAGADFVKTSTGFGERGATEEDVQIFKEVVGGAPPGVKASGGIKEK-----DFLRTVEDAIALIEAGADRIGVSAG 225 (231)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-----CHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999599989815787888778889999999856878748993386864-----3789999999999869981209998
Q ss_pred CHHCC
Q ss_conf 53308
Q gi|254780453|r 215 RPIVR 219 (238)
Q Consensus 215 R~I~~ 219 (238)
|.|.+
T Consensus 226 r~i~q 230 (231)
T pfam01791 226 RAIWQ 230 (231)
T ss_pred HHHHC
T ss_conf 99876
No 188
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=86.60 E-value=1.2 Score=24.57 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHHCCCCCCCC---CCHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 454211024431113---4103445544202---4403551011357865798400369899996599899998533088
Q gi|254780453|r 147 RAVQARDIGMGGIVC---SPQEVRMVREIVG---HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~---s~~ei~~ir~~~~---~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
.+..|.++|+|.+-+ +|.+++.+-+.+. +-.+-++.||.+. +..+.-..|+|+|.+|.....+
T Consensus 193 ea~~a~~~g~D~I~LDn~~~~~~~~~v~~~~~~~~v~ieaSGgI~~~-----------ni~~ya~~GvD~Is~g~lt~s~ 261 (269)
T cd01568 193 EAEEALEAGADIIMLDNMSPEELKEAVKLLKGLPRVLLEASGGITLE-----------NIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHCCC
T ss_conf 99999976999999879899999999998477998599998999999-----------9999997599999908400599
Q ss_pred C
Q ss_conf 8
Q gi|254780453|r 221 A 221 (238)
Q Consensus 221 ~ 221 (238)
+
T Consensus 262 ~ 262 (269)
T cd01568 262 P 262 (269)
T ss_pred C
T ss_conf 7
No 189
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.59 E-value=2.8 Score=22.25 Aligned_cols=196 Identities=17% Similarity=0.261 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHCCCCC-----E-EEECHHHHHCCCHHHHHHHHHH-CHHHHH-HHHHCCH-HHHHHHHHHHHCCCCCEE
Q ss_conf 98999999997388522-----8-9986899842558999999851-546678-7764042-467898776521567508
Q gi|254780453|r 23 TVKEAERIVSILSDTVS-----F-YKIGYHLSFSGGLELARDLISD-GKSVFL-DMKLFDI-GSSVTAAIEHIANMGVAM 93 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~i~-----~-iKig~~l~~~~G~~~i~~l~k~-~~~If~-D~K~~DI-pnTv~~~v~~~~~~g~d~ 93 (238)
+..++..+++.+..... . +=|-.|+.. ..-+.++.+. ..++++ |.-+.|= +.|-+-....+.+.|+++
T Consensus 15 t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~---L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~ 91 (251)
T COG0149 15 TAAEAKALVEALAAELVAKEDDVEVAIAPPFTD---LRRVAELVEIGNIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKY 91 (251)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH---HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCE
T ss_conf 757789999998621355556605999588778---99999985247831774668865577866838899999869988
Q ss_pred EEE-ECC-----CH---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCC-HHHHHH-HHHHHHHHCCC------
Q ss_conf 997-246-----04---67777653023553104666414777688765201210-488765-44542110244------
Q gi|254780453|r 94 LTV-HAY-----PQ---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKD-ISDMVR-MRAVQARDIGM------ 156 (238)
Q Consensus 94 iTv-H~~-----~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~-~~~~v~-~~a~~a~~~g~------ 156 (238)
+.| |+= .+ .+.+..+++.+.+...+ ++--...+-+|.|.+.. +..++. -++.+..+.+.
T Consensus 92 viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pI----lCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~vIAYEP 167 (251)
T COG0149 92 VLIGHSERRLYFGETDELIAKKVKAAKEAGLTPI----LCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEP 167 (251)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE----EECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 9978501124356346999999999998899689----985897777755566889999999998744854373999878
Q ss_pred -----CCCCCCCHHH----HHHHHHHCCCCEEEEECCCCC-CCCCCCCCEECCHHHH----HHCCCCEEEECCHHCCCCC
Q ss_conf -----3111341034----455442024403551011357-8657984003698999----9659989999853308888
Q gi|254780453|r 157 -----GGIVCSPQEV----RMVREIVGHNMVIVTPGIRML-GSATDGQKRFATPETA----LKYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 157 -----~GvV~s~~ei----~~ir~~~~~~~~~itPGI~~~-~~~~~dq~r~~tp~~A----i~~GaD~iVVGR~I~~a~d 222 (238)
-|..+|+.++ ..+|+.....+--- ++++.+ |++. +|.++ .+.+.|-+-||++-.+++|
T Consensus 168 vWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~-~~v~IlYGGSV-------~~~N~~e~~~~~~idG~LVGgAslka~~ 239 (251)
T COG0149 168 VWAIGTGKSASPADAEEVHAFIRAVLAELFGAE-EKVRILYGGSV-------KPGNAAELAAQPDIDGALVGGASLKADD 239 (251)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCC-------CHHHHHHHHCCCCCCEEEECCEEECCHH
T ss_conf 888458988898889999999999999744877-87579971776-------8557999965899986897213305255
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q gi|254780453|r 223 PVSAAQEFQRA 233 (238)
Q Consensus 223 P~~aa~~i~~~ 233 (238)
|...++.+.+.
T Consensus 240 f~~ii~~~~~~ 250 (251)
T COG0149 240 FLAILEALAKA 250 (251)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998643
No 190
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.30 E-value=2.9 Score=22.16 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=81.5
Q ss_pred HHHHHHHHC--CH-H-HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCH
Q ss_conf 667877640--42-4-6789877652156750899724604677776530235531046664147776887652012104
Q gi|254780453|r 65 SVFLDMKLF--DI-G-SSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDI 140 (238)
Q Consensus 65 ~If~D~K~~--DI-p-nTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~ 140 (238)
.++.|+=|. .. + ..+.++.+-+.+.|+|++-+-+..+.. ..++..-+.++-+.|=.=||-.+-..+.....+..-
T Consensus 75 ~vv~DmPf~sy~~s~~~A~~nA~rl~ke~GadaVKlEgg~~~~-~~i~~L~~~GIPV~gHiGLtPQ~~~~~Gg~k~qGk~ 153 (254)
T cd06557 75 LVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVA-ETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKT 153 (254)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHCCCCEEEEECCCCHHCCCCCCCEEECCC
T ss_conf 3998556654579999999999999985599989979883389-999999987997665415774011216875322499
Q ss_pred HHH---HHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEE--EE
Q ss_conf 887---65445421102443111--341034455442024403551011357865798400369899996599899--99
Q gi|254780453|r 141 SDM---VRMRAVQARDIGMGGIV--CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHI--VV 213 (238)
Q Consensus 141 ~~~---v~~~a~~a~~~g~~GvV--~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i--VV 213 (238)
.+. ..+.++.-.++|+..+| |-|.++. +++ .+..-+-|=|||. |...|.|-.+.. +.+-...++. -|
T Consensus 154 ~~ea~~l~~dA~~le~AGaf~ivlE~vp~~la--~~I-t~~~~IPtIGIGA-G~~cDGQvLV~~--DlLG~~~~~~PkFv 227 (254)
T cd06557 154 EEEAERLLEDALALEEAGAFALVLECVPAELA--KEI-TEALSIPTIGIGA-GPDCDGQVLVWH--DMLGLSPGFKPKFV 227 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHH-HHCCCCCEEECCC-CCCCCEEEEEHH--HHHCCCCCCCCCHH
T ss_conf 99999999999999847955999956709999--999-8578988894567-899870378474--64278989899639
Q ss_pred CCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8533088888999999999866
Q gi|254780453|r 214 SRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 214 GR~I~~a~dP~~aa~~i~~~i~ 235 (238)
-+-.--.+...++.++|.++.+
T Consensus 228 K~y~~~~~~~~~Av~~y~~dVk 249 (254)
T cd06557 228 KRYADLGELIREAVKAYVEEVK 249 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8886379999999999999997
No 191
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=86.25 E-value=0.93 Score=25.31 Aligned_cols=60 Identities=27% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHCCCCCCC---CCCHHHHHHHHHH---CCC-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 1102443111---3410344554420---244-035510113578657984003698999965998999985330888
Q gi|254780453|r 151 ARDIGMGGIV---CSPQEVRMVREIV---GHN-MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 151 a~~~g~~GvV---~s~~ei~~ir~~~---~~~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
+.++|++.+- .||.+++.+.+.+ ++. .+-.+.||.++. ..+--+.|.|+|.+|...+.+.
T Consensus 96 a~~~~~d~I~LDn~spe~l~~~v~~l~~~~~~v~iEaSGgI~~~n-----------i~~yA~tGvD~IS~galt~sa~ 162 (169)
T pfam01729 96 ALEAGADIIMLDNFSPEEVREAVEELDERAGRVLLEVSGGITLDN-----------VLEYAKTGVDVISVGALTHSVP 162 (169)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHH-----------HHHHHHCCCCEEECCHHHCCCC
T ss_conf 984699899977999999999999999758967999618999999-----------9999976999998586446997
No 192
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.21 E-value=2.9 Score=22.13 Aligned_cols=165 Identities=17% Similarity=0.216 Sum_probs=98.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHH-HHHHHHHCC
Q ss_conf 789889996079989999999973-885228998689984255899999985154667877640424678-987765215
Q gi|254780453|r 11 EKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSV-TAAIEHIAN 88 (238)
Q Consensus 11 kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv-~~~v~~~~~ 88 (238)
++.+|+-=+-..+.++++.+++.+ ..-+..+++-+. .....+.++++++....+ -+ -.|... ...++.+.+
T Consensus 2 ~~~~iiaVlr~~~~~~a~~~~~al~~~Gi~~iEitl~--t~~a~~~i~~l~~~~~~~----~i-GaGTV~~~~~~~~a~~ 74 (190)
T cd00452 2 KAQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLR--TPGALEAIRALRKEFPEA----LI-GAGTVLTPEQADAAIA 74 (190)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHHCCCC----EE-EECCCCCHHHHHHHHH
T ss_conf 8697799997799999999999999869988999678--802999999999868980----89-6523477999999998
Q ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC------CC
Q ss_conf 675089972460467777653023553-10466641477768876520121048876544542110244311------13
Q gi|254780453|r 89 MGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI------VC 161 (238)
Q Consensus 89 ~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv------V~ 161 (238)
.|++++- +|+.-.+..+.+++.+. .+-|+. |. .+. ..|.+.|++-+ ..
T Consensus 75 aGa~Fiv---sP~~~~~v~~~a~~~~~~~iPGv~--Tp---sEi-----------------~~A~~~G~~~vK~FPa~~~ 129 (190)
T cd00452 75 AGAQFIV---SPGLDPEVVKAANRAGIPLLPGVA--TP---TEI-----------------MQALELGADIVKLFPAEAV 129 (190)
T ss_pred CCCCEEE---CCCCCHHHHHHHHHCCCCEECCCC--CH---HHH-----------------HHHHHCCCCEEEECCCCCC
T ss_conf 5998997---377999999999982996657879--99---999-----------------9999879998998955114
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC
Q ss_conf 410344554420244035510113578657984003698999965998999985330
Q gi|254780453|r 162 SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV 218 (238)
Q Consensus 162 s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~ 218 (238)
.+.-++.++.-++.-.++-|.||.+.+ -.+-+++|+..+=+|...+
T Consensus 130 G~~~lkal~~pfp~~~~~ptGGI~~~N-----------~~~yl~~gv~avG~g~~l~ 175 (190)
T cd00452 130 GPAYIKALKGPFPQVRFMPTGGVSLDN-----------AAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred CHHHHHHHHCCCCCCCEEEECCCCHHH-----------HHHHHHCCCEEEEECHHCC
T ss_conf 999999985548999389967999888-----------9999968998999541258
No 193
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=86.17 E-value=2.9 Score=22.11 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=105.2
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCH----HHHHHHHHHC-HHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 9960799899999999738852289986899842558----9999998515-4667877640424678987765215675
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGL----ELARDLISDG-KSVFLDMKLFDIGSSVTAAIEHIANMGV 91 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~----~~i~~l~k~~-~~If~D~K~~DIpnTv~~~v~~~~~~g~ 91 (238)
+=||..|+++..++.+ .+.+.++=.+.-++...|. ..++++.+.. .++++-. +.|=.+.+....+.+.+++-
T Consensus 2 lflDtad~~~i~~~~~--~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~ls~qv-~~~~~~~m~~~a~~l~~~~~ 78 (211)
T cd00956 2 IFLDTADLEEIKKASE--TGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQV-VSTDAEGMVAEARKLASLGG 78 (211)
T ss_pred EEEECCCHHHHHHHHC--CCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEE-EECCHHHHHHHHHHHHHHCC
T ss_conf 8987489999999864--89937582688999874999999999999985499889999-73879999999999997389
Q ss_pred EEEE-EECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 0899-7246046777765302355310466641477768876-5201210488765445421102443111341034455
Q gi|254780453|r 92 AMLT-VHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR-ESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMV 169 (238)
Q Consensus 92 d~iT-vH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~-~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~i 169 (238)
+++. |-+....++++.+.. ..+.++. +|..-|....-+. +.|. +++--+..+-.+.|.+|+ ..++.+
T Consensus 79 ni~vKIP~t~~gl~ai~~L~-~~gi~~n-~Tav~s~~Qa~~Aa~aga-----~yvspf~GRi~d~G~d~~----~~i~~~ 147 (211)
T cd00956 79 NVVVKIPVTEDGLKAIKKLS-EEGIKTN-VTAIFSAAQALLAAKAGA-----TYVSPFVGRIDDLGGDGM----ELIREI 147 (211)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCCEE-EEEECCHHHHHHHHHCCC-----CEEEEECCCHHHCCCCHH----HHHHHH
T ss_conf 57999268565999999999-8599767-775068999999998799-----788630340754589859----999999
Q ss_pred HHHH---CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC----CCCCHHHHHHHHHHH
Q ss_conf 4420---244035510113578657984003698999965998999985330----888889999999998
Q gi|254780453|r 170 REIV---GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV----RAADPVSAAQEFQRA 233 (238)
Q Consensus 170 r~~~---~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~----~a~dP~~aa~~i~~~ 233 (238)
++.+ +.+..++.-.+|-.. ...+|...|+|++-+.-++. ...-..++.+.|.+.
T Consensus 148 ~~~~~~~~~~tkiL~AS~R~~~----------~v~~a~~~G~d~iTip~~vl~~l~~~~~T~~~v~~F~~D 208 (211)
T cd00956 148 RTIFDNYGFDTKILAASIRNPQ----------HVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLED 208 (211)
T ss_pred HHHHHHCCCCEEEEEEECCCHH----------HHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999982998268852048899----------999999869999984999999997690389999999998
No 194
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.11 E-value=2.9 Score=22.09 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=24.2
Q ss_pred HHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999965998999985330888889999999998665
Q gi|254780453|r 200 PETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 200 p~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
..+.+.+||+.+=|+.++|+ .| ...+++.+++..
T Consensus 249 a~e~i~aGAs~VQv~Tav~~--Gp-~~~~~i~~~L~~ 282 (301)
T PRK07259 249 AIEFMMAGASAVQVGTANFI--DP-YAFPEIIEGLEA 282 (301)
T ss_pred HHHHHHCCCCHHHHHHHHHC--CC-HHHHHHHHHHHH
T ss_conf 99999839879872123314--90-699999999999
No 195
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=85.41 E-value=3.1 Score=21.88 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=106.3
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHH---HHHHHHH---CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 996079989999999973885228998689984255899---9999851---5466787764042467898776521567
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLEL---ARDLISD---GKSVFLDMKLFDIGSSVTAAIEHIANMG 90 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~---i~~l~k~---~~~If~D~K~~DIpnTv~~~v~~~~~~g 90 (238)
+=||.-|+++..++.+. +.++++-.+.-++...|... ++++.+. ..++++- -+.|-+..+....+.+.+|+
T Consensus 3 ~flDtAd~~ei~~~~~~--g~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~l~~e-v~~~d~~~m~~~a~~l~~~~ 79 (220)
T PRK12655 3 LYLDTANVAEVERLARI--LPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQ-TMSRDAQGMVEEAKRLRNAI 79 (220)
T ss_pred EEEECCCHHHHHHHHCC--CCCCEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHHC
T ss_conf 99974899999999707--9947582899999865998799999999982899978999-95599999999999999747
Q ss_pred CEEEE-EECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 50899-72460467777653023553104666414777688765201210488765445421102443111341034455
Q gi|254780453|r 91 VAMLT-VHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMV 169 (238)
Q Consensus 91 ~d~iT-vH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~i 169 (238)
-+.+. |-...+.++++.+..+ .+.++. +|..-|..+.-+...-... +|--+..+-.+.|.||+ ..++.+
T Consensus 80 ~~ivVKIP~t~~Gl~ai~~L~~-~gi~vn-~Tavys~~Qa~~Aa~aGA~----YvsPyvGR~~d~G~Dg~----~~i~~i 149 (220)
T PRK12655 80 PGIVVKIPVTAEGLAAIKKLKK-EGIPTL-GTAVYSAAQGLLAALAGAK----YVAPYVNRVDAQGGDGI----RMVQEL 149 (220)
T ss_pred CCEEEECCCCHHHHHHHHHHHH-CCCCEE-EEECCCHHHHHHHHHCCCC----EEEEEHHHHHHCCCCHH----HHHHHH
T ss_conf 8739986887789999999998-699789-9851789999999985997----89632105755589848----999999
Q ss_pred HHHH---CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC----CCCHHHHHHHHHHHH
Q ss_conf 4420---2440355101135786579840036989999659989999853308----888899999999986
Q gi|254780453|r 170 REIV---GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR----AADPVSAAQEFQRAI 234 (238)
Q Consensus 170 r~~~---~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~----a~dP~~aa~~i~~~i 234 (238)
++.+ +.+..++.--||-.. ...++...|+|++-|.-.|.+ .+-..++++.|.+.-
T Consensus 150 ~~~~~~~~~~tkILaASiR~~~----------~v~~a~~~Gad~vTipp~v~~~l~~~plT~~~~~~F~~Dw 211 (220)
T PRK12655 150 QTLLEMHAPESMVLAASFKTPR----------QALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHHHCCCCCEEEEEECCCHH----------HHHHHHHCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999975999689998389999----------9999998699999819999999976902899999999999
No 196
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.08 E-value=1.5 Score=24.01 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHCCCCCCC---CCCHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 5421102443111---3410344554420244035-510113578657984003698999965998999985330888
Q gi|254780453|r 148 AVQARDIGMGGIV---CSPQEVRMVREIVGHNMVI-VTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 148 a~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~~~-itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
+..|.++|+|.+- .+|.+++.+-+...+...+ .+.||.+. +..+.-+.|.|||.+|.....++
T Consensus 201 ~~~a~~~g~diImLDNm~p~~ik~~v~~~~~~~~~EaSGgI~~~-----------ni~~yA~tGVD~IS~g~lths~~ 267 (277)
T PRK08072 201 VREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASGGITLE-----------NLPKYGGTGVDYISLGFLTHSVK 267 (277)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEECCHHCCCCC
T ss_conf 99998679989998798999999999961696499998899899-----------99999964999998681006997
No 197
>KOG2335 consensus
Probab=84.97 E-value=1.8 Score=23.45 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECH--H----------HHHCCCHHHHHHHHH-----HCHHHHHH-HHHC
Q ss_conf 8988999607998999999997388522899868--9----------984255899999985-----15466787-7640
Q gi|254780453|r 12 KKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGY--H----------LSFSGGLELARDLIS-----DGKSVFLD-MKLF 73 (238)
Q Consensus 12 k~~livALD~~~~~e~l~l~~~l~~~i~~iKig~--~----------l~~~~G~~~i~~l~k-----~~~~If~D-~K~~ 73 (238)
-.+|+|-.=..|.+.+++-++.+.||.++|-++. | .++...++++.++.+ .+.+|.+- +=+.
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335 73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 78669997479989999999986533472041589987888437726000238899999999998525998699998557
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 42467898776521567508997246
Q gi|254780453|r 74 DIGSSVTAAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 74 DIpnTv~~~v~~~~~~g~d~iTvH~~ 99 (238)
|+-.|+.- ++.+.+.|++++|||+=
T Consensus 153 d~~kTvd~-ak~~e~aG~~~ltVHGR 177 (358)
T KOG2335 153 DLEKTVDY-AKMLEDAGVSLLTVHGR 177 (358)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECC
T ss_conf 67878999-99998679868999365
No 198
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=84.90 E-value=1 Score=25.08 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCCCCCCCCH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf 4454211024431113410--344554420244035510113578657984003698999965998999985
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQ--EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~--ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
-+..+|.+.++||+-.+.. .+...|+++++..++ |. +.++ ..-..+|-+.|+||+-+|.
T Consensus 72 d~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iI---G~-----S~h~---~eea~~A~~~g~DYv~~Gp 132 (211)
T COG0352 72 DRVDLALAVGADGVHLGQDDMPLAEARELLGPGLII---GL-----STHD---LEEALEAEELGADYVGLGP 132 (211)
T ss_pred CCHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEE---EE-----ECCC---HHHHHHHHHCCCCEEEECC
T ss_conf 839999767998897087654558899741999789---83-----0499---9999998763999999888
No 199
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=84.88 E-value=1.1 Score=24.75 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=31.9
Q ss_pred HHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999965998999985330888889999999998665
Q gi|254780453|r 200 PETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 200 p~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
..+....|.+-+-|=|+||+|+||..+.+.|.+-++.
T Consensus 380 ~~~V~~tGV~siAVV~AIT~A~dp~~av~~f~~~~~~ 416 (439)
T PRK12290 380 AEQVWQCGVSSLAVVRAITLAEDPKLVIEFFDQVMAE 416 (439)
T ss_pred HHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHHHHHCC
T ss_conf 8999981998179886333289989999999987242
No 200
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.74 E-value=1.5 Score=24.00 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCH
Q ss_conf 54211024431113---4103445544202440-3551011357865798400369899996599899998533088888
Q gi|254780453|r 148 AVQARDIGMGGIVC---SPQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADP 223 (238)
Q Consensus 148 a~~a~~~g~~GvV~---s~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP 223 (238)
+..+.++|+|.+-+ ||.+++..-+.+++.. +-.+.||.+++ ..+.-+.|.|||.+|..-. |..|
T Consensus 210 ~~~a~~~g~DiIlLDNms~~~i~~av~~i~~~~~lEaSGgI~~~n-----------i~~yA~tGVD~IS~g~Lth-sa~~ 277 (290)
T PRK06559 210 AEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTT-----------ISRFRGLAIDYVSSGSLTH-SAKS 277 (290)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHCC-CCCC
T ss_conf 999986699999987989999999999857967999978998999-----------9999973999998882206-9964
No 201
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=84.53 E-value=3.4 Score=21.62 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=13.1
Q ss_pred CCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 998999985330888889999999
Q gi|254780453|r 207 GASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 207 GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
++|-+-||-++.+++||.++.++.
T Consensus 232 ~~~~~LvGe~lmr~~d~~~~~r~l 255 (459)
T PRK09427 232 FVNGFLIGSSLMAEDDLDLAVRKL 255 (459)
T ss_pred HCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 399999785875799989999997
No 202
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.48 E-value=0.87 Score=25.50 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE---CCC-HH---HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHC
Q ss_conf 4667877640424678987765215675089972---460-46---7777653023553104666414777688765201
Q gi|254780453|r 64 KSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH---AYP-QT---MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGY 136 (238)
Q Consensus 64 ~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH---~~~-~~---l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~ 136 (238)
+++-+.++++=|-..+ ..++.+.+.|++++-.- .+. +. .+++.+..+.++..++.
T Consensus 7 ~~~~~~~g~Y~i~d~~-~~ve~al~gGv~~vQlR~K~~~~~e~~~~a~~~~~l~~~~~v~lII----------------- 68 (211)
T PRK03512 7 PPVPFRLGLYPVVDSV-QWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYNARLFI----------------- 68 (211)
T ss_pred CCCCCCCEEEEECCCH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEE-----------------
T ss_conf 9885237347535969-9999999879999998179999999999999999999980985999-----------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 21048876544542110244311134103--4455442024403551011357865798400369899996599899998
Q gi|254780453|r 137 EKDISDMVRMRAVQARDIGMGGIVCSPQE--VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 137 ~~~~~~~v~~~a~~a~~~g~~GvV~s~~e--i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
..+..+|...+.+||-..-.+ ++.+|+++++++++ |+... +.. -...|...|+||+-+|
T Consensus 69 --------ND~vdlA~~~~AdGVHLGq~Dl~~~~aR~~lg~~~iI---G~S~h-----~~~---e~~~A~~~gaDYig~G 129 (211)
T PRK03512 69 --------NDYWRLAIKHQAYGVHLGQEDLETTDLNAIRAAGLRL---GVSTH-----DDM---EIDVALAARPSYIALG 129 (211)
T ss_pred --------ECCHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCEE---EEECC-----CHH---HHHHHHHCCCCEEEEC
T ss_conf --------7868999971998896596536889999866999789---97429-----999---9999986499839985
No 203
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=84.23 E-value=1.9 Score=23.29 Aligned_cols=53 Identities=26% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHHH
Q ss_conf 445544202440355101135786579840036989999659-9899998533088888999999
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.+.+|+.+ +-.++.+.||+-. ...+++++.| +|++-+||+.+...|-...+++
T Consensus 277 a~~ik~~~-~~pvi~~G~i~~~----------~~ae~~l~~g~~D~V~~gR~~ladPd~v~k~~~ 330 (343)
T cd04734 277 AARIKQAV-DLPVFHAGRIRDP----------AEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred HHHHHHHC-CCCEEEECCCCCH----------HHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHC
T ss_conf 99999972-9859997998999----------999999987996216978999978119999976
No 204
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.23 E-value=1.5 Score=23.89 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHCCCCCCC---CCCHHHHHHHHHHCC-----CC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC
Q ss_conf 5421102443111---341034455442024-----40-35510113578657984003698999965998999985330
Q gi|254780453|r 148 AVQARDIGMGGIV---CSPQEVRMVREIVGH-----NM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV 218 (238)
Q Consensus 148 a~~a~~~g~~GvV---~s~~ei~~ir~~~~~-----~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~ 218 (238)
+..|.++|++.+- .||.+++.+.+.+.. .. +-++.||.+++ ..+.-+.|.|||.+|..+.
T Consensus 196 ~~~a~~~g~d~I~LDn~s~e~~~~~v~~l~~~~~~~~v~ieaSGGI~~~n-----------i~~ya~tGVD~IS~g~lt~ 264 (279)
T PRK08385 196 ALKAAKAGADIIMLDNMTPEEIREVIEALKELGLREKVKIEVSGGITPET-----------IAEYAKLDVDVISLGALTH 264 (279)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHC
T ss_conf 99999769999998499999999999998750768978999978998999-----------9999855989998497776
Q ss_pred CCC
Q ss_conf 888
Q gi|254780453|r 219 RAA 221 (238)
Q Consensus 219 ~a~ 221 (238)
.++
T Consensus 265 s~~ 267 (279)
T PRK08385 265 SVR 267 (279)
T ss_pred CCC
T ss_conf 996
No 205
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.20 E-value=1.7 Score=23.55 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 421102443111---341034455442024403-5510113578657984003698999965998999985330888
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
..+.++|+|.+- .||.+++..-+.+++... -.+.||.+++ ..+.-+.|.|||.+|.-...++
T Consensus 207 ~~a~~~g~D~ImLDnms~~~i~~av~~i~~~~~lEaSGgI~~~n-----------i~~yA~tGVD~IS~galt~s~~ 272 (281)
T PRK06543 207 EPVLAAGVDTIMLDNFTLDQLREGVELIDGRAIVEASGNVSLNT-----------VPAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHCCCCC
T ss_conf 99997499999977989999999999757937999988999999-----------9999973999998382006997
No 206
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=84.04 E-value=0.97 Score=25.18 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCCCCCCCH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf 454211024431113410--344554420244035510113578657984003698999965998999985
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ--EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~--ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
...+|.+.|++|+-.+.. .+..+|+.++++.++ |+.-. +.. ....|.+.|+||+.+|-
T Consensus 64 ~~~lA~~~~~dGvHl~~~d~~~~~~r~~~~~~~ii---G~S~h--~~~------e~~~a~~~g~DYi~~gp 123 (196)
T cd00564 64 RVDLALAVGADGVHLGQDDLPVAEARALLGPDLII---GVSTH--SLE------EALRAEELGADYVGFGP 123 (196)
T ss_pred HHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCEE---EECCC--CHH------HHHHHHHHCCCEEEECC
T ss_conf 69999973998795584668999999872889758---82478--899------99998870999388646
No 207
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=83.61 E-value=2.3 Score=22.74 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=41.0
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHH--H-CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 421102443111---341034455442--0-244035510113578657984003698999965998999985330888
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREI--V-GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~--~-~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
..|.++|.|=+- .||++++.+-+. . +.-.+-.+.||.++ |..+.-+.|.|||.+|.+.+.++
T Consensus 202 ~eAl~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~-----------ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 202 EEALEAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLE-----------NIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEEECCCCCCCC
T ss_conf 999974999999769999999999997444776699975897877-----------89998626997998073304775
No 208
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=83.19 E-value=3.9 Score=21.26 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEE-CCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 678987765215675089972-460--46777765302355310466641477768876520121048876544542110
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTVH-AYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARD 153 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTvH-~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~ 153 (238)
|.|...++.+.+.|+|.+-|- +.. ..|+.+.++.++.+..+-+....| .+.. + ..+...++++...+
T Consensus 97 ~vv~~fv~~~~~~GidifRiFD~LNdv~nm~~~~~~v~~~G~~~e~~i~yt-~sP~------h---t~~yy~~~a~~l~~ 166 (580)
T PRK09282 97 DVVEKFVEKAAENGIDVFRIFDALNDVRNMETAIKAVKKVGAHAQGTISYT-TSPV------H---TLETWVDLAKQLEE 166 (580)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEE-CCCC------C---CHHHHHHHHHHHHH
T ss_conf 899999999997699789974012325778999999984598799999971-5887------6---38999999999997
Q ss_pred CCCCCCC-------CCCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 2443111-------34103----445544202440355101135786579840036989999659989999
Q gi|254780453|r 154 IGMGGIV-------CSPQE----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 154 ~g~~GvV-------~s~~e----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
.|++.+. +.|.. ++.+|+.++ . | |.+...++. +--++|--.|+++|+|++=+
T Consensus 167 ~G~d~i~iKDmaGll~P~~a~~LV~alk~~~~--l----p-I~~HtH~t~-G~~~a~~l~A~eAGvdivD~ 229 (580)
T PRK09282 167 MGCDSICIKDMAGLLTPYAAYELVSALKKEVD--L----P-VHLHCHATT-GLATMTYLKAVEAGVDILDT 229 (580)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--C----C-EEEEECCCC-CHHHHHHHHHHHHCCCEEEE
T ss_conf 49988997266557898999999999998619--8----1-699824776-47999999999848886700
No 209
>PRK05211 consensus
Probab=83.14 E-value=3.9 Score=21.25 Aligned_cols=188 Identities=14% Similarity=0.135 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHH-CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHH------HHHHHHCCCCCEEEEE
Q ss_conf 89999999973885228998689984-2558999999851546678776404246789------8776521567508997
Q gi|254780453|r 24 VKEAERIVSILSDTVSFYKIGYHLSF-SGGLELARDLISDGKSVFLDMKLFDIGSSVT------AAIEHIANMGVAMLTV 96 (238)
Q Consensus 24 ~~e~l~l~~~l~~~i~~iKig~~l~~-~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~------~~v~~~~~~g~d~iTv 96 (238)
.+.+..+-+.=.+++..+=+--.+.- ....++|+++.+. ..+|=|+- ..++.+.+.|+|-+.+
T Consensus 24 ~~~ak~~~~~gadelhivDld~a~~g~~~n~~~I~~i~~~----------~~~Pl~vGGGIrs~~~i~~ll~~GadkVii 93 (248)
T PRK05211 24 VPLAKRYAEEGADELVFYDITASSDGRVVDKSWVSRVAEV----------IDIPFCVAGGIKSVEDAREILSFGADKISI 93 (248)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH----------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999999986999899997867767872149999999976----------798589627801389999999879988998
Q ss_pred ECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH---HHHC---CCCHHHHHHHHHHHHHHCCCCCCCC-----
Q ss_conf 246----046777765302355310466641477768876---5201---2104887654454211024431113-----
Q gi|254780453|r 97 HAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR---ESGY---EKDISDMVRMRAVQARDIGMGGIVC----- 161 (238)
Q Consensus 97 H~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~---~~g~---~~~~~~~v~~~a~~a~~~g~~GvV~----- 161 (238)
... |..++++.+..... .-++++-.--........ ..|. +....-.+..+++...+.|+.-+++
T Consensus 94 gs~a~~np~li~~~~~~fG~q-~IvvsiD~~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~Idr 172 (248)
T PRK05211 94 NSPALADPTLITRLADRFGVQ-CIVVGIDSWFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQ 172 (248)
T ss_pred CCHHHHCCHHHHHHHHHCCCC-EEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 976761961899999857993-6999997102555785799982586565304773699999999975986699989878
Q ss_pred ----CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH-HCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf ----41034---45544202440355101135786579840036989999-65998999985330888889999999998
Q gi|254780453|r 162 ----SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL-KYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 162 ----s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
.+-++ +.+++.+ +-.++.+.|++-.. .-.+++ ..|++-+++|+.+|..+-....+++|...
T Consensus 173 DG~~~G~dl~l~~~i~~~~-~iPvIasGGv~s~~----------di~~~~~~~~~~gvi~gs~~~~~~i~l~e~k~~L~~ 241 (248)
T PRK05211 173 DGVRNGYDLAQLKKVRAIC-HVPLIASGGAGTME----------HFLEAFRDADVDGALAASVFHKQIINIGELKQYLAA 241 (248)
T ss_pred CCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9972788999999999746-99999988889999----------999999867984133048888899999999999998
No 210
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.03 E-value=2 Score=23.14 Aligned_cols=196 Identities=18% Similarity=0.278 Sum_probs=96.4
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHH--------------------------HCCCHH-HHHHHHHH
Q ss_conf 578988999607998999999997388522899868998--------------------------425589-99999851
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLS--------------------------FSGGLE-LARDLISD 62 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~--------------------------~~~G~~-~i~~l~k~ 62 (238)
.=++++=+|--++.--++++.+..++ ..++++|+... .+.|.+ +.+.|++.
T Consensus 53 ~f~nPiGLAAGfDKn~e~~~~l~~lG--FGfvEvGTVT~~pq~GNpkPR~fRl~~~~aliNr~GfnN~G~~~~~~~L~~~ 130 (336)
T PRK05286 53 TFPNPVGLAAGFDKNGEAIDALGALG--FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNEGADALAERLKKA 130 (336)
T ss_pred ECCCCCEECCCCCCCCCCCCCHHHCC--CCEEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 46996755567899971037266568--6669970516998799999717981377637850577986899999999850
Q ss_pred C---HHHHHH-HHHCCH--HHHHHH---HHHHHCCCCCEEEEEECC-C-----------HHHHHHHHHHC----CCC--C
Q ss_conf 5---466787-764042--467898---776521567508997246-0-----------46777765302----355--3
Q gi|254780453|r 63 G---KSVFLD-MKLFDI--GSSVTA---AIEHIANMGVAMLTVHAY-P-----------QTMRSAVSVVR----DTG--I 115 (238)
Q Consensus 63 ~---~~If~D-~K~~DI--pnTv~~---~v~~~~~~g~d~iTvH~~-~-----------~~l~~~~~~~~----~~~--~ 115 (238)
. .++..- .|-.|. .+.++. .++.++.. +||++|.-+ | +.+++..+..+ +.+ .
T Consensus 131 ~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~INiSsPNT~glr~lq~~~~L~~ll~~v~~~~~~~~~~~ 209 (336)
T PRK05286 131 KPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPY-ADYFTVNISSPNTPGLRDLQAGEALDELLAALKEAQAELGKYV 209 (336)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 567886589976237884166899999999998263-7789997568998652000466999999999999998437888
Q ss_pred CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------HHH
Q ss_conf 104666414777688765201210488765445421102443111341-----------------------------034
Q gi|254780453|r 116 CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSP-----------------------------QEV 166 (238)
Q Consensus 116 ~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~-----------------------------~ei 166 (238)
-++.- + |.|- -++.+...+..+.+.|++|+|++- .-+
T Consensus 210 PI~vK--i-sPDl-----------~~~~l~~i~~~~~~~~idGii~tNTt~~r~~l~~~~~~~~GGLSG~pl~~~s~~~v 275 (336)
T PRK05286 210 PLLLK--I-APDL-----------SDEELDDIADLALEHGIDGIIATNTTLDRSGLEGPNAEEAGGLSGRPLFERSTEVI 275 (336)
T ss_pred CEEEE--C-CCCC-----------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 64883--2-8888-----------87899999999998198689995886766445665556668746406789999999
Q ss_pred HHHHHHHCCCCEEE-EECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 45544202440355-101135786579840036989---999659989999853308888899999999986651
Q gi|254780453|r 167 RMVREIVGHNMVIV-TPGIRMLGSATDGQKRFATPE---TALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 167 ~~ir~~~~~~~~~i-tPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
+.+++..+..+.++ +.|| .|++ +-+++|||.+=+.-+..- +.| ..+++|.++++.+
T Consensus 276 ~~~~~~~~~~~pIIgvGGI-------------~s~~da~~~i~aGAslVQlyTgliy-~GP-~lv~~I~~~L~~l 335 (336)
T PRK05286 276 RRLYKELGGRLPIIGVGGI-------------DSAEDAYEKIRAGASLVQIYSGLIY-EGP-GLVKEIVRGLARL 335 (336)
T ss_pred HHHHHHCCCCCCEEEECCC-------------CCHHHHHHHHHCCCCHHHHHHHHHH-CCH-HHHHHHHHHHHHH
T ss_conf 9999973999709998998-------------9999999999869968874167872-190-7999999999975
No 211
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.01 E-value=4 Score=21.22 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98776521567508997246----04677776530235531046664147776887652012104887654454211024
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIG 155 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g 155 (238)
...++.+.++|++-+++.+. |+.+.++.+..... .-++++-. .++....--|+...- ...........+.|
T Consensus 84 ~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~~~~G~~-~iv~siD~---~~~~~v~~~Gw~~~~-~~~~~~i~~~~~~g 158 (231)
T PRK13586 84 VEKAERLLSYDCSAIVMSTLPFTNPDTFRRIVAGIGEN-RVLVSVDY---DDRKYVLIKGWKEKS-MKVEDAISHVNSLE 158 (231)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHHCCC-CEEEEEEE---CCCCEEEEECCCCCC-CCHHHHHHHHHHCC
T ss_conf 99999999779988997688876959999999984996-68999997---589689984872688-66999999999759
Q ss_pred CCCCCC---------CCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 431113---------410344554420-24403551011357865798400369899996599899998533088
Q gi|254780453|r 156 MGGIVC---------SPQEVRMVREIV-GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 156 ~~GvV~---------s~~ei~~ir~~~-~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
+.++++ ++.++...+... -....+++.||+-. +| -.+..+.|++-+|+|+++|+-
T Consensus 159 ~~~ii~TdI~~DGt~~G~d~~l~~~i~~~~~~~i~aGGi~s~----~D------i~~L~~~G~~gaivG~Aly~G 223 (231)
T PRK13586 159 SLGVIFTYVCNEGTKNGIDNNVKRYVKLVKGEKEYAGGIGSI----QD------LQKLKKMGFDYAIVGMSFYAG 223 (231)
T ss_pred CCEEEEEEECCHHCCCCCCHHHHHHHHHCCCCCEEECCCCCH----HH------HHHHHHCCCCEEEEEHHHHCC
T ss_conf 988999764511203689989999998718995998688999----99------999986799889999788688
No 212
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=82.97 E-value=4 Score=21.21 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH---HHCCCCCCCCCCH----HHHHHHHHHCCCCEEEEE--------------------CCCCCCCCCCC
Q ss_conf 88765445421---1024431113410----344554420244035510--------------------11357865798
Q gi|254780453|r 141 SDMVRMRAVQA---RDIGMGGIVCSPQ----EVRMVREIVGHNMVIVTP--------------------GIRMLGSATDG 193 (238)
Q Consensus 141 ~~~v~~~a~~a---~~~g~~GvV~s~~----ei~~ir~~~~~~~~~itP--------------------GI~~~~~~~~d 193 (238)
++.+..++++| -++|+| +|+|-. .+..+|+.++.+-+.=+| |-.++|+...=
T Consensus 144 D~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFRdA~~s~p~gdr~sY 222 (323)
T PRK13384 144 DATVENLVKQSVTAAKAGAD-MLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSY 222 (323)
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHCCCCCCCCCCC
T ss_conf 99999999999999974998-42603302668999999999779987467336666645303267898436767897400
Q ss_pred CCEECCHHHHHH-------CCCCEEEECCHHCC
Q ss_conf 400369899996-------59989999853308
Q gi|254780453|r 194 QKRFATPETALK-------YGASHIVVSRPIVR 219 (238)
Q Consensus 194 q~r~~tp~~Ai~-------~GaD~iVVGR~I~~ 219 (238)
|..+.+.++|+. .|||++.|=-++.-
T Consensus 223 Qmd~~n~~eA~~e~~~D~~EGAD~lmVKPa~~y 255 (323)
T PRK13384 223 QLDYANGRQALLEALLDEAEGADILMVKPGTPY 255 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 369988799999998547509998997377238
No 213
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.49 E-value=2.7 Score=22.31 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCC
Q ss_conf 421102443111---341034455442024403-5510113578657984003698999965998999985330888
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~ 221 (238)
..|.++|+|.+- .||.+++..-+.+.+... -.+.||.+++ ..+.-+.|.|+|.+|.....++
T Consensus 206 ~~al~~g~d~ImLDNmsp~~~~~av~~~~~~~~~EaSGgI~~~n-----------i~~yA~tGvD~IS~g~lthsa~ 271 (281)
T PRK06106 206 EEALELGVDAVLLDNMSPDTLREAVAIVAGRAITEASGRITPET-----------APAIAASGVDLISVGWLTHSAP 271 (281)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHCCCC
T ss_conf 99972799899987999999999999856846899978999999-----------9999973999998384326997
No 214
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family; InterPro: IPR006360 This entry represents a methyltransferase domain found in proteins which are involved in C1 metabolism in methanogenic archaea and methylotrophic bacteria. It is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (4.1.1.37 from EC). In methanogens, this domain is found in single-domain proteins catalysing the transfer of the methyl group of methylcobalamin to coenzymeM . In Methanosarcina barkeri these proteins have been shown to be involved in methanogenesis from C1 compounds such as methylamine and dimethylsulphide , CH3-cob(III)alamin + coenzymeM --> cob(I)alamin + CH3-coenzymeM In methylotrophic bacteria, this domain is found at the N-terminus of the bifunctional corrinoid-binding CmuA protein, which is involved in chloromethane utilisation. The pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , . CH3Cl + cob(I)alamin ---> CH3-cob(III)alamin + Cl- ; GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=81.32 E-value=1.1 Score=24.91 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=88.4
Q ss_pred HHHHHHHHHCCCCCEE-EECHHHHH----CCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE-
Q ss_conf 9999999738852289-98689984----2558999999851--54667877640424678987765215675089972-
Q gi|254780453|r 26 EAERIVSILSDTVSFY-KIGYHLSF----SGGLELARDLISD--GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH- 97 (238)
Q Consensus 26 e~l~l~~~l~~~i~~i-Kig~~l~~----~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH- 97 (238)
.+..+.++.++.+-++ -++-|+-. ..+.++++++.+. .++=|+|+= .|+ +..+.+.-.+.|+|.+.+-
T Consensus 131 a~~~l~~r~~~~~p~i~~~~gP~t~A~~~~~~~~f~~~~~~~~d~~~~~~e~a-~d~---~~aya~~m~e~Gadv~~i~D 206 (350)
T TIGR01463 131 AIKILRERYGDELPIIGSMEGPFTLAQDLIGVEEFLKWISTDPDLAKAVLELA-LDF---VIAYAKAMVEAGADVIAIAD 206 (350)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHH-HHH---HHHHHHHHHHCCCCEEECCC
T ss_conf 99999996388604168886646677664045888630368645799999998-899---99999988872520431157
Q ss_pred --CC-----CHHHH--------HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf --46-----04677--------776530235531046664147776887652012104887654454211024431113-
Q gi|254780453|r 98 --AY-----PQTMR--------SAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVC- 161 (238)
Q Consensus 98 --~~-----~~~l~--------~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~- 161 (238)
+| |++-+ ......++ ....+|+.-...-+.-| ..-.++|++||=.
T Consensus 207 P~aS~dL~~petY~~F~lp~~kr~~~~~KE--i~~~~~lHiCg~t~~~L-----------------~~i~~~G~~~~s~d 267 (350)
T TIGR01463 207 PVASSDLISPETYKEFVLPYQKRLVAEIKE--IDGITVLHICGKTQKIL-----------------RDIAKSGVEGFSVD 267 (350)
T ss_pred CCCCCCCCCCHHHHHHCCHHHHHHHHHHHC--CCCCEEEEECCCCHHHH-----------------HHHHHCCCCCCCCC
T ss_conf 666700057145686314178889876211--26866884037714567-----------------88986488743255
Q ss_pred -CCHHHHHHHHHHCCCCE---------EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHH
Q ss_conf -41034455442024403---------55101135786579840036989999659989999853308888899999999
Q gi|254780453|r 162 -SPQEVRMVREIVGHNMV---------IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQ 231 (238)
Q Consensus 162 -s~~ei~~ir~~~~~~~~---------~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~ 231 (238)
.+.-....|++.|.... .+-+|-. .+.-+|- ....++++.+|.|++-+|=.|-- --|.+..+.+.
T Consensus 268 ~~~g~~~~~~~v~G~~~~l~G~L~~~~~l~~GWt---td~~~~v-~~~a~~~~~~G~~iv~~GCdi~~-~tp~eNLka~v 342 (350)
T TIGR01463 268 EKPGIVAEAKKVIGDEASLVGNLDPVSTLLNGWT---TDTPEKV-KKLAKEVLENGVDIVAPGCDISF-MTPLENLKAMV 342 (350)
T ss_pred CCCCHHHHCCHHCCCEEEEEECCCHHHHCCCCCC---CCCHHHH-HHHHHHHHHCCCEEEECCCCCCC-CCCHHHHHHHH
T ss_conf 6566777611203872699753675875378886---6857899-99999998769728860477754-88558999999
Q ss_pred HHHHH
Q ss_conf 98665
Q gi|254780453|r 232 RAISL 236 (238)
Q Consensus 232 ~~i~~ 236 (238)
+.=+.
T Consensus 343 ~a~~~ 347 (350)
T TIGR01463 343 EACKE 347 (350)
T ss_pred HHHHC
T ss_conf 99731
No 215
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=81.19 E-value=4.6 Score=20.79 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=87.5
Q ss_pred EECCCHHHHHHHHHHHC--CC-CCEE---------EECHHHHHCCC--HHHHHHHHHHCH--HHHHHHHHCCHHHHHHHH
Q ss_conf 60799899999999738--85-2289---------98689984255--899999985154--667877640424678987
Q gi|254780453|r 19 LDLPTVKEAERIVSILS--DT-VSFY---------KIGYHLSFSGG--LELARDLISDGK--SVFLDMKLFDIGSSVTAA 82 (238)
Q Consensus 19 LD~~~~~e~l~l~~~l~--~~-i~~i---------Kig~~l~~~~G--~~~i~~l~k~~~--~If~D~K~~DIpnTv~~~ 82 (238)
|-..--+|..+++.+++ |. |+.+ +-||+.--..+ .+.++.++..|. .+|-| .| ..+
T Consensus 68 lE~~~~ee~~~~~~~~knkP~~vTlVPe~r~evTtegGLDva~~~dkL~~~~~~~~~~GI~vSlFId---~~-----~d~ 139 (265)
T TIGR00559 68 LEMAPTEEMIEIAVEIKNKPEKVTLVPEKRDEVTTEGGLDVARLKDKLKELVKRLHEAGIEVSLFID---AD-----KDQ 139 (265)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC---CC-----HHH
T ss_conf 1158518999999985589973874169886030264400011046799999999867985877425---44-----688
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76521567508997246046777765302355310466641477768876520121048876544542110244311134
Q gi|254780453|r 83 IEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCS 162 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s 162 (238)
++++.+.|+|.+=+|..+++- +..+..-+.+..+-++++|-.-+.+++.+--... .-+..+.+..|.+.|+. ||-
T Consensus 140 i~~A~e~g~~~iE~hTg~YA~-~~~~~~~nannqihaisvlkdksP~e~~~el~~a--flq~~~as~~A~~~GL~--v~A 214 (265)
T TIGR00559 140 ISAAAEVGADRIEIHTGVYAN-LYNKLYSNANNQIHAISVLKDKSPKELKEELQRA--FLQIKKASVYAKSLGLK--VNA 214 (265)
T ss_pred HHHHHHCCCCEEEEECCHHHH-HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHH--HHHHHHHHHHHHHCCCE--EEE
T ss_conf 899997089848850224689-8887741001321223111158868999999899--99999999999874986--861
Q ss_pred CHHHHH
Q ss_conf 103445
Q gi|254780453|r 163 PQEVRM 168 (238)
Q Consensus 163 ~~ei~~ 168 (238)
+|.+..
T Consensus 215 GHgL~y 220 (265)
T TIGR00559 215 GHGLNY 220 (265)
T ss_pred CCCCCH
T ss_conf 488877
No 216
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=81.01 E-value=1.9 Score=23.26 Aligned_cols=133 Identities=20% Similarity=0.338 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHCCC-CCEEEECHHHHHCCCHHHHHHHHHH-CHH--H--HHHHHHCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9989999999973885-2289986899842558999999851-546--6--78776404246789877652156750899
Q gi|254780453|r 22 PTVKEAERIVSILSDT-VSFYKIGYHLSFSGGLELARDLISD-GKS--V--FLDMKLFDIGSSVTAAIEHIANMGVAMLT 95 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~-i~~iKig~~l~~~~G~~~i~~l~k~-~~~--I--f~D~K~~DIpnTv~~~v~~~~~~g~d~iT 95 (238)
.+.|+=++++++|.+. |+.++-|+|.-...-.+.|+++.+. |.+ | |.=.+--||--+. +.|+|.+-
T Consensus 19 LT~EqK~~IA~KLDeLGVDvIEAGfpi~S~GE~~aiK~I~~~vGLnAEI~~l~RA~k~DID~Ai--------dcgvdsIh 90 (371)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKIAEEVGLNAEICSLARALKKDIDKAI--------DCGVDSIH 90 (371)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH--------HCCCCEEE
T ss_conf 8865689999999746982885476314514578999999862896355101026731001564--------36987789
Q ss_pred E-------EC---CC-----H---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7-------24---60-----4---67777653023553104666414777688765201210488765445421102443
Q gi|254780453|r 96 V-------HA---YP-----Q---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMG 157 (238)
Q Consensus 96 v-------H~---~~-----~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~ 157 (238)
+ |. +. + +.-+|++.+++++..+ .+|.+| -+++=-+.+.++.+.|.++|.|
T Consensus 91 ~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHGLiV-------EfSAED-----ATRtd~dfLIk~~k~A~eAGAD 158 (371)
T TIGR02090 91 TFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHGLIV-------EFSAED-----ATRTDIDFLIKVFKKAEEAGAD 158 (371)
T ss_pred EEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-------EECCCC-----CCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9804885787234888789999999999898775257355-------317788-----7658678999998713321677
Q ss_pred CC-------CCCCHH----HHHHHHHHC
Q ss_conf 11-------134103----445544202
Q gi|254780453|r 158 GI-------VCSPQE----VRMVREIVG 174 (238)
Q Consensus 158 Gv-------V~s~~e----i~~ir~~~~ 174 (238)
=+ |.+|+. ++.+++.+.
T Consensus 159 Ri~~~DTVGV~~P~km~~l~k~~k~~~k 186 (371)
T TIGR02090 159 RINVADTVGVLTPQKMEELIKKIKENVK 186 (371)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 7550785563682679999999998635
No 217
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=80.64 E-value=4.8 Score=20.67 Aligned_cols=84 Identities=12% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHH-HCCCCCEEEECHHHHHCCC--HHHHHHHHHHCHHHHHHH-HHCCHH---HHH-HHHHHHHCCCCCEE
Q ss_conf 998999999997-3885228998689984255--899999985154667877-640424---678-98776521567508
Q gi|254780453|r 22 PTVKEAERIVSI-LSDTVSFYKIGYHLSFSGG--LELARDLISDGKSVFLDM-KLFDIG---SSV-TAAIEHIANMGVAM 93 (238)
Q Consensus 22 ~~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G--~~~i~~l~k~~~~If~D~-K~~DIp---nTv-~~~v~~~~~~g~d~ 93 (238)
.+.+++++-+++ +..-.+++-||-+.--... ...-+|+.+.. |++.-+ +-++++ .|. ....+.+.+.|+++
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~-pvi~~i~~~~~v~iSIDT~~~~Va~~ale~Ga~i 113 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVI-PVVEAIAQRFEVWISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
T ss_conf 899999999999998899699979825899898689899999999-9999999735972999799889999999639788
Q ss_pred EE-EECCC--HHHHHH
Q ss_conf 99-72460--467777
Q gi|254780453|r 94 LT-VHAYP--QTMRSA 106 (238)
Q Consensus 94 iT-vH~~~--~~l~~~ 106 (238)
++ |.++. +|+..+
T Consensus 114 INDIsg~~d~~~~~~v 129 (282)
T PRK11613 114 INDIRSLSEPGALEAA 129 (282)
T ss_pred EECCCCCCCHHHHHHH
T ss_conf 8663212486599999
No 218
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=80.49 E-value=4.9 Score=20.64 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH--CCCCEEEECCH
Q ss_conf 455442024403551011357865798400369899996--59989999853
Q gi|254780453|r 167 RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK--YGASHIVVSRP 216 (238)
Q Consensus 167 ~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~--~GaD~iVVGR~ 216 (238)
+.+|+. .++..++..|..+. ..|++.++ .|.|++|+|-+
T Consensus 73 ~~ik~~-~p~~~iv~GG~~~t----------~~p~~~l~~~~~~D~vv~GEg 113 (121)
T pfam02310 73 RLLKRI-RPGVKVVVGGPHPT----------ADPEEVLRAAPGIDDVVRGEG 113 (121)
T ss_pred HHHHHH-CCCCEEEEECCCCC----------CCHHHHHHCCCCCCEEEECCC
T ss_conf 999985-98975998387634----------189999840899758998976
No 219
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.45 E-value=2.4 Score=22.66 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCCCCCCCC-EEEEEECCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 231157898-899960799899999999738852289986
Q gi|254780453|r 6 IIDVDEKKR-LVVGLDLPTVKEAERIVSILSDTVSFYKIG 44 (238)
Q Consensus 6 ~~~~~kk~~-livALD~~~~~e~l~l~~~l~~~i~~iKig 44 (238)
.|-|..+++ ++++.- .+.+=+.++++.|+-...-++++
T Consensus 9 ~~~m~~~~n~~ifsgs-s~~~LA~~Ia~~Lg~~l~~~~~~ 47 (340)
T PRK00553 9 SIIMHDKSNHVIFSLS-KAKKLVDSICRKLSMKPGEIVIQ 47 (340)
T ss_pred EEEECCCCCEEEEECC-CCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8998278867999779-98899999999859974131789
No 220
>KOG1643 consensus
Probab=78.71 E-value=5.5 Score=20.28 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=28.6
Q ss_pred HCCHHHHHHHHHHHHCCCCCEEEEE-EC-----CCH---HHHHHHHHHCCCCCCEEE
Q ss_conf 4042467898776521567508997-24-----604---677776530235531046
Q gi|254780453|r 72 LFDIGSSVTAAIEHIANMGVAMLTV-HA-----YPQ---TMRSAVSVVRDTGICLLA 119 (238)
Q Consensus 72 ~~DIpnTv~~~v~~~~~~g~d~iTv-H~-----~~~---~l~~~~~~~~~~~~~il~ 119 (238)
+.-=+.|-+-....+.++|+.++.+ |+ +++ .+.+-...+...+.++++
T Consensus 68 ~k~GafTGEiS~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~Via 124 (247)
T KOG1643 68 VKSGAFTGEISAEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIA 124 (247)
T ss_pred CCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 367663475689999867997899544666435077347899999999975875999
No 221
>PRK12376 putative translaldolase; Provisional
Probab=77.96 E-value=5.8 Score=20.14 Aligned_cols=190 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCH----HHHHHHHHH--CHHHHHHHHHCCHHHHHHHHH
Q ss_conf 57898899960799899999999738852289986899842558----999999851--546678776404246789877
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGL----ELARDLISD--GKSVFLDMKLFDIGSSVTAAI 83 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~----~~i~~l~k~--~~~If~D~K~~DIpnTv~~~v 83 (238)
.++=+.-+=||+.|+++..++.+. +.++++=.+.-++...|. .+++++.+. +.+|.+-- +.|-...+....
T Consensus 3 ~~~~~MKiflDtAdl~eI~~~~~~--g~i~GVTTNPsLl~k~G~~d~~~~~~~i~~~i~~~~is~EV-~~~~~~~mi~qA 79 (238)
T PRK12376 3 LAKLNVKIFADGADLEEMLKAYKN--PLVKGFTTNPSLMKKAGITDYKAFAKEVLAEIPDYPISFEV-FADDLETMEKEA 79 (238)
T ss_pred CCCCEEEEEEECCCHHHHHHHHCC--CCCCEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHHHHHHH
T ss_conf 563516999866899999999628--99157907889998669997899999999638998779999-568778899999
Q ss_pred HHHCCCCCEEEE-EECC-CH---HHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 652156750899-7246-04---67777653023553104666414777688-765201210488765445421102443
Q gi|254780453|r 84 EHIANMGVAMLT-VHAY-PQ---TMRSAVSVVRDTGICLLAVTVLTSMDDFD-LRESGYEKDISDMVRMRAVQARDIGMG 157 (238)
Q Consensus 84 ~~~~~~g~d~iT-vH~~-~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~-l~~~g~~~~~~~~v~~~a~~a~~~g~~ 157 (238)
+.+.+|+-+.+. |-.. .+ .++...+.. ..+.++- ||..-|..+.. ....+. .....+|.-+..+-.+.|.|
T Consensus 80 ~~l~~~~~nv~VKIP~t~~~G~~~~~~ik~L~-~~Gi~vn-vTaifs~~Qa~~a~~A~a-~~~a~yvSpfvGRi~D~G~D 156 (238)
T PRK12376 80 EILASLGENVYVKIPITNTKGESTIPLIKKLS-ADGIKLN-VTAIFTIEQVKEVVDALT-PGVPSIVSVFAGRIADTGVD 156 (238)
T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEE-EEEEECHHHHHHHHHHCC-CCCCEEEEEECCHHHHCCCC
T ss_conf 99997589779997785755189999999998-8799668-999827999999998527-77882775121308655998
Q ss_pred CCCCCCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 11134103445544202--440355101135786579840036989999659989999853308
Q gi|254780453|r 158 GIVCSPQEVRMVREIVG--HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 158 GvV~s~~ei~~ir~~~~--~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
|+ ..++.+++++. ++..++.--+|-.. ...+|...|||++=|.-.+.+
T Consensus 157 g~----~~i~~~~~i~~~~~~tkILaASiR~~~----------~v~~a~~~GadiiTipp~vl~ 206 (238)
T PRK12376 157 PL----PLMKEALKICHQKPGVELLWASPRELY----------NIIQADQLGCDIITVTADILK 206 (238)
T ss_pred CH----HHHHHHHHHHHCCCCEEEEEEECCCHH----------HHHHHHHCCCCEEECCHHHHH
T ss_conf 27----999999999842887499997148889----------999999869999984999999
No 222
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=77.43 E-value=3.4 Score=21.65 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=93.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHC---CCCCEEEECH--HHHHC-CCH----------HHHHHHHHH-CHHHHHHHH--HCC
Q ss_conf 8899960799899999999738---8522899868--99842-558----------999999851-546678776--404
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILS---DTVSFYKIGY--HLSFS-GGL----------ELARDLISD-GKSVFLDMK--LFD 74 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~---~~i~~iKig~--~l~~~-~G~----------~~i~~l~k~-~~~If~D~K--~~D 74 (238)
|||.++==.+.||.-++++.+. +|+++|+++. |=... +|. ++++++|+. +.|||.=|= .+|
T Consensus 95 r~I~svyG~~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G~G~~iG~dP~l~~~vv~avK~~~d~Pv~aKLsPNV~D 174 (308)
T TIGR01037 95 RLIASVYGESEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGGGGIEIGQDPELSADVVKAVKDKVDVPVFAKLSPNVTD 174 (308)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHH
T ss_conf 89998318882258999998721134400001047774434234655477877999999998300078657864865668
Q ss_pred HHHHHHHHHHHHCCCCCEEEEE-ECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCC-HHHHHHHHHHHH
Q ss_conf 2467898776521567508997-2460-467777653023553104666414777688765201210-488765445421
Q gi|254780453|r 75 IGSSVTAAIEHIANMGVAMLTV-HAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKD-ISDMVRMRAVQA 151 (238)
Q Consensus 75 IpnTv~~~v~~~~~~g~d~iTv-H~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~-~~~~v~~~a~~a 151 (238)
| .+-.+++.+.|+|.+|+ .... ||--+. ...+ + +|+ | .--|++.+ ++..+.+..
T Consensus 175 i----~eiA~a~eeaGaDGlt~INTl~PGMkIDI---~~~k-P-iLa--------N---k~GGlSGPAIKPiA~r~V--- 231 (308)
T TIGR01037 175 I----TEIAKAAEEAGADGLTLINTLRPGMKIDI---KAKK-P-ILA--------N---KTGGLSGPAIKPIAVRMV--- 231 (308)
T ss_pred H----HHHHHHHHHCCCCEEEEEHHHHHHHHHHH---HCCC-C-CCE--------E---CCCCCCCCCCCCEEEEEH---
T ss_conf 9----99988875327761640012034677734---2078-7-000--------0---458850750142212100---
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCCCEEEECCHHCCCCCHHHHH
Q ss_conf 10244311134103445544202-44035510113578657984003698999---965998999985330888889999
Q gi|254780453|r 152 RDIGMGGIVCSPQEVRMVREIVG-HNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGASHIVVSRPIVRAADPVSAA 227 (238)
Q Consensus 152 ~~~g~~GvV~s~~ei~~ir~~~~-~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa 227 (238)
.|+. +.++ .=.++=+.||+ |-++| +-+||..+=||-++|- +|-.+.
T Consensus 232 ------------Ydly---~~~ddriPIiGvGGi~-------------~~eDA~Efl~AGAsAVQvGtAvyy--~g~~~f 281 (308)
T TIGR01037 232 ------------YDLY---KEVDDRIPIIGVGGIT-------------SFEDALEFLMAGASAVQVGTAVYY--RGYKVF 281 (308)
T ss_pred ------------HHHH---HHHCCCCCEEEECCCC-------------CHHHHHHHHHHCCCEEEEEEEEEC--CCCCCC
T ss_conf ------------0047---7737823468632745-------------589999999852202200022211--775244
Q ss_pred HHHHHHHH
Q ss_conf 99999866
Q gi|254780453|r 228 QEFQRAIS 235 (238)
Q Consensus 228 ~~i~~~i~ 235 (238)
.++.++|-
T Consensus 282 ~~i~~~l~ 289 (308)
T TIGR01037 282 KKIIEGLI 289 (308)
T ss_pred HHHHHHHH
T ss_conf 88876788
No 223
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=77.34 E-value=6.1 Score=20.03 Aligned_cols=179 Identities=22% Similarity=0.205 Sum_probs=106.5
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCE-EEECHHHHHC----CCHHHHHHHHHH---CHH---------HH---HHHHH-C--
Q ss_conf 996079989999999973885228-9986899842----558999999851---546---------67---87764-0--
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSF-YKIGYHLSFS----GGLELARDLISD---GKS---------VF---LDMKL-F-- 73 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~-iKig~~l~~~----~G~~~i~~l~k~---~~~---------If---~D~K~-~-- 73 (238)
+||..++..+..+++++..|.+-. -=||.+-+.. +|.+-+.++.+. +.. ++ =|+-| .
T Consensus 97 aal~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~AdAL~iHlN~~QE~vqpEGDr~F~~G~ 176 (349)
T TIGR02151 97 AALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFSKGW 176 (349)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 21127124666999997679833787178788740653448899999998751013355432330255799970156538
Q ss_pred -----------CHHHHH--------HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHC-CCCCCEEEEEEECCCCHHHHHH
Q ss_conf -----------424678--------98776521567508997246046777765302-3553104666414777688765
Q gi|254780453|r 74 -----------DIGSSV--------TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVR-DTGICLLAVTVLTSMDDFDLRE 133 (238)
Q Consensus 74 -----------DIpnTv--------~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~-~~~~~il~Vt~LTS~~~~~l~~ 133 (238)
|+|=.| ...++.+++.|++++=|-+.||+=-+.+|..| ..+..
T Consensus 177 l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~----------------- 239 (349)
T TIGR02151 177 LEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESN----------------- 239 (349)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 999999996528987998215799889999998789008870787675599999887515752-----------------
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 20121048876544542110244311134103445544202-44035510113578657984003698999965998999
Q gi|254780453|r 134 SGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVG-HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 134 ~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ir~~~~-~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
+.+.+++..-.++|+. ++.=+..+|.... .-.++=|.|+|-. . ..-.|+..|||..=
T Consensus 240 --------~~~~r~a~~f~~WGip----T~~sL~~~~~~~~~~~~~iASGG~r~G---l-------D~AKAlALGA~~~G 297 (349)
T TIGR02151 240 --------QKYERLASAFSDWGIP----TAASLLEVRSIDAPDAPLIASGGLRTG---L-------DVAKALALGADAVG 297 (349)
T ss_pred --------CHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCCEEEECCCCCH---H-------HHHHHHHHHHHHHH
T ss_conf --------3578887777414886----689999986421247736884677788---8-------99999996211888
Q ss_pred ECCHHCCC-C-CHHHHHHHHHHHH
Q ss_conf 98533088-8-8899999999986
Q gi|254780453|r 213 VSRPIVRA-A-DPVSAAQEFQRAI 234 (238)
Q Consensus 213 VGR~I~~a-~-dP~~aa~~i~~~i 234 (238)
+-||+.++ . +..+...++.+.+
T Consensus 298 ~A~~~L~~~~~~g~e~~~~~~~~~ 321 (349)
T TIGR02151 298 MARPLLKAALDEGEEAVIEEIELI 321 (349)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 889999988526988999999999
No 224
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=77.10 E-value=3.2 Score=21.84 Aligned_cols=27 Identities=11% Similarity=0.307 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 445421102443111341034455442
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQEVRMVREI 172 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~ei~~ir~~ 172 (238)
+.|-...+.|.||+...+.++..+|+.
T Consensus 159 ~vA~eTLE~GaDgVll~~~d~~eIk~~ 185 (376)
T COG1465 159 RVALETLEKGADGVLLDSDDPEEIKKT 185 (376)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 889999854674489679998999999
No 225
>PRK04281 consensus
Probab=75.87 E-value=6.7 Score=19.77 Aligned_cols=141 Identities=17% Similarity=0.181 Sum_probs=69.2
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEE-CCCCHHH--HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8776521567508997246----046777765302355310466641-4777688--76520121048876544542110
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVL-TSMDDFD--LRESGYEKDISDMVRMRAVQARD 153 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~L-TS~~~~~--l~~~g~~~~~~~~v~~~a~~a~~ 153 (238)
..++.+.+.|+|-+.+-.. |..++++.+...... -++++-.- .+..+.. +...++.....-....++....+
T Consensus 87 e~~~~ll~~GadkViigs~a~~np~~l~~~~~~fG~q~-Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~ 165 (254)
T PRK04281 87 ADIRRLLNAGADKVSINTAAVTRPDLIDEAAGFFGSQA-IVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEWAVEMQK 165 (254)
T ss_pred HHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEE-EEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 88999997699889977767649267676787559821-79999888502468845999758864775449999999875
Q ss_pred CCCCCCCC---------CCHHHH---HHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCC
Q ss_conf 24431113---------410344---5544202440355101135786579840036989999659-9899998533088
Q gi|254780453|r 154 IGMGGIVC---------SPQEVR---MVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRA 220 (238)
Q Consensus 154 ~g~~GvV~---------s~~ei~---~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a 220 (238)
.|+..+++ .+.+++ .+++.. +-.++.+.|++-.. .-.++++.| +|-+++|+..+..
T Consensus 166 ~g~geil~tdI~rDGt~~G~d~~l~~~i~~~~-~iPvIasGGv~~~~----------di~~~~~~~~~~~v~~g~~~~~~ 234 (254)
T PRK04281 166 RGAGEILLTGMDRDGTKQGFNLPLTRAVAEAV-DIPVIASGGVGNVR----------HLIEGITEGKADAVLAAGIFHFG 234 (254)
T ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 29989999888578876876869999998616-99899978989999----------99999980898889764377779
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8889999999998
Q gi|254780453|r 221 ADPVSAAQEFQRA 233 (238)
Q Consensus 221 ~dP~~aa~~i~~~ 233 (238)
+--...|+++.+.
T Consensus 235 ~~sl~eak~~l~~ 247 (254)
T PRK04281 235 EIAIREAKRAMRE 247 (254)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9899999999998
No 226
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.57 E-value=2.3 Score=22.74 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=50.3
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCH---HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 899868998425589999998515466787764042---46789877652156750899724604677776530235531
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDI---GSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGIC 116 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DI---pnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~ 116 (238)
+.|.+.+-......+++++|.+++..+++|-+++.. |+.-......+.+ .+|++.+-+..|++-.+.+.....++-
T Consensus 11 i~k~~~~~a~~~~~~l~~~L~~~g~~v~ld~~~a~~l~~~~~~~~~~~~~~~-~~Dlvi~lGGDGT~L~aar~~~~~~~P 89 (292)
T PRK03378 11 VGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQ-QADLAVVVGGDGNMLGAARTLARYDIK 89 (292)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCC-CCCEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 9527985899999999999997899899834787652998655478668530-568999977788999999985436996
Q ss_pred EEEEE-----EECCCCHHHH
Q ss_conf 04666-----4147776887
Q gi|254780453|r 117 LLAVT-----VLTSMDDFDL 131 (238)
Q Consensus 117 il~Vt-----~LTS~~~~~l 131 (238)
++||- -||..+.+++
T Consensus 90 ilGIN~G~lGFLt~~~~~~~ 109 (292)
T PRK03378 90 VIGINRGNLGFLTDLDPDNA 109 (292)
T ss_pred EEEEECCCCEECCCCCHHHH
T ss_conf 89883798368886787899
No 227
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=75.37 E-value=6.9 Score=19.69 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCCCEEEECHHHHHCCCHHHHHHHHHH-CHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC---HHHHHHHHHHC
Q ss_conf 852289986899842558999999851-54667877640424678987765215675089972460---46777765302
Q gi|254780453|r 36 DTVSFYKIGYHLSFSGGLELARDLISD-GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP---QTMRSAVSVVR 111 (238)
Q Consensus 36 ~~i~~iKig~~l~~~~G~~~i~~l~k~-~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~---~~l~~~~~~~~ 111 (238)
+.+..+=+.-..-.....+.|+++.+. ..|+.++.-+-+ ...++.+.+.|++-+.+-... ..+....+...
T Consensus 50 ~~lhivDLda~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs-----~~~~~~~l~~Gadkvvigs~~~~~~~~~~~~~~~g 124 (233)
T cd04723 50 RGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-----LENAQEWLKRGASRVIVGTETLPSDDDEDRLAALG 124 (233)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHCCCCEEECCCHHCCCHHHHHHHHHHC
T ss_conf 9899997865469975399999999878998899702276-----99999998607201524510049989999999978
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCCCCCCCCHH---HHHHHHHHCCCCEEEEEC
Q ss_conf 35531046664147776887652012104887654454211-----0244311134103---445544202440355101
Q gi|254780453|r 112 DTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQAR-----DIGMGGIVCSPQE---VRMVREIVGHNMVIVTPG 183 (238)
Q Consensus 112 ~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~-----~~g~~GvV~s~~e---i~~ir~~~~~~~~~itPG 183 (238)
. +..++++-.- +. .....+......+.+..+...+. +..-+|.- ++.+ ++.+++.. +-.++.+.|
T Consensus 125 ~-~~ivvslD~k---~~-~~~~~~~~~~~~~~~~~~~~~~~eii~t~Id~dGt~-~G~d~~l~~~i~~~~-~~pvi~sGG 197 (233)
T cd04723 125 E-QRLVLSLDFR---GG-QLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSG-QGPDLELLERLAARA-DIPVIAAGG 197 (233)
T ss_pred C-CCEEEEEEEE---CC-CCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCC-CCCCHHHHHHHHHHC-CCCEEEECC
T ss_conf 9-9989999998---99-787246434899999999965895999864344656-777999999999868-998999889
Q ss_pred CCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHH
Q ss_conf 13578657984003698999965998999985330888889999
Q gi|254780453|r 184 IRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAA 227 (238)
Q Consensus 184 I~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa 227 (238)
|+-.. | -+...+.|+|-++||+++|...=+.+.+
T Consensus 198 v~s~~----d------i~~l~~~g~~gvivg~alh~g~i~l~e~ 231 (233)
T cd04723 198 VRSVE----D------LELLKKLGASGALVASALHDGGLTLEDV 231 (233)
T ss_pred CCCHH----H------HHHHHHCCCCEEEEEHHHHCCCCCHHHH
T ss_conf 99999----9------9999978998999863977899788997
No 228
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=75.36 E-value=6.9 Score=19.69 Aligned_cols=119 Identities=17% Similarity=0.293 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCCEEEEE--ECCC----H---------------HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC
Q ss_conf 898776521567508997--2460----4---------------677776530235531046664147776887652012
Q gi|254780453|r 79 VTAAIEHIANMGVAMLTV--HAYP----Q---------------TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE 137 (238)
Q Consensus 79 v~~~v~~~~~~g~d~iTv--H~~~----~---------------~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~ 137 (238)
....+..+..+++++++| |+.+ . +++-+....++.+ |-+|..||.-+.
T Consensus 17 L~~t~~~L~~l~P~FvSVTyGAgGs~~~~~~~G~l~~~~R~r~~T~~~~~~I~~~~~--~~~v~HLtC~~~--------- 85 (302)
T TIGR00676 17 LWETVDRLEQLDPDFVSVTYGAGGSTRDRLGDGLLKRRIRIRPGTVRIVRRIKKETG--IPTVPHLTCIGS--------- 85 (302)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCC---------
T ss_conf 999999974269985888654888524658897546664267778999999987328--863000002368---------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCC-----C--------------CHH-HHHHHHH--HC----------CCCEEEE---E
Q ss_conf 104887654454211024431113-----4--------------103-4455442--02----------4403551---0
Q gi|254780453|r 138 KDISDMVRMRAVQARDIGMGGIVC-----S--------------PQE-VRMVREI--VG----------HNMVIVT---P 182 (238)
Q Consensus 138 ~~~~~~v~~~a~~a~~~g~~GvV~-----s--------------~~e-i~~ir~~--~~----------~~~~~it---P 182 (238)
-.+.+....+...+.|+.-+|+ + |.| ++.||+. .+ .+|-|-. |
T Consensus 86 --t~~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F~I~VAaYP 163 (302)
T TIGR00676 86 --TREEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDFEIGVAAYP 163 (302)
T ss_pred --CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC
T ss_conf --989999999999874886798743768888865658876677689999998368998556477645765505564258
Q ss_pred CCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 113578657984003698999965998999
Q gi|254780453|r 183 GIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 183 GI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
=..++.. +-++-+..-+.=+++|||++|
T Consensus 164 E~Hpea~--~~~~D~~nLK~KVdAGAd~aI 191 (302)
T TIGR00676 164 EKHPEAP--NLEEDIENLKRKVDAGADYAI 191 (302)
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCCEE
T ss_conf 8788888--889999999998862778033
No 229
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.81 E-value=7.1 Score=19.60 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred CCCCCCEEEE--EECCCHHHHHHHHHHHCCCCCEEEECHHHHHCC----CHHHHHHHH--HHCHHHHHHHHHCCHHHHHH
Q ss_conf 1578988999--607998999999997388522899868998425----589999998--51546678776404246789
Q gi|254780453|r 9 VDEKKRLVVG--LDLPTVKEAERIVSILSDTVSFYKIGYHLSFSG----GLELARDLI--SDGKSVFLDMKLFDIGSSVT 80 (238)
Q Consensus 9 ~~kk~~livA--LD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~----G~~~i~~l~--k~~~~If~D~K~~DIpnTv~ 80 (238)
+...++++|| .|++|. -.-.+.+.+++....| ++++... |.. -+.+. ....|+.+-+ ++.=|.+++
T Consensus 7 ~~~~~~~~lAPM~gvTD~-~fR~l~R~~~~~~l~y---TEMvsa~al~~~~~-~~~l~~~~~E~Pv~vQl-~G~dp~~la 80 (333)
T PRK11815 7 KILPRRFSVAPMMDWTDR-HCRYFHRLLSRHALLY---TEMVTTGAIIHGDR-ERLLAFDPEEHPVALQL-GGSDPADLA 80 (333)
T ss_pred CCCCCCEEEECCCCCCCH-HHHHHHHHHCCCCEEE---ECCEEEHHHHCCCH-HHHHHCCCCCCCEEEEE-CCCCHHHHH
T ss_conf 116885586377998079-9999999977997798---69985146661798-88850698779879997-479999999
Q ss_pred HHHHHHCCCCCEEEEEECCC----------H--------HHHHHHHHHCCCCCCEEEEEEEC--CCCHHHHHHHHCCCCH
Q ss_conf 87765215675089972460----------4--------67777653023553104666414--7776887652012104
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYP----------Q--------TMRSAVSVVRDTGICLLAVTVLT--SMDDFDLRESGYEKDI 140 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~----------~--------~l~~~~~~~~~~~~~il~Vt~LT--S~~~~~l~~~g~~~~~ 140 (238)
.+++.+.++|+|.+.+...+ | -+.+++++.++.- . +-||+=+ -+|+. +-
T Consensus 81 ~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~-~-~PVTvK~RlG~d~~---------d~ 149 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-S-IPVTVKHRIGIDDQ---------DS 149 (333)
T ss_pred HHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCC---------CH
T ss_conf 9999998739885352389986887327801787079999999999998734-8-85357863167777---------52
Q ss_pred HHHHHHHHHHHHHCCCCCCCC----------CCH-----------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECC
Q ss_conf 887654454211024431113----------410-----------34455442024403551011357865798400369
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVC----------SPQ-----------EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFAT 199 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~----------s~~-----------ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~t 199 (238)
.+.+..++....++|++-+.. ||. .+.++++.+.+=.++...|| .|
T Consensus 150 ~~~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI-------------~s 216 (333)
T PRK11815 150 YEFLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI-------------KT 216 (333)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCC-------------CC
T ss_conf 89999999999975998899960278772678777505873048999999976678718845996-------------99
Q ss_pred HHHHHH--CCCCEEEECCHHCCC
Q ss_conf 899996--599899998533088
Q gi|254780453|r 200 PETALK--YGASHIVVSRPIVRA 220 (238)
Q Consensus 200 p~~Ai~--~GaD~iVVGR~I~~a 220 (238)
+++|.+ ..+|-+-+||+.+..
T Consensus 217 ~~~~~~~l~~~DGVMiGRga~~n 239 (333)
T PRK11815 217 LEEAKEHLQHVDGVMIGRAAYHN 239 (333)
T ss_pred HHHHHHHHHCCCEEEEHHHHHCC
T ss_conf 99999998559962114867559
No 230
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=74.62 E-value=7.2 Score=19.57 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=101.2
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCH------HHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 996079989999999973885228998689984255899999985154------66787764042467898776521567
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGK------SVFLDMKLFDIGSSVTAAIEHIANMG 90 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~------~If~D~K~~DIpnTv~~~v~~~~~~g 90 (238)
+=||+.|+++..++.+. +.++++-.+.-++...|....+.+++... ++++- =+.+-...+....+.+.+++
T Consensus 3 iflDtAd~~eIk~~~~~--~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~l~~q-v~~~~~e~M~~~a~~l~~~~ 79 (220)
T PRK12653 3 LYLDTSDVVAVKALSRI--FPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQ-VMATTAEGMVNDARKLRSII 79 (220)
T ss_pred EEEECCCHHHHHHHHCC--CCCCEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE-EEECCHHHHHHHHHHHHHHC
T ss_conf 99981899999999706--9937585889999855989899999999980899858999-87588999999999998735
Q ss_pred CEEEE-EECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 50899-7246046777765302355310466641477768876-520121048876544542110244311134103445
Q gi|254780453|r 91 VAMLT-VHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR-ESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRM 168 (238)
Q Consensus 91 ~d~iT-vH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~-~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ 168 (238)
.+.+. |-+..+.++++....+ .+.++. +|..-|..+.-+. ..|. ..+. -+..+-.+.|.||+ ..++.
T Consensus 80 ~nvvVKIP~t~~Gl~ai~~L~~-~Gi~vn-~Tavys~~Qa~~Aa~aGA-~yvs----PyvgR~~d~g~Dg~----~~i~~ 148 (220)
T PRK12653 80 ADIVVKVPVTAEGLAAIKMLKA-EGIPTL-GTAVYGAAQGLLSALAGA-EYVA----PYVNRIDAQGGSGI----QTVTD 148 (220)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCCHHHHHHHHHCCC-CEEE----EEEEEHHHCCCCHH----HHHHH
T ss_conf 7808994885789999999988-298778-521067999999998599-8884----44250643389826----68999
Q ss_pred HHHHH---CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC----CCCHHHHHHHHHHHH
Q ss_conf 54420---2440355101135786579840036989999659989999853308----888899999999986
Q gi|254780453|r 169 VREIV---GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR----AADPVSAAQEFQRAI 234 (238)
Q Consensus 169 ir~~~---~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~----a~dP~~aa~~i~~~i 234 (238)
+++.+ +.+..++.--+|-. ....++...|||++-|+=.+.+ .+--.++.+.|.+.=
T Consensus 149 i~~~~~~~~~~tkILaASiR~~----------~~v~~a~~~Gad~iTip~~v~~~l~~hplT~~~~~~F~~Dw 211 (220)
T PRK12653 149 LHQLLKMHAPQAKVLAASFKTP----------RQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_pred HHHHHHHCCCCCEEEEEECCCH----------HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999997699988999838999----------99999998699999839999999977912799999999999
No 231
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=74.61 E-value=7.2 Score=19.57 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHCC-CCCEEEEC--------HHHHHCCCHHHHHHHHHHCHHH---HHHHH--H----CCHHHHHHHHHH
Q ss_conf 98999999997388-52289986--------8998425589999998515466---78776--4----042467898776
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIG--------YHLSFSGGLELARDLISDGKSV---FLDMK--L----FDIGSSVTAAIE 84 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig--------~~l~~~~G~~~i~~l~k~~~~I---f~D~K--~----~DIpnTv~~~v~ 84 (238)
..++.+.++..+.. -+..++++ ..+....--+-++.+++.-+++ ++-+= + +--.+.|...++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~EdPwerlr~lr~~~pnt~lqmLlRg~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89999999999997298789835881099999874879899999999857897343001123320114588289999999
Q ss_pred HHCCCCCEEEEE-ECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 521567508997-2460--467777653023553104666414777688765201210488765445421102443111-
Q gi|254780453|r 85 HIANMGVAMLTV-HAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV- 160 (238)
Q Consensus 85 ~~~~~g~d~iTv-H~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV- 160 (238)
.+.+.|+|.+-+ ++.. ..++.+++..++.+....+....|. +.. ...+....+++...++|++.+-
T Consensus 113 ~~~~~GidvfriFD~LNd~~n~~~ai~~vk~~G~~~~~~i~yt~-sp~---------ht~~yy~~~ak~l~~~Gad~I~i 182 (468)
T PRK12581 113 LSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT-SPV---------HTLNYYLSLVKELVEMGADSICI 182 (468)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECC-CCC---------CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99975998799731467678999999999963874899999668-975---------54999999999999739998998
Q ss_pred ------CCCHHH----HHHHHHHCCCCEEEEECCCC--CCCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf ------341034----45544202440355101135--786579840036989999659989999
Q gi|254780453|r 161 ------CSPQEV----RMVREIVGHNMVIVTPGIRM--LGSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 161 ------~s~~ei----~~ir~~~~~~~~~itPGI~~--~~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
++|... +.+|+. |++-. ...++ .+--++|--+|+++|+|++=+
T Consensus 183 KDmaGlL~P~~a~~LV~~lK~~---------~~iPI~~HtH~t-~Gla~a~~laAieAGaDiVD~ 237 (468)
T PRK12581 183 KDMAGILTPKAAKELVSGIKAM---------TNLPLIVHTHAT-SGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred ECCCCCCCHHHHHHHHHHHHHC---------CCCCEEEEECCC-CCHHHHHHHHHHHCCCCEEEE
T ss_conf 4787776889999999999836---------798659982588-754999999999819999974
No 232
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.33 E-value=5.4 Score=20.37 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 421102443111---34103445544202440-3551011357865798400369899996599899998533088
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
..|.+.|++.+- .||.+++..-+...+.. +-.+.||.++ +..+.-..|.|||.+|.-...+
T Consensus 213 ~~al~~g~d~ImLDNms~~~~~~av~~~~~~~~lEaSGgI~~~-----------ni~~yA~tGVD~IS~GaLThsa 277 (288)
T PRK06978 213 ETALAHGAQSVLLDNFTLDMMREAVRVTAGRAVLEVSGGVNFD-----------TVRAFAETGVDRISIGALTKDV 277 (288)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEECCHHHCCC
T ss_conf 9998489999995799999999999964796799998999999-----------9999996699999888543699
No 233
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.14 E-value=7.3 Score=19.49 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=68.4
Q ss_pred HHHCCHHHHHHH---HHHHHCCCCCEEEEEECCCHH-HH--------------------------HHHHHHCC-CCC-CE
Q ss_conf 764042467898---776521567508997246046-77--------------------------77653023-553-10
Q gi|254780453|r 70 MKLFDIGSSVTA---AIEHIANMGVAMLTVHAYPQT-MR--------------------------SAVSVVRD-TGI-CL 117 (238)
Q Consensus 70 ~K~~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~~-l~--------------------------~~~~~~~~-~~~-~i 117 (238)
+-..||..++.. +.+.+.+.|+|.|-+|+.-|. +. +.+++.++ .+. ..
T Consensus 134 mt~eeI~~ii~~f~~AA~rA~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlENR~Rf~~Eii~aVr~~vg~df~ 213 (361)
T cd04747 134 MTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFP 213 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999999999983999899510446589983587438898878998798473699999999997299875
Q ss_pred EEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCEEEEECC
Q ss_conf 46664147776887652012104887654454211024431113410-------------34455442024403551011
Q gi|254780453|r 118 LAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMVIVTPGI 184 (238)
Q Consensus 118 l~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~~itPGI 184 (238)
++|- ++.+...+... ....+.++. ..++..-.++|+|-+-+|.. -...+|+..+ ...+...++
T Consensus 214 vg~R-is~~~~~~~~~-~~~~~~ee~-~~~~~~l~~~GvD~i~~s~~~~~~p~~~~~~~~~~~~~k~~~~-~p~~~~g~~ 289 (361)
T cd04747 214 IILR-FSQWKQQDYTA-RLADTPDEL-EALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG-LPTITVGSV 289 (361)
T ss_pred EEEE-ECCCCCCCCCC-CCCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEECCC
T ss_conf 9999-67765767665-567999999-9999999977999898413445676567774448899888628-975864441
Q ss_pred CCCC--------CCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHH
Q ss_conf 3578--------6579840036989999659-989999853308888899999
Q gi|254780453|r 185 RMLG--------SATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 185 ~~~~--------~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~ 228 (238)
+... .......+..+..+++..| +|++-+||+.....|-.+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~llaDP~~v~K~~ 342 (361)
T cd04747 290 GLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVR 342 (361)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 03567777751245447779999999998699413897599997544999998
No 234
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=73.69 E-value=7.5 Score=19.42 Aligned_cols=131 Identities=20% Similarity=0.277 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 78987765215675089972460467777653023553104666414777688765201210488765445421102443
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMG 157 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~ 157 (238)
--+.+++.+.+.|.-++-+.-.++.|+++.+..++..+.+++- .++.+..++++|.+.++-
T Consensus 147 kfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqkPllYaA-------------------te~n~~e~~klav~y~vp 207 (467)
T COG1456 147 KFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAA-------------------TEDNWKEFAKLAVEYKVP 207 (467)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEC-------------------CCCCHHHHHHHHHHCCCC
T ss_conf 9999999998658967999579999999998761268525433-------------------201399999988444875
Q ss_pred CCCCCCHHHHHHHHHH------CCCCEEEEECCCCCCCCCCCC--CEECCHHHHHHCCCC---EEEECCHHC----CCCC
Q ss_conf 1113410344554420------244035510113578657984--003698999965998---999985330----8888
Q gi|254780453|r 158 GIVCSPQEVRMVREIV------GHNMVIVTPGIRMLGSATDGQ--KRFATPETALKYGAS---HIVVSRPIV----RAAD 222 (238)
Q Consensus 158 GvV~s~~ei~~ir~~~------~~~~~~itPGI~~~~~~~~dq--~r~~tp~~Ai~~GaD---~iVVGR~I~----~a~d 222 (238)
=++.+++++..++... |-.=+.+-||--+-|.+..|- .-++--+.||..+-+ |=|++-|++ .-.|
T Consensus 208 lvl~a~~dl~~lk~la~~~~~~Gi~divLdPgT~p~~egl~~T~d~~v~iRr~aIe~~d~~~~yPim~~p~~~~~~~~dd 287 (467)
T COG1456 208 LVLSAFNDLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVMIRRAAIEGFDKDFAYPIMALPFTAWMFGEDD 287 (467)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCC
T ss_conf 79855677899999999999739752776688656865366888889999998761567533550440532455522675
Q ss_pred HHHHH
Q ss_conf 89999
Q gi|254780453|r 223 PVSAA 227 (238)
Q Consensus 223 P~~aa 227 (238)
|..+.
T Consensus 288 ~V~a~ 292 (467)
T COG1456 288 PVSAS 292 (467)
T ss_pred HHHHH
T ss_conf 37788
No 235
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=73.15 E-value=7.8 Score=19.34 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCCEEEEE
Q ss_conf 98776521567508997
Q gi|254780453|r 80 TAAIEHIANMGVAMLTV 96 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTv 96 (238)
...++.+..+++++++|
T Consensus 42 ~~~i~~L~~l~P~FvSV 58 (296)
T PRK09432 42 WNSIDRLSSLKPKFVSV 58 (296)
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99999985169998996
No 236
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=73.14 E-value=7.8 Score=19.34 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99999851546678776404246789877652156750899724
Q gi|254780453|r 55 LARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 55 ~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
.++.+++.+.++| +++++ +.. .+.+.++|+|.+.+.+
T Consensus 101 ~~~~~~~~g~~v~-----~~v~s-~~~-A~~a~~~G~D~iV~qG 137 (307)
T TIGR03151 101 YIPRLKENGVKVI-----PVVAS-VAL-AKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHCCCEEE-----EEECC-HHH-HHHHHHCCCCEEEEEC
T ss_conf 9999998599799-----98189-999-9999964999999745
No 237
>PRK04759 consensus
Probab=73.01 E-value=4.8 Score=20.66 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=52.3
Q ss_pred EEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHC----CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 998689984255899999985154667877640----4246789877652156750899724604677776530235531
Q gi|254780453|r 41 YKIGYHLSFSGGLELARDLISDGKSVFLDMKLF----DIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGIC 116 (238)
Q Consensus 41 iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~----DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~ 116 (238)
.|.+.+-....-.+++++|.+++..+++|-.++ |.|+.-......+.+ .+|++.+-+..|++-.+.+.....++-
T Consensus 12 ~k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~~~l~~-~~Dlvi~lGGDGTlL~aar~~~~~~~P 90 (294)
T PRK04759 12 GKPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASLVELGK-KADLAIVVGGDGNMLGAARVLSRFDIS 90 (294)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCHHHCCC-CCCEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 4179979999999999999868999999168865533477222377556376-656899984785899999986016996
Q ss_pred EEEEE-----EECCCCHHHHH
Q ss_conf 04666-----41477768876
Q gi|254780453|r 117 LLAVT-----VLTSMDDFDLR 132 (238)
Q Consensus 117 il~Vt-----~LTS~~~~~l~ 132 (238)
++||- -||..+.+++.
T Consensus 91 ilgiN~G~lGFLt~~~~~~~~ 111 (294)
T PRK04759 91 VIGVNRGNLGFLTDLNPEDFQ 111 (294)
T ss_pred EEEEECCCEEEECCCCHHHHH
T ss_conf 898845864674146888999
No 238
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=72.69 E-value=7.9 Score=19.27 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCC
Q ss_conf 421102443111---34103445544202440-355101135786579840036989999659989999853308888
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~d 222 (238)
..|.++|++-+. .||.+++..-+...... +-.+.||.+. +..+.-+.|.|||=||. +|.|..
T Consensus 222 ~eal~~gaDiIlLDN~s~~~~k~av~~~~~~~~lEaSGgI~l~-----------ni~~yA~tGVD~IS~Ga-LThs~~ 287 (296)
T PRK09016 222 DQALKAGADIIMLDNFTTEQMREAVKRTNGKAALEVSGNVTLE-----------TLREFAETGVDFISVGA-LTKHVQ 287 (296)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHH-----------HHHHHHHCCCCEEECCH-HHCCCC
T ss_conf 9999659999998898999999999974796799987899899-----------99999972999998887-666997
No 239
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=72.64 E-value=8 Score=19.26 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCCCE-EEEEEECCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 777765302355310-46664147776887652012--104887654454211024431113
Q gi|254780453|r 103 MRSAVSVVRDTGICL-LAVTVLTSMDDFDLRESGYE--KDISDMVRMRAVQARDIGMGGIVC 161 (238)
Q Consensus 103 l~~~~~~~~~~~~~i-l~Vt~LTS~~~~~l~~~g~~--~~~~~~v~~~a~~a~~~g~~GvV~ 161 (238)
.+..++.+++.+.-+ +||- --|++..-++..|.. ..+-+.+.+.+.++.+.|++-+|.
T Consensus 118 ~~~vv~~ak~~~ipIRIGvN-~GSL~~~ll~kyg~~~~~amveSAl~~~~~~e~~~f~~ivi 178 (367)
T PRK00366 118 FKEVVEAAKDYGIPIRIGVN-AGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKI 178 (367)
T ss_pred HHHHHHHHHHCCCCEEECCC-CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999984997664467-78767999987089867999999999999999789855999
No 240
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=72.04 E-value=5.6 Score=20.25 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.5
Q ss_pred HHHHCCCCEEEECCHH
Q ss_conf 9996599899998533
Q gi|254780453|r 202 TALKYGASHIVVSRPI 217 (238)
Q Consensus 202 ~Ai~~GaD~iVVGR~I 217 (238)
.|+..|||++-+||+-
T Consensus 302 kalaLGAD~v~~a~~~ 317 (392)
T cd02808 302 KALALGADAVGIGTAA 317 (392)
T ss_pred HHHHHCCCHHHHCHHH
T ss_conf 9998675645105699
No 241
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.55 E-value=8.4 Score=19.11 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCC------CCC---CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH
Q ss_conf 8765445421102443------111---341034455442024403551011357865798400369899996
Q gi|254780453|r 142 DMVRMRAVQARDIGMG------GIV---CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK 205 (238)
Q Consensus 142 ~~v~~~a~~a~~~g~~------GvV---~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~ 205 (238)
+.+.+-..++.++|.| |+. +++..+..+++.+.+...--.-||.+.|+ +-|+++|..
T Consensus 148 e~I~~As~~a~~aGADFVKTSTGk~~~gAT~e~v~~M~~aI~~~~~G~~vGvKasGG-------Irt~~dA~~ 213 (258)
T PRK05283 148 ALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVGKTVGFKPAGG-------VRTAEDAAQ 213 (258)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC-------CCCHHHHHH
T ss_conf 999999999999697988889998999979999999999999864588656762588-------689999999
No 242
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=71.42 E-value=7.2 Score=19.55 Aligned_cols=151 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHCHHH--HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHHHHC--CCCCCEEEEEEE
Q ss_conf 25589999998515466--78776404246789877652156750899724604--6777765302--355310466641
Q gi|254780453|r 50 SGGLELARDLISDGKSV--FLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQ--TMRSAVSVVR--DTGICLLAVTVL 123 (238)
Q Consensus 50 ~~G~~~i~~l~k~~~~I--f~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~--~l~~~~~~~~--~~~~~il~Vt~L 123 (238)
.+|..-+.|+.++-..+ +-|.++|=||+-=.+-++.+..+ +| .||+..- -.+...+.+. .....+|.-.-+
T Consensus 51 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~--~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~ 127 (224)
T cd06824 51 HFGENYVQEALEKIEALRDLQDIEWHFIGPIQSNKTKLIAEN-FD--WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI 127 (224)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-HH--HHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 247870999999999853378955999775520167999985-21--897645099999999999972998628999853
Q ss_pred CCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCC-CCH--HHH-------HHHHHH---CC---CCEEEEECCCC
Q ss_conf 47776887652012-104887654454211024431113-410--344-------554420---24---40355101135
Q gi|254780453|r 124 TSMDDFDLRESGYE-KDISDMVRMRAVQARDIGMGGIVC-SPQ--EVR-------MVREIV---GH---NMVIVTPGIRM 186 (238)
Q Consensus 124 TS~~~~~l~~~g~~-~~~~~~v~~~a~~a~~~g~~GvV~-s~~--ei~-------~ir~~~---~~---~~~~itPGI~~ 186 (238)
| .+ -+..|+. ..+.+.+..... .....+.|+-| +|. +.. .+|+.. .. ++-.++=|-
T Consensus 128 -s--~E-~~K~G~~~~e~~~~~~~i~~-~~~l~i~GLMti~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMGM-- 200 (224)
T cd06824 128 -S--GE-DSKSGVAPEDAAELAEAISQ-LPNLRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGM-- 200 (224)
T ss_pred -C--CC-CCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC--
T ss_conf -7--85-00269899999999999995-69984266776579998857899999999999999985179989577705--
Q ss_pred CCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 7865798400369899996599899998533088
Q gi|254780453|r 187 LGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 187 ~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
.+| -+.|++.||+.+=||++|..|
T Consensus 201 ----S~D------ye~AI~~GsT~VRIGsaIFGa 224 (224)
T cd06824 201 ----SGD------LEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred ----HHH------HHHHHHCCCCEEEECCHHHCC
T ss_conf ----454------999998799979818364196
No 243
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP). UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=71.33 E-value=5.4 Score=20.35 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=15.3
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 43111341034455442024403551011
Q gi|254780453|r 156 MGGIVCSPQEVRMVREIVGHNMVIVTPGI 184 (238)
Q Consensus 156 ~~GvV~s~~ei~~ir~~~~~~~~~itPGI 184 (238)
+-.+|++|+=++++++.. +|--++|-.|
T Consensus 161 ~~~~vAAPeG~~~v~~~h-pdV~iytA~i 188 (213)
T TIGR01091 161 VLSIVAAPEGIEAVQKAH-PDVDIYTAAI 188 (213)
T ss_pred EEEEEECHHHHHHHHHHC-CCCEEEEEEE
T ss_conf 999982557899999846-9946999973
No 244
>PRK02747 consensus
Probab=70.76 E-value=8.8 Score=18.99 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=72.8
Q ss_pred CHHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEEC-C----CCHHHHHHHHCCC
Q ss_conf 42467898------776521567508997246----0467777653023553104666414-7----7768876520121
Q gi|254780453|r 74 DIGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLT-S----MDDFDLRESGYEK 138 (238)
Q Consensus 74 DIpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LT-S----~~~~~l~~~g~~~ 138 (238)
.+|=|+.+ .++.+.+.|+|-+.+-.. |.-++++.+...... -++++-.-. + .+.+.+...+...
T Consensus 74 ~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~l~~~~~~~fG~q~-Iv~siD~k~~~~~~~~~~~~i~~~~~~~ 152 (257)
T PRK02747 74 FMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVARPEFVAEAADKFGSQC-IVVAIDAKRVSPAGENDRWEIFTHGGRK 152 (257)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEE-EEEEEEEEECCCCCCCCCEEEEECCCCE
T ss_conf 998898488207388789987699689834446548347777887559657-9999987751576778738999889846
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC---------CCHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHC
Q ss_conf 04887654454211024431113---------41034---4554420244035510113578657984003698999965
Q gi|254780453|r 139 DISDMVRMRAVQARDIGMGGIVC---------SPQEV---RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKY 206 (238)
Q Consensus 139 ~~~~~v~~~a~~a~~~g~~GvV~---------s~~ei---~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~ 206 (238)
...-....++....+.|+..+++ .+-++ +.+++.+ +-.++.+.|++-..+ -.++++.
T Consensus 153 ~t~~~~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~~~-~~pvIasGGv~~~~d----------i~~~~~~ 221 (257)
T PRK02747 153 PTGIDAVEFAQKVVSLGAGEILLTSMDRDGTKAGFDLPLTRAIADAV-RVPVIASGGVGTLDH----------LVEGVRD 221 (257)
T ss_pred ECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCHHH----------HHHHHHH
T ss_conf 34303999999999709988999988355732678869999998607-998999779999999----------9999983
Q ss_pred -CCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf -998999985330888889999999998
Q gi|254780453|r 207 -GASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 207 -GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
+++-+++|+..+..+.-...|+++.+.
T Consensus 222 ~~~~av~~g~~~~~~~~~l~~ak~~L~~ 249 (257)
T PRK02747 222 GHATAVLAASIFHFGTYTIGEAKAHMAA 249 (257)
T ss_pred CCCCEEEEHHHHHCCCCCHHHHHHHHHH
T ss_conf 8984998832677699899999999998
No 245
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=69.31 E-value=4 Score=21.24 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=91.2
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHH--------------------------CCCHH-HHHHHH
Q ss_conf 115789889996079989999999973885228998689984--------------------------25589-999998
Q gi|254780453|r 8 DVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSF--------------------------SGGLE-LARDLI 60 (238)
Q Consensus 8 ~~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~--------------------------~~G~~-~i~~l~ 60 (238)
-++=+++|-+|-=++.--++++.+..++ ..++++|+.... +.|.+ +.++|+
T Consensus 45 Gl~f~nPiGlAAGfDKn~~~~~~~~~lG--fGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~ 122 (327)
T cd04738 45 GLTFPNPVGLAAGFDKNAEAIDALLALG--FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLK 122 (327)
T ss_pred CEECCCCCEECCCCCCCHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHH
T ss_conf 7556995865458898858999999669--86799714368888899998579746754011004587176999999998
Q ss_pred HHC---HHHHHH-HHHCCHH--HHHHHH---HHHHCCCCCEEEEEECCC------------HHHHHHHHHHCC----C--
Q ss_conf 515---466787-7640424--678987---765215675089972460------------467777653023----5--
Q gi|254780453|r 61 SDG---KSVFLD-MKLFDIG--SSVTAA---IEHIANMGVAMLTVHAYP------------QTMRSAVSVVRD----T-- 113 (238)
Q Consensus 61 k~~---~~If~D-~K~~DIp--nTv~~~---v~~~~~~g~d~iTvH~~~------------~~l~~~~~~~~~----~-- 113 (238)
+.. .+++.- .|..+.+ +.+..+ ++.++.+ +||+++..++ +.+....+..+. .
T Consensus 123 ~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~~~ 201 (327)
T cd04738 123 KRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 40456871799985047882676899999999985355-77899954688984510026889999999999999985377
Q ss_pred CCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-----------------------------
Q ss_conf 531046664147776887652012104887654454211024431113410-----------------------------
Q gi|254780453|r 114 GICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ----------------------------- 164 (238)
Q Consensus 114 ~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~----------------------------- 164 (238)
..=++. -| |.|- -++.....+..+.+.|++|+|+.-.
T Consensus 202 ~~Pi~v--Kl-sPD~-----------~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~ 267 (327)
T cd04738 202 KVPLLV--KI-APDL-----------SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERST 267 (327)
T ss_pred CCCEEE--EE-CCCC-----------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 886699--81-7997-----------667899999999973997899958855542124565556668636406789999
Q ss_pred -HHHHHHHHHCCCCEEE-EECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEECCH-HCCCCCHHHHHHHHHHH
Q ss_conf -3445544202440355-101135786579840036989---999659989999853-30888889999999998
Q gi|254780453|r 165 -EVRMVREIVGHNMVIV-TPGIRMLGSATDGQKRFATPE---TALKYGASHIVVSRP-IVRAADPVSAAQEFQRA 233 (238)
Q Consensus 165 -ei~~ir~~~~~~~~~i-tPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVVGR~-I~~a~dP~~aa~~i~~~ 233 (238)
-++.+++..+.++-++ +.|| +|++ +-+.+|||.+=|+-+ ||+-.. ..++|.++
T Consensus 268 ~~v~~v~~~~~~~~pIIgvGGI-------------~s~~Da~e~i~aGAslVQiyT~liy~GP~---li~~I~~~ 326 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGI-------------SSGEDAYEKIRAGASLVQLYTGLVYEGPG---LVKRIKRE 326 (327)
T ss_pred HHHHHHHHHCCCCCCEEEECCC-------------CCHHHHHHHHHCCCCHHHHHHHHHHCCCH---HHHHHHHH
T ss_conf 9999999974999819998897-------------99999999998699699876898931906---99999821
No 246
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=68.91 E-value=9.6 Score=18.74 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=69.0
Q ss_pred HHHHHHHHHC--CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH---HHCCC
Q ss_conf 4667877640--424678987765215675089972460467777653023553104666414777688765---20121
Q gi|254780453|r 64 KSVFLDMKLF--DIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRE---SGYEK 138 (238)
Q Consensus 64 ~~If~D~K~~--DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~---~g~~~ 138 (238)
..++.|+=|+ -.++.+....+.+.+.|+|++-+-+..+.. ..++...+.++-+.|=.=||..+-..+.. .|-+.
T Consensus 74 a~iv~DmPf~sy~~~~~a~~na~~l~~~Ga~aVKlEgg~~~~-~~i~~L~~~gIpV~gHiGltPQ~~~~~gg~k~qGk~~ 152 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGEWHI-ETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred CEEEEECCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH-HHHHHHHHCCCCEEEEECCCCCEEECCCCCEEECCCH
T ss_conf 539983634423899999999999998599989979875089-9999999879947976358860011047722432768
Q ss_pred CHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEC
Q ss_conf 0488765445421102443111--34103445544202440355101135786579840036
Q gi|254780453|r 139 DISDMVRMRAVQARDIGMGGIV--CSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFA 198 (238)
Q Consensus 139 ~~~~~v~~~a~~a~~~g~~GvV--~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~ 198 (238)
.-.+.+.+.+..-.++|+..+| |-|.++. +++ .+..-+-|=||+. |...|.|-.+.
T Consensus 153 ~~a~~l~~dA~ale~AGa~~ivlE~vp~~la--~~I-t~~~~IPtIGIGA-G~~cDGQvLV~ 210 (240)
T cd06556 153 EAGEQLIADALAYAPAGADLIVMECVPVELA--KQI-TEALAIPLAGIGA-GSGTDGQFLVL 210 (240)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHH--HHH-HHCCCCCEEEECC-CCCCCEEEEEH
T ss_conf 9999999999999847984998745849999--999-9569998997277-89986677726
No 247
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.76 E-value=8.3 Score=19.15 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=38.0
Q ss_pred HHHHHCCCCCCC---CCCHHHHHHHHHHC---CC-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 421102443111---34103445544202---44-03551011357865798400369899996599899998533088
Q gi|254780453|r 149 VQARDIGMGGIV---CSPQEVRMVREIVG---HN-MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 149 ~~a~~~g~~GvV---~s~~ei~~ir~~~~---~~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
..|.++|+|-+- .||.+++..-+... +. .+-.+.||.+++ ..+.-+.|.|||.+|.--..+
T Consensus 212 ~ea~~~gaDiImLDNms~e~~~~av~~~~~~~~~v~lEaSGgI~~~n-----------i~~yA~tGVD~IS~G~LThs~ 279 (288)
T PRK07896 212 DEVLAEGAELILLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDT-----------AAAYAATGVDYLAVGALTHSV 279 (288)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEECCHHHCCC
T ss_conf 99874699999977999999999999983769874899988999999-----------999996599999878532699
No 248
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=68.32 E-value=9.9 Score=18.66 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCCCEEE--EE-ECCC---HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 78987765215675089--97-2460---467777653023553104666414777688765201210488765445421
Q gi|254780453|r 78 SVTAAIEHIANMGVAML--TV-HAYP---QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~i--Tv-H~~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
++...++.+.++|+..+ || -+++ +|+++..+...+-...=+.+.+.+=.-+..+..-+.....-+.+---+.+|
T Consensus 147 ~~~~sV~dA~rLGa~AVG~TIY~GS~~~~~mi~E~~~i~~eAh~~GL~tVlW~YpRG~a~kkegD~etA~Dl~ayAAhlA 226 (348)
T PRK09250 147 ALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLA 226 (348)
T ss_pred CCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 40046999985476465427846975479999999999999997698089997247854455788115788888999999
Q ss_pred HHCCCCCCC---------------------------CCCHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCCEECC
Q ss_conf 102443111---------------------------3410344554420-----24403551011357865798400369
Q gi|254780453|r 152 RDIGMGGIV---------------------------CSPQEVRMVREIV-----GHNMVIVTPGIRMLGSATDGQKRFAT 199 (238)
Q Consensus 152 ~~~g~~GvV---------------------------~s~~ei~~ir~~~-----~~~~~~itPGI~~~~~~~~dq~r~~t 199 (238)
...|.+ +| .+.+-+.++|..+ |...++++.|=. .++..-...
T Consensus 227 a~LGAd-IIKVK~Pt~~~~~~a~~~~~~~~kvY~~l~~~~~~drvr~~V~s~f~GR~~VI~SGG~s-----kg~~dll~~ 300 (348)
T PRK09250 227 ATIGAD-IIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGAA-----KGEDDLLDA 300 (348)
T ss_pred HHHCCC-EEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-----CCHHHHHHH
T ss_conf 985588-79830776655552212232203555431446789999999988745874799789987-----887999999
Q ss_pred HHHHH---HCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999---659989999853308888899999999986651
Q gi|254780453|r 200 PETAL---KYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 200 p~~Ai---~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
.++++ +.|..-.|+||-+-+ -|.+.+-++.+.|..|
T Consensus 301 vr~~v~~k~aGg~G~IiGRN~FQ--Rp~~Eal~Ll~~I~dI 339 (348)
T PRK09250 301 VRTAVINKRAGGMGLIIGRKAFQ--RPMAEGVKLLNAIQDI 339 (348)
T ss_pred HHHHHHCCCCCCEEEEECCHHCC--CCHHHHHHHHHHHHHH
T ss_conf 99998446677401343221015--8789999999999999
No 249
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=67.96 E-value=10 Score=18.62 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCCCCCCCEECCHHHHHH-------CCCCEEEECCHH
Q ss_conf 865798400369899996-------599899998533
Q gi|254780453|r 188 GSATDGQKRFATPETALK-------YGASHIVVSRPI 217 (238)
Q Consensus 188 ~~~~~dq~r~~tp~~Ai~-------~GaD~iVVGR~I 217 (238)
|+...=|..+.+.++|++ .|||++.|=-+.
T Consensus 215 gdrktYQmd~~n~~eAl~e~~~D~~EGAD~lMVKP~~ 251 (322)
T pfam00490 215 GDRKTYQMDPANRREALREVALDIEEGADMVMVKPAL 251 (322)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 8803011699877999999985576099869862641
No 250
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=67.70 E-value=10 Score=18.58 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCCCCCCCCC---HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 2443111341---034455442024403551011357865798400369899996599899998
Q gi|254780453|r 154 IGMGGIVCSP---QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 154 ~g~~GvV~s~---~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
-++.|+=-|. ..+..+++..++++.+++. . + . ..-.++..|++-.+.|
T Consensus 156 ~~vvgiK~s~~d~~~~~~~~~~~~~~~~v~~G-~-----d---~----~~~~~~~~Ga~G~i~~ 206 (288)
T cd00954 156 PNVIGVKFTATDLYDLERIRAASPEDKLVLNG-F-----D---E----MLLSALALGADGAIGS 206 (288)
T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCEEECC-C-----H---H----HHHHHHHCCCCEEEEC
T ss_conf 89789997879999999999976998246169-5-----7---9----9999998699899957
No 251
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=67.03 E-value=10 Score=18.50 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHCC-CCEEEECCHHCCCCCHHHHHHH
Q ss_conf 89999659-9899998533088888999999
Q gi|254780453|r 200 PETALKYG-ASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 200 p~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.++++..| +|.+=+||+.....|-.+.+++
T Consensus 306 Ae~~l~~G~aDlV~~gR~llADPd~~~K~~~ 336 (362)
T PRK10605 306 AETLIGKGLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred HHHHHHCCCCCEEEEHHHHHHCCCHHHHHHC
T ss_conf 9999988998798100687759458999857
No 252
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=66.96 E-value=11 Score=18.49 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCCCCCC-CCC--HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCH---------HC---
Q ss_conf 2443111-341--03445544202440355101135786579840036989999659989999853---------30---
Q gi|254780453|r 154 IGMGGIV-CSP--QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRP---------IV--- 218 (238)
Q Consensus 154 ~g~~GvV-~s~--~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~---------I~--- 218 (238)
-++.|+= +|+ .....+++..++++.++++ - + . ..-.++..|++-.|-|=+ ++
T Consensus 155 ~~i~giK~ss~~~~~~~~~~~~~~~~~~v~~G-~-----d---~----~~~~~l~~Ga~G~i~~~~n~~P~~~~~i~~~~ 221 (289)
T pfam00701 155 PNVVGVKDAVGDLERMENIRKRAGPDFTILSG-D-----D---E----TALSYLSLGADGVISVTSNIAPKLMRDIYRAL 221 (289)
T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCEEECC-C-----H---H----HHHHHHHCCCCEEEEEHHHHCHHHHHHHHHHH
T ss_conf 99899996998999999999966998245069-4-----8---9----99999866898799841540599999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 88888999999999866
Q gi|254780453|r 219 RAADPVSAAQEFQRAIS 235 (238)
Q Consensus 219 ~a~dP~~aa~~i~~~i~ 235 (238)
+++| .+.|+++++.+.
T Consensus 222 ~~gd-~~~A~~l~~~l~ 237 (289)
T pfam00701 222 KNGD-FATAALLNEKLL 237 (289)
T ss_pred HCCC-HHHHHHHHHHHH
T ss_conf 8779-999999999999
No 253
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=66.86 E-value=11 Score=18.48 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHHHC
Q ss_conf 998999999997388-522899868998425589999998515
Q gi|254780453|r 22 PTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLISDG 63 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k~~ 63 (238)
.+.++-+++++.|.. -+..+++|+|.-...-.++++.+.+.+
T Consensus 24 ~s~~eKl~ia~~L~~lGv~~IEvGfPaas~~D~e~~~~i~~~~ 66 (530)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELK 66 (530)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999999999999985999999346667863899999998635
No 254
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.79 E-value=4.7 Score=20.77 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=52.0
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHH-HHHH--HHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 8998689984255899999985154667877640424-6789--877652156750899724604677776530235531
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIG-SSVT--AAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGIC 116 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIp-nTv~--~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~ 116 (238)
+.|.+.+-....-.+++++|.+++..+++|-..++.- .... .....+. ..+|++.+-+..|++-.+.+.....++-
T Consensus 10 v~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~-~~~Dlii~lGGDGT~L~~~~~~~~~~~P 88 (296)
T PRK01231 10 IGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGSLLGAARALARHNVP 88 (296)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCC-CCEEEEEEECCCCHHHHHHHHHCCCCCC
T ss_conf 984898799999999999998788999993247766587886624533416-5304999957872899999996036997
Q ss_pred EEEEE-----EECCCCHHHHH
Q ss_conf 04666-----41477768876
Q gi|254780453|r 117 LLAVT-----VLTSMDDFDLR 132 (238)
Q Consensus 117 il~Vt-----~LTS~~~~~l~ 132 (238)
++|+- -||..+.+++.
T Consensus 89 ilGiN~G~lGFL~~~~~~~~~ 109 (296)
T PRK01231 89 VLGINRGRLGFLTDIRPDELE 109 (296)
T ss_pred EEEEECCCCEEECCCCHHHHH
T ss_conf 898855870063456889999
No 255
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=66.73 E-value=11 Score=18.46 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=13.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHCC-CCCEEEECHHHHH
Q ss_conf 88999607998999999997388-5228998689984
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSD-TVSFYKIGYHLSF 49 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~-~i~~iKig~~l~~ 49 (238)
++++..-..+..+++++++.... -++++=+-.|+|.
T Consensus 72 pvi~gv~~~~t~~~i~~a~~A~~~Gadav~v~~P~y~ 108 (292)
T PRK03170 72 PVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 2884378767999999999898759998996177688
No 256
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.48 E-value=9.7 Score=18.72 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHCCCCCCCC---CCHHHHHHHHHH---CCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 4211024431113---410344554420---2440-3551011357865798400369899996599899998533088
Q gi|254780453|r 149 VQARDIGMGGIVC---SPQEVRMVREIV---GHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 149 ~~a~~~g~~GvV~---s~~ei~~ir~~~---~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
..|.++|+|.+-+ ||.+++.+-+.+ .++. +-.+.||.+++ ..+.-+.|.|++++|- +|.+
T Consensus 203 ~ea~~~gaD~IlLDnmsp~~l~~av~~~~~~~~~~~lEaSGGI~~~n-----------i~~yA~tGVD~i~tsa-~~~a 269 (284)
T PRK06096 203 IAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLALTGGINLTT-----------LKNYLDCGIRLFITSA-PYYA 269 (284)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-----------HHHHHHCCCCEEEECC-CCCC
T ss_conf 99985799999968989999999999987217977999989999999-----------9999980999998282-1067
No 257
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=65.82 E-value=11 Score=18.35 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf 69899996599899998533088888999999999
Q gi|254780453|r 198 ATPETALKYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 198 ~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
.|.--|+..||.-+=||.+|.+-.|.......+++
T Consensus 198 vT~PmAiaaGAsGVGVGSavn~Lnd~~aMva~vr~ 232 (243)
T pfam04481 198 VTVPLAFSYGASGIGIGSAVSKLNDIEKMVNYISE 232 (243)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 14788997487710065776500249999999999
No 258
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=65.66 E-value=11 Score=18.33 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHCC-CCCEEEEC----HHH---HHCCC-HHHHHHHHHHCHHH---HHHHHHCCH------HHHHHHHHH
Q ss_conf 98999999997388-52289986----899---84255-89999998515466---787764042------467898776
Q gi|254780453|r 23 TVKEAERIVSILSD-TVSFYKIG----YHL---SFSGG-LELARDLISDGKSV---FLDMKLFDI------GSSVTAAIE 84 (238)
Q Consensus 23 ~~~e~l~l~~~l~~-~i~~iKig----~~l---~~~~G-~~~i~~l~k~~~~I---f~D~K~~DI------pnTv~~~v~ 84 (238)
+.++.+.++..+.. -+..++++ ++. |...+ -+-++.+++..++. ++-+--.-+ .+.+...++
T Consensus 24 ~~~d~l~IA~~ld~~Gv~siE~~GgAtfd~~~r~l~Edpwerlr~i~~~~~nt~lq~LlRg~n~vGy~~~pddvv~~~v~ 103 (463)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRAIRKAVKNTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (463)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 89999999999986398489847771199999985889899999999867884568987003324311378089999999
Q ss_pred HHCCCCCEEEEEE-CCCH--HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 5215675089972-4604--67777653023553104666414777688765201210488765445421102443111-
Q gi|254780453|r 85 HIANMGVAMLTVH-AYPQ--TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV- 160 (238)
Q Consensus 85 ~~~~~g~d~iTvH-~~~~--~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV- 160 (238)
.+.+.|+|.+.+. +..+ .++.+.+..++.+...-+....|. +.. + + .+...+.++.+.+.|++.+-
T Consensus 104 ~a~~~Gidv~rifd~lndi~nl~~ai~~~k~~G~~~~~~i~yt~-sp~------~--t-~~yyv~~a~~l~~~Gad~I~i 173 (463)
T PRK12331 104 KSIENGIDIIRIFDALNDVRNLQTAVKATKKAGGHAQVAISYTT-SPV------H--T-IDYFVKLAKEMQEIGADSICI 173 (463)
T ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEC-CCC------C--C-HHHHHHHHHHHHHCCCCEEEE
T ss_conf 99985999788740566467789999999970786999999725-886------7--6-999999999999649988998
Q ss_pred ------CCCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf ------34103----4455442024403551011357865798400369899996599899998
Q gi|254780453|r 161 ------CSPQE----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 161 ------~s~~e----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
+.|.. ++.+|+.++ - | |.+...+ +.+--+++--.|+++|||++=+.
T Consensus 174 kD~aGll~P~~~~eLV~aLk~~~~-l-----p-I~~HtH~-t~Gla~an~laAieAGaDivD~a 229 (463)
T PRK12331 174 KDMAGILTPYVAYELVKCIKENVT-V-----P-LEVHTHA-TSGIAEMTYLKAIEAGADIIDTA 229 (463)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC-C-----C-EEEEECC-CCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 678677688999999999997449-8-----5-6998368-87579999999998499999623
No 259
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=65.64 E-value=11 Score=18.33 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=104.4
Q ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCCH----HHHHHHHHH---CHHHHHHHHHCCHHHHHHHHHHHH-CC
Q ss_conf 9960799899999999738852289986899842558----999999851---546678776404246789877652-15
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGL----ELARDLISD---GKSVFLDMKLFDIGSSVTAAIEHI-AN 88 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~----~~i~~l~k~---~~~If~D~K~~DIpnTv~~~v~~~-~~ 88 (238)
+=||+.|+++..++.+. +.++++-.+.-++...|. +.++++.+. ..++++-- +.|-.+.+....+.+ ..
T Consensus 3 lflDtAdl~eI~~~~~~--~~i~GvTTNPsll~k~g~~d~~~~l~~i~~~i~~~~~ls~qv-~~~d~~~mi~~a~~i~~~ 79 (222)
T PRK12656 3 FMLDTLNLEAIKKWHHI--LPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQV-VAQDYEGILKDAAEIRRQ 79 (222)
T ss_pred EEEECCCHHHHHHHHCC--CCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEE-EECCHHHHHHHHHHHHHH
T ss_conf 99981899999999748--990457589999987699888999999999829998889997-639899999999999985
Q ss_pred CCCEEE-EEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 675089-97246046777765302355310466641477768876-5201210488765445421102443111341034
Q gi|254780453|r 89 MGVAML-TVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR-ESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEV 166 (238)
Q Consensus 89 ~g~d~i-TvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~-~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei 166 (238)
++-+.+ -|-.....++++....+ .+.++. +|..-|.++.-+. ..|. . ++--+..+-.+.|.||+ ..+
T Consensus 80 ~~~nv~VKIP~t~~Glkai~~L~~-~gi~vn-~Tavfs~~Qa~~Aa~aGA-~----yvsPf~GRi~d~G~Dg~----~~i 148 (222)
T PRK12656 80 CGDDVYIKVPVTPAGLAAIKTLKA-EGYHIT-ATAIYTTFQGLLAIEAGA-D----YLAPYYNRMENLNIDSE----AVI 148 (222)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHH-CCCCEE-EEEECCHHHHHHHHHCCC-C----EEEECCCCHHHCCCCCH----HHH
T ss_conf 576789966887889999999997-598656-887279999999998699-8----99971464875499928----999
Q ss_pred HHHHHHH---CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC----CCCHHHHHHHHHHHHH
Q ss_conf 4554420---2440355101135786579840036989999659989999853308----8888999999999866
Q gi|254780453|r 167 RMVREIV---GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR----AADPVSAAQEFQRAIS 235 (238)
Q Consensus 167 ~~ir~~~---~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~----a~dP~~aa~~i~~~i~ 235 (238)
+.+++.+ +.+..++.--||-.. ...+|...|+|++-|.-.|.+ .+-..++.+.|.+.=+
T Consensus 149 ~~i~~~~~~~~~~tkIL~ASiR~~~----------~v~~a~~~G~d~iTipp~v~~~l~~hp~T~~~~~~F~~Dw~ 214 (222)
T PRK12656 149 GQLAEAINRENSNSKILAASFKNVA----------QVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFGDDWE 214 (222)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHH----------HHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999855999619865268999----------99999986999998599999999749017999999999999
No 260
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=65.44 E-value=11 Score=18.30 Aligned_cols=141 Identities=19% Similarity=0.175 Sum_probs=70.5
Q ss_pred HCCHHHHHHH---HHHHHCCCCCEEEEEECCCHHH---------------------------HHHHHHHCCC-C-CCEEE
Q ss_conf 4042467898---7765215675089972460467---------------------------7776530235-5-31046
Q gi|254780453|r 72 LFDIGSSVTA---AIEHIANMGVAMLTVHAYPQTM---------------------------RSAVSVVRDT-G-ICLLA 119 (238)
Q Consensus 72 ~~DIpnTv~~---~v~~~~~~g~d~iTvH~~~~~l---------------------------~~~~~~~~~~-~-~~il~ 119 (238)
..||..++.. +.+.+.+.|+|++-+|+.-|.| .+.+++.+.. . -+.+.
T Consensus 548 ~~eI~~vv~~F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~ 627 (770)
T PRK08255 548 RADMDRVRDQFVAATRRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMS 627 (770)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999999999999999998399989995234555887538644677543578888777889999999998678988669
Q ss_pred EEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-----------------HHHHHHHHHCCCCEEEEE
Q ss_conf 664147776887652012104887654454211024431113410-----------------344554420244035510
Q gi|254780453|r 120 VTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ-----------------EVRMVREIVGHNMVIVTP 182 (238)
Q Consensus 120 Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~-----------------ei~~ir~~~~~~~~~itP 182 (238)
|- + +..|+-+.|. +.++.| .+++.-++.|+|-+=||.- -..++|+..+ -..+-+.
T Consensus 628 vR-i---SatDw~~gG~--t~edsv-~la~~l~~~GvD~IdvSsGg~~~~~~p~~g~~yQvpfA~~Ir~e~~-i~t~AVG 699 (770)
T PRK08255 628 VR-I---SAHDWVEGGN--TPDDAV-EIARAFKAAGADMIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAVG 699 (770)
T ss_pred EE-E---ECCCCCCCCC--CHHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEC
T ss_conf 99-8---5102568999--999999-9999999749989995788888667788887656699999998759-9789961
Q ss_pred CCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCC-HHHHHHHH
Q ss_conf 1135786579840036989999659-989999853308888-89999999
Q gi|254780453|r 183 GIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAAD-PVSAAQEF 230 (238)
Q Consensus 183 GI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~d-P~~aa~~i 230 (238)
.|.-+ + ..++.+..| ||.+-+||+.....+ |..+|.++
T Consensus 700 ~I~~p-----~-----~Ae~Il~~GrADlValgR~~L~dP~W~l~aA~~l 739 (770)
T PRK08255 700 AISEA-----D-----HVNSIIAAGRADLCALARPHLADPAWTLHEAARI 739 (770)
T ss_pred CCCCH-----H-----HHHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHC
T ss_conf 88999-----9-----9999997699887524777651995099999975
No 261
>TIGR02631 xylA_Arthro xylose isomerase; InterPro: IPR013453 This is an enzyme which as well as interconverting D-xylose and D-xylulose, is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation, either Mg2+, Co2+ or Mn2+, as characterised in Arthrobacter . Enzymes in this entry differ substantially from the D-xylose isomerases of IPR013452 from INTERPRO.; GO: 0009045 xylose isomerase activity.
Probab=65.34 E-value=11 Score=18.29 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=60.1
Q ss_pred HHHHHHCCCCCEEEEEEC---CC---------HHHHHHHHHHCCCCCCEEEEEEECC-CCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 877652156750899724---60---------4677776530235531046664147-7768876520121048876544
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHA---YP---------QTMRSAVSVVRDTGICLLAVTVLTS-MDDFDLRESGYEKDISDMVRMR 147 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~---~~---------~~l~~~~~~~~~~~~~il~Vt~LTS-~~~~~l~~~g~~~~~~~~v~~~ 147 (238)
.+|.+++++|+..||.|= .| ..++.=.++.++.+.+|=.|| |. +++.-+++-+++.+ +..|++.
T Consensus 36 ~~V~kLAElGAyGv~fHD~DLiPfg~~~~~R~~~v~~F~~ALd~TGl~VPMvT--tNLF~~PvFKDGgFTsn-Dr~vR~y 112 (390)
T TIGR02631 36 EAVHKLAELGAYGVTFHDDDLIPFGASEAERDKIVKRFKKALDETGLKVPMVT--TNLFSHPVFKDGGFTSN-DRSVRRY 112 (390)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHCCCCCCCCCCCCCC-CHHHHHH
T ss_conf 99999886300245421366688988877899999999998884596544101--10025774337775688-7789999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEE-----CCHHCCCCC
Q ss_conf 542110244311134103445544202440355101135786579840036989999659989999-----853308888
Q gi|254780453|r 148 AVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV-----SRPIVRAAD 222 (238)
Q Consensus 148 a~~a~~~g~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVV-----GR~I~~a~d 222 (238)
| +||.+. . -.-+.+.||...|+ |-..-.++|
T Consensus 113 A--------------------lrK~l~---------------~---------~DL~aElGA~~~V~WgGREGaE~~~~kd 148 (390)
T TIGR02631 113 A--------------------LRKVLR---------------N---------IDLAAELGAETYVVWGGREGAEYDGAKD 148 (390)
T ss_pred H--------------------HHHHHH---------------H---------HHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 9--------------------999987---------------5---------2023311540376538845431101578
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999986651
Q gi|254780453|r 223 PVSAAQEFQRAISLI 237 (238)
Q Consensus 223 P~~aa~~i~~~i~~~ 237 (238)
-.+++-+++|.++.+
T Consensus 149 ~~~alDr~rEa~~~~ 163 (390)
T TIGR02631 149 VRAALDRMREALDLL 163 (390)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999998999999
No 262
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.12 E-value=12 Score=18.14 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=9.5
Q ss_pred HHHHCCCCCEEEEEE
Q ss_conf 765215675089972
Q gi|254780453|r 83 IEHIANMGVAMLTVH 97 (238)
Q Consensus 83 v~~~~~~g~d~iTvH 97 (238)
.+.+.++|+|.+-+.
T Consensus 92 a~~a~~~Gad~v~v~ 106 (296)
T TIGR03249 92 ARLAEKAGADGYLLL 106 (296)
T ss_pred HHHHHHCCCCEEEEC
T ss_conf 999987599978977
No 263
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=63.78 E-value=12 Score=18.10 Aligned_cols=100 Identities=20% Similarity=0.348 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECC-----CCH--HHHHHHHCCCC--HHHH
Q ss_conf 04246789877652156750899724604677776530235531046664147-----776--88765201210--4887
Q gi|254780453|r 73 FDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTS-----MDD--FDLRESGYEKD--ISDM 143 (238)
Q Consensus 73 ~DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS-----~~~--~~l~~~g~~~~--~~~~ 143 (238)
+-||.-+-.++..+++.|..=+-|.. +.+++||..|=- .-+ ++|+++|...= .=+.
T Consensus 408 G~ip~dlD~av~qVa~~GgTPLvVc~---------------dn~iyGVIyLKDiVK~Gi~ERF~qLR~~GikTiM~TGDN 472 (675)
T TIGR01497 408 GRIPKDLDEAVDQVAKQGGTPLVVCV---------------DNKIYGVIYLKDIVKSGIKERFEQLRKMGIKTIMLTGDN 472 (675)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEE---------------CCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 97783767889998732898479997---------------577898898730137860457888722586689972897
Q ss_pred HHHHHHHHHHCCCCCCC--CCCHH-HHHHHHHHCCCCEE-EEECCCCCCCCCCC
Q ss_conf 65445421102443111--34103-44554420244035-51011357865798
Q gi|254780453|r 144 VRMRAVQARDIGMGGIV--CSPQE-VRMVREIVGHNMVI-VTPGIRMLGSATDG 193 (238)
Q Consensus 144 v~~~a~~a~~~g~~GvV--~s~~e-i~~ir~~~~~~~~~-itPGI~~~~~~~~d 193 (238)
-..=+..|+|+|+|+|+ |.|++ ++.+|+.=.+.-++ +| |+.+||
T Consensus 473 rlTAa~IA~EAGVDdFiAEa~PEdKi~~I~~eQaeGkLVAMT------GDGTND 520 (675)
T TIGR01497 473 RLTAAVIAKEAGVDDFIAEATPEDKIEVIKKEQAEGKLVAMT------GDGTND 520 (675)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEC------CCCCCC
T ss_conf 578999997628885201588367899998751178179774------889760
No 264
>TIGR00339 sopT sulfate adenylyltransferase; InterPro: IPR002650 This entry consists of ATP-sulphurylase or sulphate adenylyltransferase (2.7.7.4 from EC0 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate . ATP sulphurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate .; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation.
Probab=63.62 E-value=4.7 Score=20.72 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=18.8
Q ss_pred CCEECCHHHHHHC-------CCCEEEECCH
Q ss_conf 4003698999965-------9989999853
Q gi|254780453|r 194 QKRFATPETALKY-------GASHIVVSRP 216 (238)
Q Consensus 194 q~r~~tp~~Ai~~-------GaD~iVVGR~ 216 (238)
-.||+.|.||+-. ||.+-||||-
T Consensus 293 ~MryaGPrEA~~Ha~iR~N~GaTHFIvGRD 322 (424)
T TIGR00339 293 AMRYAGPREAIWHAIIRKNYGATHFIVGRD 322 (424)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 421257589998899986179856665266
No 265
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=63.04 E-value=6.5 Score=19.85 Aligned_cols=77 Identities=26% Similarity=0.368 Sum_probs=50.4
Q ss_pred HHHHCCCCCCCCC-------------CHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf 2110244311134-------------103445544202440-35510113578657984003698999965998999985
Q gi|254780453|r 150 QARDIGMGGIVCS-------------PQEVRMVREIVGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 150 ~a~~~g~~GvV~s-------------~~ei~~ir~~~~~~~-~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
.+-..|++|++.| +.-+..+++.++... ++++.|||-- .+ .-.|+..|||..=+||
T Consensus 234 ~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G-~D---------v~KAlALGA~~v~igr 303 (360)
T COG1304 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSG-LD---------VAKALALGADAVGIGR 303 (360)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH-HH---------HHHHHHHCCCHHHHHH
T ss_conf 6336882289997678740257877699999999971887179963887877-89---------9999993776545259
Q ss_pred HHCCC--CC----HHHHHHHHHHHHHH
Q ss_conf 33088--88----89999999998665
Q gi|254780453|r 216 PIVRA--AD----PVSAAQEFQRAISL 236 (238)
Q Consensus 216 ~I~~a--~d----P~~aa~~i~~~i~~ 236 (238)
|...+ .. -.+..+-++++++.
T Consensus 304 p~L~~l~~~g~~GV~~~le~~~~El~~ 330 (360)
T COG1304 304 PFLYGLAAGGEAGVERVLEIIRKELKI 330 (360)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999855687899999999999999
No 266
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=62.85 E-value=13 Score=18.00 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=19.1
Q ss_pred CCHHHH---HH-CCCCEEEECCHHCCCCCHHHHH
Q ss_conf 698999---96-5998999985330888889999
Q gi|254780453|r 198 ATPETA---LK-YGASHIVVSRPIVRAADPVSAA 227 (238)
Q Consensus 198 ~tp~~A---i~-~GaD~iVVGR~I~~a~dP~~aa 227 (238)
.|+++| ++ .|+|.+-+||+.+...-.-...
T Consensus 193 ~s~~d~~~~~~~tg~dgvMigRgal~nP~iF~~i 226 (231)
T cd02801 193 FSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHH
T ss_conf 9999999999850999999878887698899999
No 267
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=62.72 E-value=13 Score=17.98 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=14.9
Q ss_pred CCCCCCEECCHHHHHH-------CCCCEEEECCHH
Q ss_conf 5798400369899996-------599899998533
Q gi|254780453|r 190 ATDGQKRFATPETALK-------YGASHIVVSRPI 217 (238)
Q Consensus 190 ~~~dq~r~~tp~~Ai~-------~GaD~iVVGR~I 217 (238)
...=|..+...++|+. .|||++.|=-+.
T Consensus 209 rktYQmd~~n~~eAl~e~~~D~~EGAD~lMVKP~~ 243 (314)
T cd00384 209 RKTYQMDPANRREALREVELDIEEGADILMVKPAL 243 (314)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 44443599877999999985476199869852641
No 268
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=62.05 E-value=13 Score=17.90 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCCCCCC-CCCH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 2443111-3410--34455442024403551011357865798400369899996599899998
Q gi|254780453|r 154 IGMGGIV-CSPQ--EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 154 ~g~~GvV-~s~~--ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
-++.|+= ++++ ...++++..++++.+++ |- |. ..-+++..|++-.+-|
T Consensus 151 ~nv~giK~s~~d~~~~~~~~~~~~~~~~v~~-G~--------d~----~~~~~l~~G~~G~i~~ 201 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLS-GD--------DD----LLLPALALGADGAISG 201 (281)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCEEEC-CC--------HH----HHHHHHHCCCCCEEEC
T ss_conf 9989998488999999999997599705626-96--------68----8999987289814402
No 269
>PRK13753 dihydropteroate synthase; Provisional
Probab=61.88 E-value=13 Score=17.88 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHH-HCCCCCEEEECHHHHHCCCH--HHHHHHHHHCHHHHHHHH--HCCH--HHHHHHHHHHHCCCCCEEE
Q ss_conf 998999999997-38852289986899842558--999999851546678776--4042--4678987765215675089
Q gi|254780453|r 22 PTVKEAERIVSI-LSDTVSFYKIGYHLSFSGGL--ELARDLISDGKSVFLDMK--LFDI--GSSVTAAIEHIANMGVAML 94 (238)
Q Consensus 22 ~~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G~--~~i~~l~k~~~~If~D~K--~~DI--pnTv~~~v~~~~~~g~d~i 94 (238)
.+.+++++-+.+ +..-.+++-||-+.--.... ..-+|+.+.. |++.-++ +..| -..-...++.+.+.|++++
T Consensus 22 ~~~~~a~~~a~~mi~~GAdIIDIGgeSTRPga~~vs~eeE~~Rv~-pvi~~l~~~~~~iSIDT~~~~Va~~Al~~Ga~iI 100 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIA-PLLDALSDQMHRVSIDSFQPETQRYALKRGVGYL 100 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCEE
T ss_conf 899999999999998799699979877899998089999999999-9999998608967997885999999998397788
Q ss_pred E-EECCC--HHHHHHHH
Q ss_conf 9-72460--46777765
Q gi|254780453|r 95 T-VHAYP--QTMRSAVS 108 (238)
Q Consensus 95 T-vH~~~--~~l~~~~~ 108 (238)
+ |.++. .|+..+.+
T Consensus 101 NDIsG~~d~~m~~~va~ 117 (279)
T PRK13753 101 NDIQGFPDPALYPDIAE 117 (279)
T ss_pred ECCCCCCCHHHHHHHHH
T ss_conf 45010338368999997
No 270
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=61.85 E-value=13 Score=17.88 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99996599899998533088888999999999866
Q gi|254780453|r 201 ETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 201 ~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
-|.+.+||+.+=||-+++.. . .+..+++.++|+
T Consensus 255 iE~ilAGAsaVQv~Ta~~~~-G-~~v~~~i~~eL~ 287 (333)
T PRK07565 255 IKMLLAGADVVMIASALLRH-G-PDYIGTILAGLE 287 (333)
T ss_pred HHHHHCCCCHHEEEHHHHHH-C-CHHHHHHHHHHH
T ss_conf 99998098863362236653-7-279999999999
No 271
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=61.74 E-value=4.3 Score=21.02 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHCCCCCEEEEEECC
Q ss_conf 776521567508997246
Q gi|254780453|r 82 AIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 82 ~v~~~~~~g~d~iTvH~~ 99 (238)
+-|.++++||||||+|..
T Consensus 149 ArKcVK~fGAdmvTiHlI 166 (401)
T TIGR00381 149 ARKCVKEFGADMVTIHLI 166 (401)
T ss_pred HHHHHHHHCCCEEEEEEE
T ss_conf 888887627663886443
No 272
>PRK04554 consensus
Probab=61.30 E-value=10 Score=18.56 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=13.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 988999607998999999997388522899
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYK 42 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iK 42 (238)
+++.+=--..+.+=+.++++.++-..+-++
T Consensus 5 ~~~~ifsgss~~~La~~ia~~Lg~~l~~~~ 34 (327)
T PRK04554 5 DSLMVFTGNANPELAQRVVRHLDISLGNAS 34 (327)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 757999789989999999999689841228
No 273
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=60.86 E-value=14 Score=17.77 Aligned_cols=152 Identities=16% Similarity=0.265 Sum_probs=80.0
Q ss_pred HHHHHHHHHCC------HHHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH--
Q ss_conf 46678776404------24678987765215675089972460--467777653023553104666414777688765--
Q gi|254780453|r 64 KSVFLDMKLFD------IGSSVTAAIEHIANMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRE-- 133 (238)
Q Consensus 64 ~~If~D~K~~D------IpnTv~~~v~~~~~~g~d~iTvH~~~--~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~-- 133 (238)
.|||.--=..| .|+|...++.++...+++++=..|+- +-|+.-++..-...... |+.+ . |..|.+
T Consensus 196 lPi~iSGti~d~sGr~LsGqt~~Af~~sl~~~~~~~iGLNCAlGpdel~~h~~~Ls~~~~~~--Vs~~--P-NAGLPn~~ 270 (1265)
T TIGR02082 196 LPIMISGTIVDTSGRTLSGQTLEAFLASLEHAEILIIGLNCALGPDELRPHVKELSEHAEAY--VSVH--P-NAGLPNAF 270 (1265)
T ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCEE--EEEE--C-CCCCCCCC
T ss_conf 87688602622768720262089999985468730241231147778999999987008813--8883--3-78881004
Q ss_pred ---HHCCCCHHHHHHHHHHHHHHCCCCCCC--C---CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH
Q ss_conf ---201210488765445421102443111--3---41034455442024403551011357865798400369899996
Q gi|254780453|r 134 ---SGYEKDISDMVRMRAVQARDIGMGGIV--C---SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK 205 (238)
Q Consensus 134 ---~g~~~~~~~~v~~~a~~a~~~g~~GvV--~---s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~ 205 (238)
..|.-.-+++...+...|.+.++. +| | -|+.|+.+=+.+. =+.|=-+++.. --..-..+--+++.
T Consensus 271 G~~AeY~l~P~~~A~~l~~fa~eg~ln-iVGGCCGTTP~HIraiA~aVk----~i~Pr~~~~ta--~~~~~~~Sgle~~~ 343 (1265)
T TIGR02082 271 GKQAEYDLTPDELAKALKDFAEEGGLN-IVGGCCGTTPDHIRAIAEAVK----DIKPRKRPETA--LYEPSRLSGLEAIT 343 (1265)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCEE-EEECCCCCCHHHHHHHHHHHH----CCCCCCCCCCC--CCHHHHHHCCCCCC
T ss_conf 777687555789999999999863903-774268996789999999981----68768887655--63246763031346
Q ss_pred CC--CCEEEEC-----------CHHCCCCCHHHHH
Q ss_conf 59--9899998-----------5330888889999
Q gi|254780453|r 206 YG--ASHIVVS-----------RPIVRAADPVSAA 227 (238)
Q Consensus 206 ~G--aD~iVVG-----------R~I~~a~dP~~aa 227 (238)
.+ +.|++|| |-...++|--++.
T Consensus 344 ~~~~~~FvniGERtNv~GS~KF~~li~aedY~~~L 378 (1265)
T TIGR02082 344 IAQESNFVNIGERTNVAGSKKFRKLIIAEDYDEAL 378 (1265)
T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHH
T ss_conf 36635668874300787686799985123846887
No 274
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=60.26 E-value=14 Score=17.70 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----
Q ss_conf 604677776530235531046664147776887652012104887654454211024431113410344554420-----
Q gi|254780453|r 99 YPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIV----- 173 (238)
Q Consensus 99 ~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ir~~~----- 173 (238)
-++.++++.+.+.+.++.|.+- ..+....++.+|++.++.=.|.+++++..++...
T Consensus 105 dp~vl~aale~~~~~rPLlyaA-------------------t~~N~~~m~~lA~~~~~Pv~v~a~~dl~~l~~L~~~l~~ 165 (384)
T pfam03599 105 DPEVLKAALEVAEDERPLLYAA-------------------TLDNYKEIAELALEYKHPVLLWSINDLNELKNLNRKLLK 165 (384)
T ss_pred CHHHHHHHHHHHCCCCCEEEEC-------------------CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9999999999746589778548-------------------998999999999974982899748889999999999997
Q ss_pred -CCCCEEEEECCCCCCCCCCC
Q ss_conf -24403551011357865798
Q gi|254780453|r 174 -GHNMVIVTPGIRMLGSATDG 193 (238)
Q Consensus 174 -~~~~~~itPGI~~~~~~~~d 193 (238)
|-.-+++-||=++.|....+
T Consensus 166 ~GikdlVLDPgT~~~g~~l~~ 186 (384)
T pfam03599 166 AGVKDIVLDPTTEALGYGIKD 186 (384)
T ss_pred CCCCCEEECCCCCCCCCCHHH
T ss_conf 698548988988666746899
No 275
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=60.19 E-value=14 Score=17.70 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=5.8
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 6521567508997
Q gi|254780453|r 84 EHIANMGVAMLTV 96 (238)
Q Consensus 84 ~~~~~~g~d~iTv 96 (238)
+.+.+.|+|.+-+
T Consensus 88 ~~a~~~Gadav~v 100 (289)
T cd00951 88 QAAEKAGADGILL 100 (289)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999759999997
No 276
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.13 E-value=5.2 Score=20.45 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=37.6
Q ss_pred HHHHHHHHHHCHHHHHHHHHCC---HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8999999851546678776404---2467898776521567508997246046777765302355310466
Q gi|254780453|r 53 LELARDLISDGKSVFLDMKLFD---IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAV 120 (238)
Q Consensus 53 ~~~i~~l~k~~~~If~D~K~~D---IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~V 120 (238)
.+++++|+++|..|++|-..++ +++......+.+.+ .+|++.+-+..|++-.+.+.....+.-++||
T Consensus 3 ~~l~~~l~~~g~~v~l~~~~a~~l~~~~~~~~~~~e~~~-~~Dlii~iGGDGT~L~a~r~~~~~~iPilGi 72 (272)
T PRK02231 3 KNLFHWLMERGYQVLVEKEVGETLELSFNHLASLEEIGQ-RAQLAIVIGGDGNMLGRARVLAKYDIPLIGI 72 (272)
T ss_pred HHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 899999997899999977998764998666479889701-7789999787589999999860059978965
No 277
>TIGR02134 transald_staph transaldolase; InterPro: IPR011861 This small family of proteins belong to the transaldolases. Coxiella and Staphylococcus lack members of the known transaldolase families and appear to require a transaldolase activity for completion of the pentose phosphate pathway..
Probab=59.82 E-value=9 Score=18.94 Aligned_cols=174 Identities=18% Similarity=0.269 Sum_probs=91.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCC--------HHHHHHHHHH--CHHHHHHHHHCCHHHHHHHH
Q ss_conf 9889996079989999999973885228998689984255--------8999999851--54667877640424678987
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGG--------LELARDLISD--GKSVFLDMKLFDIGSSVTAA 82 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G--------~~~i~~l~k~--~~~If~D~K~~DIpnTv~~~ 82 (238)
-++=|=-|--++|+.++.. ..++|.+|=.+.-|...-| .+.+.++-+. -|.||+| ==.++++.
T Consensus 4 LnVkvFaDGA~lEeM~k~~--~~~~v~GFTTNPsLM~kAGi~dY~aFA~ealaqItd~piSFEVFAD-----dL~~MEke 76 (237)
T TIGR02134 4 LNVKVFADGADLEEMVKAL--KNKLVKGFTTNPSLMKKAGISDYKAFAKEALAQITDLPISFEVFAD-----DLEEMEKE 76 (237)
T ss_pred CCEEEEECCCCHHHHHHHH--CCCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECC-----CHHHHHHH
T ss_conf 3246875641189999986--2893000017866674448664588999999734799624555403-----16568999
Q ss_pred HHHHCCCCCE----EEEEECCCH----HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHH--HCCCCHHHHHHHHHHHHH
Q ss_conf 7652156750----899724604----677776530235531046664147776887652--012104887654454211
Q gi|254780453|r 83 IEHIANMGVA----MLTVHAYPQ----TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRES--GYEKDISDMVRMRAVQAR 152 (238)
Q Consensus 83 v~~~~~~g~d----~iTvH~~~~----~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~--g~~~~~~~~v~~~a~~a~ 152 (238)
.+.++.||=. +=.+..-|+ .++..-+ .+++| =||.++..++ .++. -....++-+|.=+|.+.-
T Consensus 77 A~~ias~GnNV~vKIPvtntkGesT~PlIqkLSa----dgi~L-NvTA~~TieQ--v~~v~~~~t~gvP~iVSVFAGRiA 149 (237)
T TIGR02134 77 AEKIASYGNNVYVKIPVTNTKGESTIPLIQKLSA----DGIKL-NVTAVYTIEQ--VKKVVEALTEGVPAIVSVFAGRIA 149 (237)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH----CCCEE-EEEEECCHHH--HHHHHHHHHCCCCCEEEEECCEEE
T ss_conf 9999870793278841241889515307866402----48667-5435402588--999999874589817987212020
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH------HCCCCEEEECCHHC
Q ss_conf 0244311134103445544202440355101135786579840036989999------65998999985330
Q gi|254780453|r 153 DIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL------KYGASHIVVSRPIV 218 (238)
Q Consensus 153 ~~g~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai------~~GaD~iVVGR~I~ 218 (238)
++|.|-.=.=-.-++.++.. ||+.+- +++|+|.+ +-|+|+|=+-.-|.
T Consensus 150 DtGvDP~p~M~eAl~i~~qK---------~gveLL---------WASpRElfNiiQAd~iG~dIITc~~d~~ 203 (237)
T TIGR02134 150 DTGVDPLPLMKEALKIVRQK---------EGVELL---------WASPRELFNIIQADRIGVDIITCAADVV 203 (237)
T ss_pred CCCCCCHHHHHHHHHHHCCC---------CCCHHH---------CCCCHHHHHHHHHHHCCCEEEECHHHHH
T ss_conf 68998367899998865168---------872000---------2451145667747342840676206888
No 278
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=59.68 E-value=14 Score=17.64 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH--HHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 8776521567508997246----04677776530235531046664147776887--65201210488765445421102
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDL--RESGYEKDISDMVRMRAVQARDI 154 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l--~~~g~~~~~~~~v~~~a~~a~~~ 154 (238)
..++.+.++|+|-+++... |..++.+.+...... -++++-..-...+.+. .--+......-......+...+.
T Consensus 87 e~~~~ll~~GadkViigs~a~~~p~~~~~~~~~~G~q~-ivvsiD~k~~~~~~~~~v~~~g~~~~~~~~~~~~i~~~~~~ 165 (232)
T TIGR03572 87 EDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQL 165 (232)
T ss_pred HHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCCC-EEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 99999997699689934545219357789999869945-89999984167787279996677635798799999998735
Q ss_pred CCCCCCC---------CCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEECCHHHHH-HCCCCEEEECC
Q ss_conf 4431113---------4103445544202--440355101135786579840036989999-65998999985
Q gi|254780453|r 155 GMGGIVC---------SPQEVRMVREIVG--HNMVIVTPGIRMLGSATDGQKRFATPETAL-KYGASHIVVSR 215 (238)
Q Consensus 155 g~~GvV~---------s~~ei~~ir~~~~--~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~GaD~iVVGR 215 (238)
|+..+++ .+.+++.+++... +-.++.+.|++-.. | -.+++ ..|.|-+++|-
T Consensus 166 g~geii~tdI~~DG~~~G~d~~l~~~i~~~~~~piiasGGi~~~~----d------i~~l~~~~~~~gv~~gs 228 (232)
T TIGR03572 166 GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLD----D------LVEVALEAGASAVAAAS 228 (232)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHH----H------HHHHHHHCCCEEEEEEE
T ss_conf 998999988857685676899999999986899999988989999----9------99999858981999721
No 279
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=59.67 E-value=14 Score=17.64 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHCCC-CCEEEE---------CHHHHHC--CCHHHHHHHHHHCHH--HHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9989999999973885-228998---------6899842--558999999851546--6787764042467898776521
Q gi|254780453|r 22 PTVKEAERIVSILSDT-VSFYKI---------GYHLSFS--GGLELARDLISDGKS--VFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~-i~~iKi---------g~~l~~~--~G~~~i~~l~k~~~~--If~D~K~~DIpnTv~~~v~~~~ 87 (238)
.-.+|.+.++.+++|. ++.+-= |+++.-. .=...++.|++.|.+ +|.| .| ..+++...
T Consensus 71 a~teEml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD---~d-----~~qi~aa~ 142 (243)
T COG0854 71 APTEEMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID---PD-----PEQIEAAA 142 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC---CC-----HHHHHHHH
T ss_conf 74489999998559874785789646414555633550024699999999857976999727---99-----89999999
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 56750899724604
Q gi|254780453|r 88 NMGVAMLTVHAYPQ 101 (238)
Q Consensus 88 ~~g~d~iTvH~~~~ 101 (238)
.+|++.+-.|..++
T Consensus 143 ~~gA~~IELhTG~Y 156 (243)
T COG0854 143 EVGAPRIELHTGPY 156 (243)
T ss_pred HHCCCEEEEECCCC
T ss_conf 84998799843665
No 280
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.30 E-value=9.3 Score=18.84 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=45.0
Q ss_pred EEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCC-HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 9986899842558999999851546678776404-246789877652156750899724604677776530235531046
Q gi|254780453|r 41 YKIGYHLSFSGGLELARDLISDGKSVFLDMKLFD-IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLA 119 (238)
Q Consensus 41 iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~D-IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~ 119 (238)
.+.+.+-....-.++.++|.++|..+|+|-..+. .|+........+.+..+|++.+-+..|++-.+..... .++-++|
T Consensus 7 ~n~~k~~a~~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~a~~~~~-~~iPilG 85 (278)
T PRK03708 7 ARRDKEEALKLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAIGGDGTILRIEHKTK-KEIPILS 85 (278)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCC-CCCCEEE
T ss_conf 218998999999999999998899899974786566655556767543578789999878689999999647-8998898
Q ss_pred E
Q ss_conf 6
Q gi|254780453|r 120 V 120 (238)
Q Consensus 120 V 120 (238)
|
T Consensus 86 i 86 (278)
T PRK03708 86 I 86 (278)
T ss_pred E
T ss_conf 8
No 281
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=59.26 E-value=9.5 Score=18.76 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=15.7
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 024403551011357865798400369899996599899998
Q gi|254780453|r 173 VGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 173 ~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
+.++-+++|-|+..+. +..+|.++ .++-.+.|+.-++++
T Consensus 40 l~~gElvlTtg~~~~~-~~~~~~~~--i~~L~~~g~agL~i~ 78 (122)
T pfam07905 40 LRGGELLLTTGYGLKD-DPEALREF--VRELAEAGAAGLGIK 78 (122)
T ss_pred CCCCEEEEEECCCCCC-CHHHHHHH--HHHHHHCCCEEEEEE
T ss_conf 3698599972554479-99999999--999997896499994
No 282
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=58.77 E-value=15 Score=17.54 Aligned_cols=149 Identities=16% Similarity=0.275 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHCHHHH--HHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHCC--CCCCEEEEEEE
Q ss_conf 255899999985154667--877640424678987765215675089972460--467777653023--55310466641
Q gi|254780453|r 50 SGGLELARDLISDGKSVF--LDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP--QTMRSAVSVVRD--TGICLLAVTVL 123 (238)
Q Consensus 50 ~~G~~~i~~l~k~~~~If--~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~--~~l~~~~~~~~~--~~~~il~Vt~L 123 (238)
.+|..-+.|+.++- +-+ .|.++|=||+-=.+-++.+.++ +| .||+.. .-.+...+.+.. ....++.-.-+
T Consensus 50 ~fGENrvQE~~~K~-~~l~~~~i~wHfIG~LQsNKvk~i~~~-~~--~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNi 125 (222)
T cd00635 50 DFGENRVQEALDKA-EELPDPDIEWHFIGHLQTNKVKYAVRL-FD--LIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNI 125 (222)
T ss_pred CCCCCHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHHCC-CC--EEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 23677089999868-754888825999667623669987500-45--888778899999999999972999718999815
Q ss_pred CCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCCC-CCH-----H----HHHHHHH---HCC----CCEEEEECCC
Q ss_conf 477768876520121-04887654454211024431113-410-----3----4455442---024----4035510113
Q gi|254780453|r 124 TSMDDFDLRESGYEK-DISDMVRMRAVQARDIGMGGIVC-SPQ-----E----VRMVREI---VGH----NMVIVTPGIR 185 (238)
Q Consensus 124 TS~~~~~l~~~g~~~-~~~~~v~~~a~~a~~~g~~GvV~-s~~-----e----i~~ir~~---~~~----~~~~itPGI~ 185 (238)
+++. +..|+.. .+.+.+.....+ ....+.|+-| +|. + -+.+|+. +.. ++-.++=|-
T Consensus 126 ---s~e~-~K~G~~~~e~~~~~~~~~~~-~~l~~~GLM~i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMGM- 199 (222)
T cd00635 126 ---GGEE-SKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGM- 199 (222)
T ss_pred ---CCCC-CCCCCCHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC-
T ss_conf ---8875-55688999999999999966-89975103653699999799999999999999998764599939889814-
Q ss_pred CCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 5786579840036989999659989999853308
Q gi|254780453|r 186 MLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 186 ~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
+ +| -+.|++.||+.+=||++|..
T Consensus 200 ----S-~D------y~~AI~~GST~VRIGs~iFG 222 (222)
T cd00635 200 ----S-GD------FEIAIEEGATLVRIGTAIFG 222 (222)
T ss_pred ----H-HH------HHHHHHCCCCEEEECCHHCC
T ss_conf ----1-45------99999879997981632109
No 283
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=58.62 E-value=15 Score=17.55 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHCHHH-------------HHH-HHH-CCHHHHHHH-------HHHHHCCCCCEEEEEECCCH-HHHHH
Q ss_conf 25589999998515466-------------787-764-042467898-------77652156750899724604-67777
Q gi|254780453|r 50 SGGLELARDLISDGKSV-------------FLD-MKL-FDIGSSVTA-------AIEHIANMGVAMLTVHAYPQ-TMRSA 106 (238)
Q Consensus 50 ~~G~~~i~~l~k~~~~I-------------f~D-~K~-~DIpnTv~~-------~v~~~~~~g~d~iTvH~~~~-~l~~~ 106 (238)
..+..++++|+|++.+. ..| |+= +|||.|-+. .+..+.+.+ ...+|...|+ .++++
T Consensus 20 ~ea~~FV~~L~kr~~pYLFVTNNstrtPe~Va~~L~snfdipat~e~VfT~smAta~y~~~~k-~~~~vyViGEeGl~ea 98 (251)
T TIGR01457 20 EEAVEFVKELKKRDVPYLFVTNNSTRTPESVAELLASNFDIPATKEQVFTASMATADYLADLK-KEKSVYVIGEEGLKEA 98 (251)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHH
T ss_conf 678999998864798636872788888179999987516899972102344789999998328-8028999823678999
Q ss_pred HHHHC
Q ss_conf 65302
Q gi|254780453|r 107 VSVVR 111 (238)
Q Consensus 107 ~~~~~ 111 (238)
++.+.
T Consensus 99 ike~G 103 (251)
T TIGR01457 99 IKEAG 103 (251)
T ss_pred HHHCC
T ss_conf 98668
No 284
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.14 E-value=11 Score=18.36 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHCHHHHHHHHHCCHHHHH---HHH---HHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEE----
Q ss_conf 5899999985154667877640424678---987---765215675089972460467777653023553104666----
Q gi|254780453|r 52 GLELARDLISDGKSVFLDMKLFDIGSSV---TAA---IEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVT---- 121 (238)
Q Consensus 52 G~~~i~~l~k~~~~If~D~K~~DIpnTv---~~~---v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt---- 121 (238)
=.+++++|.+++..+++|-.+++.-+.- ... ........+|++.+-+..|++-.+.......++-++||-
T Consensus 18 ~~~Li~~L~~~g~~v~le~~~a~~l~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~iPilGiN~G~l 97 (290)
T PRK01911 18 IKRLFELLEEHGAEIYIEEEFLNFLTQDLKFEPKYKGFFDGNNFDFDMVISIGGDGTFLRAAARVGNSGIPILGINTGRL 97 (290)
T ss_pred HHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999999988998999768978776512566431232113577777999978768999999986125996899944881
Q ss_pred -EECCCCHHHHH
Q ss_conf -41477768876
Q gi|254780453|r 122 -VLTSMDDFDLR 132 (238)
Q Consensus 122 -~LTS~~~~~l~ 132 (238)
-||..+.+++.
T Consensus 98 GFL~~~~~~~~~ 109 (290)
T PRK01911 98 GFLADVSPEEIE 109 (290)
T ss_pred EEEECCCHHHHH
T ss_conf 375036888999
No 285
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=56.86 E-value=16 Score=17.34 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCH--HHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 678987765215675089972-4604--67777653023553104666414-7776887652012104887654454211
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTVH-AYPQ--TMRSAVSVVRDTGICLLAVTVLT-SMDDFDLRESGYEKDISDMVRMRAVQAR 152 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTvH-~~~~--~l~~~~~~~~~~~~~il~Vt~LT-S~~~~~l~~~g~~~~~~~~v~~~a~~a~ 152 (238)
..|...++.+.+.|+|.+-|- +..+ .|+.+.+++++.+..+.|.+..| |.-. . ++ ...++++.-.
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvH-t---------~e-~yv~~akel~ 166 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVH-T---------LE-YYVELAKELL 166 (472)
T ss_pred HHHHHHHHHHHHCCCCEEEECHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-C---------HH-HHHHHHHHHH
T ss_conf 89999999998648757972111046467999999999618636899874268865-2---------89-9999999999
Q ss_pred HCCCC--------CCCCCCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 02443--------11134103----44554420244035510113578657984003698999965998999
Q gi|254780453|r 153 DIGMG--------GIVCSPQE----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 153 ~~g~~--------GvV~s~~e----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
+.|+| |+ .+|.+ ++.+|+.++-. |++....+- +.-.+|--.|+++|+|.|=
T Consensus 167 ~~g~DSIciKDmaGl-ltP~~ayelVk~iK~~~~~p-------v~lHtH~Ts-G~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 167 EMGVDSICIKDMAGL-LTPYEAYELVKAIKKELPVP-------VELHTHATS-GMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred HCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCE-------EEEECCCCC-CHHHHHHHHHHHHCCCHHH
T ss_conf 727987884000026-98688999999999745970-------698504555-6179999999981764222
No 286
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=56.50 E-value=16 Score=17.30 Aligned_cols=74 Identities=8% Similarity=0.083 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHH-CCCCCEEEE-CH--HHHH---CCCHHHHHHHHHH---CHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
Q ss_conf 989999999973-885228998-68--9984---2558999999851---546678776404246789877652156750
Q gi|254780453|r 23 TVKEAERIVSIL-SDTVSFYKI-GY--HLSF---SGGLELARDLISD---GKSVFLDMKLFDIGSSVTAAIEHIANMGVA 92 (238)
Q Consensus 23 ~~~e~l~l~~~l-~~~i~~iKi-g~--~l~~---~~G~~~i~~l~k~---~~~If~D~K~~DIpnTv~~~v~~~~~~g~d 92 (238)
|.+...++++.+ ..-+.++=+ |. +++. .+=.++++...+. ..+++.--=-..+..+++. .+.+.+.|+|
T Consensus 19 D~~~l~~~v~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~t~~~i~~-a~~A~~~Gad 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIEL-TKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH-HHHHHHCCCC
T ss_conf 999999999999976999899684351242489999999999999971897507750787789999999-9999983999
Q ss_pred EEEEE
Q ss_conf 89972
Q gi|254780453|r 93 MLTVH 97 (238)
Q Consensus 93 ~iTvH 97 (238)
.+-+.
T Consensus 98 ai~v~ 102 (284)
T cd00950 98 AALVV 102 (284)
T ss_pred EEEEC
T ss_conf 89962
No 287
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=56.24 E-value=8.5 Score=19.08 Aligned_cols=25 Identities=44% Similarity=0.783 Sum_probs=19.5
Q ss_pred CCEECCHHHHH-------HCCCCEEEECCHHC
Q ss_conf 40036989999-------65998999985330
Q gi|254780453|r 194 QKRFATPETAL-------KYGASHIVVSRPIV 218 (238)
Q Consensus 194 q~r~~tp~~Ai-------~~GaD~iVVGR~I~ 218 (238)
-.|++.|+||+ ..||+..||||-=.
T Consensus 233 ~mryAGPrEAl~hAiiRkN~GcthfiVGRDHA 264 (356)
T cd00517 233 AMRYAGPREALWHAIIRKNYGATHFIVGRDHA 264 (356)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 43555558899999999976996588767667
No 288
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=56.21 E-value=16 Score=17.27 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCCCCCCCCH
Q ss_conf 4454211024431113410
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQ 164 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~ 164 (238)
+....+...|++-+++-+.
T Consensus 374 ~v~~~~~~~~id~v~~vG~ 392 (452)
T PRK10773 374 QVGEAAKAAGIDRVLSVGK 392 (452)
T ss_pred HHHHHHHHCCCCEEEEECH
T ss_conf 9999999769999999887
No 289
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.95 E-value=16 Score=17.24 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=15.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCC-CCEEEECHHHHHCCCH
Q ss_conf 889996079989999999973885-2289986899842558
Q gi|254780453|r 14 RLVVGLDLPTVKEAERIVSILSDT-VSFYKIGYHLSFSGGL 53 (238)
Q Consensus 14 ~livALD~~~~~e~l~l~~~l~~~-i~~iKig~~l~~~~G~ 53 (238)
++++..=..+..+++++++..... ++++=+..|+|...+.
T Consensus 79 pvi~G~~~~~t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~ 119 (309)
T cd00952 79 PVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDV 119 (309)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 09960575059999999999984698999988885889999
No 290
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=55.73 E-value=10 Score=18.54 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 41034455442024403551011357865798400369899996599899998
Q gi|254780453|r 162 SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 162 s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
+++-++.+|+....=.++|=.|||-.. +..+-.++|||.||=|
T Consensus 170 ~~e~i~~~k~~~~~I~LIVGGGIr~~E----------iA~~~v~aGAd~IVTG 212 (212)
T TIGR01769 170 SPETISLVKKKISSIPLIVGGGIRSPE----------IALKIVLAGADVIVTG 212 (212)
T ss_pred CHHHHHHHHHHCCCCCEEECCCCCCHH----------HHHHHHHHCCCEEECC
T ss_conf 667999999854897277527758889----------9999997089826349
No 291
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.33 E-value=16 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=9.8
Q ss_pred HCCCCEEEECCHHCCCCC
Q ss_conf 659989999853308888
Q gi|254780453|r 205 KYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 205 ~~GaD~iVVGR~I~~a~d 222 (238)
+.|.+-+|+--+|...++
T Consensus 258 ~s~i~~iv~TnTip~~~~ 275 (309)
T PRK01259 258 NSVLDELVVTDSIPLSEE 275 (309)
T ss_pred HCCCCEEEEECCCCCCHH
T ss_conf 089988998189668622
No 292
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=54.84 E-value=9.8 Score=18.68 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=20.2
Q ss_pred CCEECCHHHHHH-------CCCCEEEECCHHCCC
Q ss_conf 400369899996-------599899998533088
Q gi|254780453|r 194 QKRFATPETALK-------YGASHIVVSRPIVRA 220 (238)
Q Consensus 194 q~r~~tp~~Ai~-------~GaD~iVVGR~I~~a 220 (238)
-.|++.|+||+- .|+++.||||-=..-
T Consensus 259 ~mryAGPREAl~HAiiRkN~GcThfIVGRDHAGv 292 (390)
T PRK04149 259 AMRYAGPREAIFHALVRKNYGCTHFIVGRDHAGV 292 (390)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 4244797999999999987599669976666773
No 293
>PRK00830 consensus
Probab=54.75 E-value=17 Score=17.12 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCHHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCC-----CHH--------
Q ss_conf 042467898------776521567508997246----046777765302355310466641477-----768--------
Q gi|254780453|r 73 FDIGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSM-----DDF-------- 129 (238)
Q Consensus 73 ~DIpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~-----~~~-------- 129 (238)
..+|=|+-+ .++.+.+.|+|-+.+.+. |+.++++.+..... .-++++-.--.+ ++.
T Consensus 77 ~~~pi~vGGGIrs~e~~~~ll~~GadkVvIgS~a~~np~~v~~~~~~fGsq-~IvvsiD~k~~~~~~~~~~~~~~~~~~g 155 (273)
T PRK00830 77 VFIPLTVGGGIRSIEDIRQILRAGADKVSVNTAAVKNPEFIREASDIFGSQ-CIVVAIDCKRNYNPKDNPDKTIVELEDG 155 (273)
T ss_pred CCCCEEEECCEEECCCHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCC-EEEEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 699589608843773289999769863983798985907789999876990-5999998433766545676214540478
Q ss_pred --HHHHH---HCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCC
Q ss_conf --87652---012104887654454211024431113---------4103445544202--4403551011357865798
Q gi|254780453|r 130 --DLRES---GYEKDISDMVRMRAVQARDIGMGGIVC---------SPQEVRMVREIVG--HNMVIVTPGIRMLGSATDG 193 (238)
Q Consensus 130 --~l~~~---g~~~~~~~~v~~~a~~a~~~g~~GvV~---------s~~ei~~ir~~~~--~~~~~itPGI~~~~~~~~d 193 (238)
.+.+. +......-....+++...+.|+..+++ .+-+++.++++.. +-.++.+.|++-..
T Consensus 156 ~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~geil~tdI~rDGt~~G~d~~l~~~i~~~~~iPvIasGGv~~~~----- 230 (273)
T PRK00830 156 TCAWYEVVIYGGREFTGIDAVQWAKKVEELGAGEILLTSMDRDGTKDGYDIPITKKISEEVDIPVIASGGVGNPE----- 230 (273)
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHH-----
T ss_conf 742289997078033786799999999864988688878757796568896999999863799889988999999-----
Q ss_pred CCEECCHHHHHHC-CCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 4003698999965-998999985330888889999999998
Q gi|254780453|r 194 QKRFATPETALKY-GASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 194 q~r~~tp~~Ai~~-GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
.-.++++. ++|.+++|...+..+--...+++|...
T Consensus 231 -----di~~~~~~~~~~~v~~gs~f~~~~~si~e~k~~L~~ 266 (273)
T PRK00830 231 -----HIYEGFSDGKADAALAASIFHFNEYSIREVKEYLRE 266 (273)
T ss_pred -----HHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHHHH
T ss_conf -----999999838986887700566699799999999998
No 294
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=54.71 E-value=17 Score=17.11 Aligned_cols=133 Identities=15% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHCCCC-CEEEEEECCC-------------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHH
Q ss_conf 467898776521567-5089972460-------------46777765302355310466641477768876520121048
Q gi|254780453|r 76 GSSVTAAIEHIANMG-VAMLTVHAYP-------------QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDIS 141 (238)
Q Consensus 76 pnTv~~~v~~~~~~g-~d~iTvH~~~-------------~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~ 141 (238)
.+....++..+.+.+ +|++++.-++ +.+...+++.+.....-+.| -||. +..++
T Consensus 108 ~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~v-Kl~P-~~~di---------- 175 (310)
T COG0167 108 EEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFV-KLAP-NITDI---------- 175 (310)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEE-EECC-CHHHH----------
T ss_conf 78899999999750778879998538999774665439999999999998635686599-9388-88999----------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCC----------------------------------HHHHHHHHHHCCCCEEE-EECCCC
Q ss_conf 8765445421102443111341----------------------------------03445544202440355-101135
Q gi|254780453|r 142 DMVRMRAVQARDIGMGGIVCSP----------------------------------QEVRMVREIVGHNMVIV-TPGIRM 186 (238)
Q Consensus 142 ~~v~~~a~~a~~~g~~GvV~s~----------------------------------~ei~~ir~~~~~~~~~i-tPGI~~ 186 (238)
...+..+.+.|+||+++.- .-++++++.++.+.-++ +.||.-
T Consensus 176 ---~~iA~~~~~~g~Dgl~~~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s 252 (310)
T COG0167 176 ---DEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIET 252 (310)
T ss_pred ---HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf ---99999999749858999700366553012345556676777757510027899999999984289974898468696
Q ss_pred CCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 7865798400369899996599899998533088888999999999866
Q gi|254780453|r 187 LGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 187 ~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
- ...-|-+.+||+.+=||-+.+.. -| ...++|.+.|.
T Consensus 253 ~----------~DA~E~i~aGA~~vQv~Tal~~~-Gp-~i~~~I~~~l~ 289 (310)
T COG0167 253 G----------EDALEFILAGASAVQVGTALIYK-GP-GIVKEIIKGLA 289 (310)
T ss_pred H----------HHHHHHHHCCCCHHEEEEEEEEE-CC-HHHHHHHHHHH
T ss_conf 9----------99999998297564041121020-85-09999999999
No 295
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.68 E-value=17 Score=17.11 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE--CHH-HHH----CCCHHHHHHHHH-HCHHHHH----------HHHHCC--H----HH
Q ss_conf 9989999999973885228998--689-984----255899999985-1546678----------776404--2----46
Q gi|254780453|r 22 PTVKEAERIVSILSDTVSFYKI--GYH-LSF----SGGLELARDLIS-DGKSVFL----------DMKLFD--I----GS 77 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i~~iKi--g~~-l~~----~~G~~~i~~l~k-~~~~If~----------D~K~~D--I----pn 77 (238)
-.++++++.+.+++ -+++++ +.| .+. ..+.+-++++.+ ++.+|.. .+=..| . =.
T Consensus 13 ~ple~a~~~aa~lG--ydgVEi~~~~ph~~~~~~~~~~~~~ik~l~~~~gl~v~~~~p~~~~~~~~l~~~d~~~R~~~i~ 90 (276)
T PRK09856 13 LPIEHAFRDASELG--YDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLD 90 (276)
T ss_pred CCHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999849--9989973787654676546557999999999809868995532137765336798789899999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCC---------------HHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 78987765215675089972460---------------4677776530235531046664147
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAYP---------------QTMRSAVSVVRDTGICLLAVTVLTS 125 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~~---------------~~l~~~~~~~~~~~~~il~Vt~LTS 125 (238)
-...++..+..+|+..+.|++.. +.++...+.+.+.+..| ++--|+.
T Consensus 91 ~~k~~id~A~~Lga~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv~l-~lE~l~~ 152 (276)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL-ILEPLTP 152 (276)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE-EEEECCC
T ss_conf 9999999999849984999368777888979999999999999999999739989-9951761
No 296
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.49 E-value=17 Score=17.09 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=26.9
Q ss_pred HCCHHHHHHHHHHHHCCCCCEEEEE--ECCCHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 4042467898776521567508997--246046777765302355310466641
Q gi|254780453|r 72 LFDIGSSVTAAIEHIANMGVAMLTV--HAYPQTMRSAVSVVRDTGICLLAVTVL 123 (238)
Q Consensus 72 ~~DIpnTv~~~v~~~~~~g~d~iTv--H~~~~~l~~~~~~~~~~~~~il~Vt~L 123 (238)
=||+++++... .+.+.|++-++. +-.+ .++++.+-+....+++|+.|
T Consensus 24 gHd~gakvia~--~l~d~GfeVi~~g~~~tp---~e~v~aA~~~dv~vIgvSsl 72 (143)
T COG2185 24 GHDRGAKVIAR--ALADAGFEVINLGLFQTP---EEAVRAAVEEDVDVIGVSSL 72 (143)
T ss_pred CCCCCHHHHHH--HHHHCCCEEEECCCCCCH---HHHHHHHHHCCCCEEEEEEC
T ss_conf 44313199999--998579379815875899---99999998647988999734
No 297
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=54.43 E-value=17 Score=17.08 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCCEE-EEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 44554420244035-5101135786579840036989---999659989999853308888899999999986651
Q gi|254780453|r 166 VRMVREIVGHNMVI-VTPGIRMLGSATDGQKRFATPE---TALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 166 i~~ir~~~~~~~~~-itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
++++++.+++++-+ =+.||. |++ +.+.+|||.+=|+-+++. +. -..+.+|.++|+..
T Consensus 229 v~~~~~~~~~~ipIig~GGI~-------------~~~da~e~i~aGA~~VQv~Tal~~-~G-p~~i~~i~~~L~~~ 289 (290)
T pfam01180 229 IRELYQRVGPEIPIIGVGGIF-------------TGEDALEKILAGASAVQIGTALIF-GG-PFIFPKIIDELPEL 289 (290)
T ss_pred HHHHHHHCCCCCCEEEECCCC-------------CHHHHHHHHHCCCCHHHHHHHHHH-CC-CHHHHHHHHHHHHH
T ss_conf 999999708997499988949-------------999999999839979998589984-19-17999999999975
No 298
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.03 E-value=18 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=9.8
Q ss_pred HHHHHCCCCEEEECCH
Q ss_conf 9999659989999853
Q gi|254780453|r 201 ETALKYGASHIVVSRP 216 (238)
Q Consensus 201 ~~Ai~~GaD~iVVGR~ 216 (238)
-.++..|+|-.|.|-+
T Consensus 186 ~~~l~~Ga~G~i~~~~ 201 (279)
T cd00953 186 FSALRSGLDGSVAAAS 201 (279)
T ss_pred HHHHHCCCEEEEEHHH
T ss_conf 9999809979997089
No 299
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.84 E-value=14 Score=17.69 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=49.1
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCC---HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 89986899842558999999851546678776404---246789877652156750899724604677776530235531
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFD---IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGIC 116 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~D---IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~ 116 (238)
..|.+.+-....-.++..+|.++|..+++|-..+- .++.-......+.+ .+|++.+-+..|++-.+.+.....++-
T Consensus 11 v~k~~~~~~~~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~~~~~~~~-~~Dlvi~lGGDGTlL~~a~~~~~~~~P 89 (291)
T PRK02155 11 VGRYQTPGIAEPLEALAACIAKRGFEVVFEADTARNTGLTGYPALTPAEIGA-RADVAVVLGGDGTMLGIGRQLAPYGTP 89 (291)
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCC-CCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 9148986899999999999997889999955577763998877479799463-767899976788999999987115996
Q ss_pred EEEEE-----EECCCCHHHHH
Q ss_conf 04666-----41477768876
Q gi|254780453|r 117 LLAVT-----VLTSMDDFDLR 132 (238)
Q Consensus 117 il~Vt-----~LTS~~~~~l~ 132 (238)
++||- -||..+.+++.
T Consensus 90 ilGiN~G~lGFLt~~~~~~~~ 110 (291)
T PRK02155 90 LIGINHGRLGFITDIPLSDMQ 110 (291)
T ss_pred EEEEECCCEEECCCCCHHHHH
T ss_conf 899854751340688778899
No 300
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.82 E-value=18 Score=17.02 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred HCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 40424678987765215675089972460467777653023553104666414
Q gi|254780453|r 72 LFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLT 124 (238)
Q Consensus 72 ~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LT 124 (238)
.||+|..+-.. .+.+.|++-+.. +..-.-++.++++.+.+..++++|.|.
T Consensus 11 gHd~G~~iva~--~l~d~GfeVi~l-G~~~s~eeiv~~A~~e~ad~IglSsL~ 60 (122)
T cd02071 11 GHDRGAKVIAR--ALRDAGFEVIYT-GLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHHH--HHHHCCCEEEEC-CCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 22877999999--999789769967-998899999999997399899996465
No 301
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=53.48 E-value=18 Score=16.99 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 677776530235531046664147
Q gi|254780453|r 102 TMRSAVSVVRDTGICLLAVTVLTS 125 (238)
Q Consensus 102 ~l~~~~~~~~~~~~~il~Vt~LTS 125 (238)
.++.+.+.+...+..+.++.+.+.
T Consensus 15 lir~a~rlA~~~~a~l~vl~V~~~ 38 (124)
T cd01987 15 LIRRAARLADRLKAPWYVVYVETP 38 (124)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 999999999964998999999559
No 302
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=53.15 E-value=18 Score=16.95 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=47.5
Q ss_pred HCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 40424678987765215675089972460467777653023553104666414777688765201210488765445421
Q gi|254780453|r 72 LFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 72 ~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
.||+|..+-....... |.+.+.. +..-...+.++.+.+.++.++++|.+....-.. +++.+
T Consensus 11 ~H~iG~~iv~~~l~~~--G~~V~~l-G~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~---------~~~~i------- 71 (119)
T cd02067 11 GHDIGKNIVARALRDA--GFEVIDL-GVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTL---------MKEVI------- 71 (119)
T ss_pred HHHHHHHHHHHHHHHC--CCEEEEC-CCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHH---------HHHHH-------
T ss_conf 6778999999999978--9989989-999999999999997099999996220242689---------99999-------
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 1024431113410344554420244035510113578657984003698999965998999
Q gi|254780453|r 152 RDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 152 ~~~g~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
..+|+.--++..++..|.-+.. .+..+-+.|+|..-
T Consensus 72 ---------------~~l~~~g~~~i~v~vGG~~~~~----------~~~~~~~~Gad~~~ 107 (119)
T cd02067 72 ---------------EELKEAGLDDIPVLVGGAIVTR----------DFKFLKEIGVDAYF 107 (119)
T ss_pred ---------------HHHHHCCCCCCEEEEECCCCCH----------HHHHHHHCCCCEEE
T ss_conf ---------------9999769999859998998974----------39999986997997
No 303
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=53.05 E-value=14 Score=17.61 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=21.8
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 123115789889996079989999999973885228998
Q gi|254780453|r 5 LIIDVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKI 43 (238)
Q Consensus 5 ~~~~~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKi 43 (238)
|.|.+++++..+++.- .+.+=+.++++.++-..+-..+
T Consensus 13 ~~~~~~~~~~~ifsg~-s~~~La~~Ia~~Lg~~l~~~~~ 50 (331)
T PRK02812 13 LPLLSDNNRLRLFSGS-SNPALAQEVARYLGIDLGPMIR 50 (331)
T ss_pred CCCCCCCCCEEEEECC-CCHHHHHHHHHHHCCCCCCEEE
T ss_conf 8876899988999789-9999999999996898534078
No 304
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=52.70 E-value=18 Score=16.91 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=12.4
Q ss_pred HHHHHCCCCCEEEEEEC
Q ss_conf 77652156750899724
Q gi|254780453|r 82 AIEHIANMGVAMLTVHA 98 (238)
Q Consensus 82 ~v~~~~~~g~d~iTvH~ 98 (238)
.+..-++.|+|+.|||+
T Consensus 146 ~v~~qa~~GVdfmTIHa 162 (432)
T COG0422 146 TVEKQAEQGVDFMTIHA 162 (432)
T ss_pred HHHHHHHHCCCEEEEEH
T ss_conf 99999970875798431
No 305
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=52.37 E-value=8.7 Score=19.00 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHHH
Q ss_conf 445544202440355101135786579840036989999659-9899998533088888999999
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.+.+|+.+ +-.++.+.||+-+ ...++++..| +|++-+||+.+...|-.+.+++
T Consensus 281 ~~~ik~~~-~~Pvi~vG~i~~p----------~~ae~~l~~G~aD~V~~gR~llaDPd~~~K~~~ 334 (370)
T cd02929 281 IKFVKQVT-SKPVVGVGRFTSP----------DKMVEVVKSGILDLIGAARPSIADPFLPKKIRE 334 (370)
T ss_pred HHHHHHHC-CCCEEEECCCCCH----------HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHC
T ss_conf 99999860-8808997897999----------999999987994264534798769539999980
No 306
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=52.12 E-value=19 Score=16.85 Aligned_cols=195 Identities=22% Similarity=0.215 Sum_probs=88.5
Q ss_pred EEEEEECCC-HHHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHH----HCH-HHHHH---------HHHCCHHHHH
Q ss_conf 899960799-89999999973885228998689984255899999985----154-66787---------7640424678
Q gi|254780453|r 15 LVVGLDLPT-VKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLIS----DGK-SVFLD---------MKLFDIGSSV 79 (238)
Q Consensus 15 livALD~~~-~~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k----~~~-~If~D---------~K~~DIpnTv 79 (238)
-+..+..++ ++...++++.++.+-+ |+..++.-. |.+....... ..+ .+..+ +--.||..++
T Consensus 72 ~~~~l~~d~~i~~~~~vt~avH~~G~--~i~iQL~H~-Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii 148 (363)
T COG1902 72 GQPGLWSDAQIPGLKRLTEAVHAHGA--KIFIQLWHA-GRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVI 148 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 98665786673889999999985699--599982277-613322356787645777442566788888658999999999
Q ss_pred HH---HHHHHCCCCCEEEEEECCCHHH---------------------------HHHHHHHCC-CCCC-EEEEEEECCCC
Q ss_conf 98---7765215675089972460467---------------------------777653023-5531-04666414777
Q gi|254780453|r 80 TA---AIEHIANMGVAMLTVHAYPQTM---------------------------RSAVSVVRD-TGIC-LLAVTVLTSMD 127 (238)
Q Consensus 80 ~~---~v~~~~~~g~d~iTvH~~~~~l---------------------------~~~~~~~~~-~~~~-il~Vt~LTS~~ 127 (238)
.. +.+.+.+.|+|.|=||++-|.| .+.+++.++ .+.. .+++= | |..
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~R-l-s~~ 226 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVR-L-SPD 226 (363)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE-E-CCC
T ss_conf 99999999999839998998404444999855875577777668858999889999999999972988669999-7-745
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCCCCCC------------------HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 6887652012104887654454211024-43111341------------------0344554420244035510113578
Q gi|254780453|r 128 DFDLRESGYEKDISDMVRMRAVQARDIG-MGGIVCSP------------------QEVRMVREIVGHNMVIVTPGIRMLG 188 (238)
Q Consensus 128 ~~~l~~~g~~~~~~~~v~~~a~~a~~~g-~~GvV~s~------------------~ei~~ir~~~~~~~~~itPGI~~~~ 188 (238)
+. ....|. ++++. ..+++.-.+.| ++-+-+|. .....+|... .-.++.+.||+-.
T Consensus 227 d~-~~~~g~--~~~e~-~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~- 300 (363)
T COG1902 227 DF-FDGGGL--TIEEA-VELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-RIPVIAVGGINDP- 300 (363)
T ss_pred CC-CCCCCC--CHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCH-
T ss_conf 46-778888--89999-999999985588447996036445788744466412478999998860-7877986897999-
Q ss_pred CCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHHHHH
Q ss_conf 6579840036989999659-9899998533088888999999
Q gi|254780453|r 189 SATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 189 ~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~aa~~ 229 (238)
.+..+++++| +|.+-+||+.....|-...+++
T Consensus 301 ---------~~Ae~~l~~g~aDlVa~gR~~ladP~~v~k~~~ 333 (363)
T COG1902 301 ---------EQAEEILASGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred ---------HHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHC
T ss_conf ---------999999982998888726366509208999973
No 307
>PRK05259 consensus
Probab=51.95 E-value=17 Score=17.10 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=6.8
Q ss_pred HCCCCEEEECCHHC
Q ss_conf 65998999985330
Q gi|254780453|r 205 KYGASHIVVSRPIV 218 (238)
Q Consensus 205 ~~GaD~iVVGR~I~ 218 (238)
..|.|-+||--.|.
T Consensus 259 ~s~i~~vvvTdTi~ 272 (310)
T PRK05259 259 SSKLKELVITDSIQ 272 (310)
T ss_pred CCCCCEEEEECCCC
T ss_conf 28997899938978
No 308
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=51.86 E-value=18 Score=16.99 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=18.0
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCCEEEECH
Q ss_conf 8999607998999999997388522899868
Q gi|254780453|r 15 LVVGLDLPTVKEAERIVSILSDTVSFYKIGY 45 (238)
Q Consensus 15 livALD~~~~~e~l~l~~~l~~~i~~iKig~ 45 (238)
++++.|..+..++++++++-......+=+|.
T Consensus 38 i~~g~~~~~~~~~~~l~~~~~~i~~a~GiHP 68 (265)
T PRK10812 38 LAVATTLPGYLHMRDLVGERDNVVFSCGVHP 68 (265)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9953998999999999853998179950485
No 309
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=51.77 E-value=19 Score=16.81 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCCCCCCEEEE--EECCCHHHHHHHHHHHCCCCCEE---EECHHHHHCCCHHHHHHHHHH--CHHHHHHHHHCCHHHHHH
Q ss_conf 11578988999--60799899999999738852289---986899842558999999851--546678776404246789
Q gi|254780453|r 8 DVDEKKRLVVG--LDLPTVKEAERIVSILSDTVSFY---KIGYHLSFSGGLELARDLISD--GKSVFLDMKLFDIGSSVT 80 (238)
Q Consensus 8 ~~~kk~~livA--LD~~~~~e~l~l~~~l~~~i~~i---Kig~~l~~~~G~~~i~~l~k~--~~~If~D~K~~DIpnTv~ 80 (238)
.+.-+++++|| .|++|. ..-.+..+++.+ +.+ -+...-+.....+....+... ..++.+-+ +..-|...+
T Consensus 6 ~~~~~~~~~lAPM~gvtd~-~fR~l~~~~ga~-~l~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl-~gsdp~~la 82 (323)
T COG0042 6 LIELRNRVILAPMAGVTDL-PFRRLARELGAY-DLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQL-GGSDPELLA 82 (323)
T ss_pred CCCCCCCEEEECCCCCCCH-HHHHHHHHHCCC-CEEEEEEEECCHHHCCCHHHHHCCCCCCCCCCEEEEE-CCCCHHHHH
T ss_conf 5556787788348898668-999999995887-5289740453045527700443056456678779997-389989999
Q ss_pred HHHHHHCCCCCEEEEEECCC----------H--------HHHHHHHHHCCCCCCEEEEEEEC--CCCHHHHHHHHCCCCH
Q ss_conf 87765215675089972460----------4--------67777653023553104666414--7776887652012104
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYP----------Q--------TMRSAVSVVRDTGICLLAVTVLT--SMDDFDLRESGYEKDI 140 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~----------~--------~l~~~~~~~~~~~~~il~Vt~LT--S~~~~~l~~~g~~~~~ 140 (238)
.+.+.+.++|+|.+.+.+.+ | -+.+.+++.++.... +-||+=+ -+++.+
T Consensus 83 eaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~-iPVTVKiRlG~d~~~---------- 151 (323)
T COG0042 83 EAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGD-IPVTVKIRLGWDDDD---------- 151 (323)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHH----------
T ss_conf 999999866999898768999289808984477717989999999999985388-874999857878002----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCC----------C-C--HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH---
Q ss_conf 887654454211024431113----------4-1--03445544202440355101135786579840036989999---
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVC----------S-P--QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL--- 204 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~----------s-~--~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai--- 204 (238)
-.....++.+.++|++-+.. + + +.++.+|+.+.+-+++...+| .||++|.
T Consensus 152 -~~~~~ia~~~~~~G~~~ltVHgRtr~~~y~~~a~~~~I~~vk~~~~~ipvi~NGdI-------------~s~~~a~~~l 217 (323)
T COG0042 152 -ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDI-------------KSLEDAKEML 217 (323)
T ss_pred -CCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCC-------------CCHHHHHHHH
T ss_conf -00999999999679878999556676468986487999999986799759857994-------------9999999999
Q ss_pred H-CCCCEEEECCHHCCCCCH
Q ss_conf 6-599899998533088888
Q gi|254780453|r 205 K-YGASHIVVSRPIVRAADP 223 (238)
Q Consensus 205 ~-~GaD~iVVGR~I~~a~dP 223 (238)
+ .|+|-+.|||+.+....-
T Consensus 218 ~~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 218 EYTGADGVMIGRGALGNPWL 237 (323)
T ss_pred HHHCCCEEEECHHHHCCCHH
T ss_conf 84189879974353169557
No 310
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=51.32 E-value=12 Score=18.15 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=13.2
Q ss_pred ECCHH---HHHHCCCCEEEEC
Q ss_conf 36989---9996599899998
Q gi|254780453|r 197 FATPE---TALKYGASHIVVS 214 (238)
Q Consensus 197 ~~tp~---~Ai~~GaD~iVVG 214 (238)
..||+ .|+..||||||=|
T Consensus 235 iGtPeAvaAAF~LGA~FiVTG 255 (449)
T TIGR02814 235 IGTPEAVAAAFMLGADFIVTG 255 (449)
T ss_pred CCCHHHHHHHHHCCCCEEECC
T ss_conf 772799999973374257418
No 311
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=51.11 E-value=20 Score=16.75 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCC
Q ss_conf 43111341034455442024-403551011357865
Q gi|254780453|r 156 MGGIVCSPQEVRMVREIVGH-NMVIVTPGIRMLGSA 190 (238)
Q Consensus 156 ~~GvV~s~~ei~~ir~~~~~-~~~~itPGI~~~~~~ 190 (238)
+||+-.+|.-++.+++..+. .+.+||=-.++.|-.
T Consensus 245 aDG~HVhP~~~~ia~~~kg~~~i~LVTDam~a~G~~ 280 (380)
T COG1820 245 ADGVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLP 280 (380)
T ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 267506999999998615886499997155647898
No 312
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=51.10 E-value=14 Score=17.65 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHCCC-CCEEEECH-HHHHCCC----------HHHHHHHHHHCH--HHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9989999999973885-22899868-9984255----------899999985154--66787764042467898776521
Q gi|254780453|r 22 PTVKEAERIVSILSDT-VSFYKIGY-HLSFSGG----------LELARDLISDGK--SVFLDMKLFDIGSSVTAAIEHIA 87 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~-i~~iKig~-~l~~~~G----------~~~i~~l~k~~~--~If~D~K~~DIpnTv~~~v~~~~ 87 (238)
...++.++++.++.|. +|.+==.. ++-+..| .+++++|++.+. .+|.| -| ..+++.+.
T Consensus 70 a~~~emi~ia~~~kP~~vtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFID---Pd-----~~qi~~a~ 141 (234)
T cd00003 70 APTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFID---PD-----PEQIEAAK 141 (234)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC---CC-----HHHHHHHH
T ss_conf 79389999999849987898788878641788926654788999999999865982799727---98-----78999999
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 56750899724604
Q gi|254780453|r 88 NMGVAMLTVHAYPQ 101 (238)
Q Consensus 88 ~~g~d~iTvH~~~~ 101 (238)
+.|+|.+-+|..++
T Consensus 142 ~~Gad~VElhTG~Y 155 (234)
T cd00003 142 EVGADRVELHTGPY 155 (234)
T ss_pred HHCCCEEEEECHHH
T ss_conf 84939999824787
No 313
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.08 E-value=12 Score=18.15 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=31.3
Q ss_pred CCCCCCCCCCH-----H-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH----CC-CCEEEECCH
Q ss_conf 24431113410-----3-4455442024403551011357865798400369899996----59-989999853
Q gi|254780453|r 154 IGMGGIVCSPQ-----E-VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK----YG-ASHIVVSRP 216 (238)
Q Consensus 154 ~g~~GvV~s~~-----e-i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~----~G-aD~iVVGR~ 216 (238)
....|||+||. | +..+++.++.--+++-|= ..||.+...| .-+||+ .+ .|.+||||+
T Consensus 135 p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt-~VQG~~A~~e-----Iv~aI~~an~~~~~DvlIVaRG 202 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPT-LVQGEGAAEE-----IVEAIERANQRGDVDVLIVARG 202 (440)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCHHH-----HHHHHHHHHCCCCCCEEEEECC
T ss_conf 886899818705899999999875388872999821-4417870999-----9999998634589988999168
No 314
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.51 E-value=16 Score=17.24 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=45.8
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHC---CH-HH-HHHHH---HHHHCCCCCEEEEEECCCHHHHHHHHHHC
Q ss_conf 8998689984255899999985154667877640---42-46-78987---76521567508997246046777765302
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLF---DI-GS-SVTAA---IEHIANMGVAMLTVHAYPQTMRSAVSVVR 111 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~---DI-pn-Tv~~~---v~~~~~~g~d~iTvH~~~~~l~~~~~~~~ 111 (238)
+.|.+-+-....-.++.++|++++..+|+|-... .+ +. +.... ...+.+ .+|++.+-+..|++-.+.+...
T Consensus 11 v~k~~~~~~~~~~~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dlii~lGGDGTlL~a~r~~~ 89 (296)
T PRK04539 11 VTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGVKEGCIYTQDTVGCHIVNKTELGQ-YCDLVAVLGGDGTFLSVAREIA 89 (296)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCHHHHCC-CCCEEEEECCCHHHHHHHHHHH
T ss_conf 970898799999999999999787999996541120354643345655468678164-6779999787089999999860
Q ss_pred CCCCCEEEEE-----EECCCCHHHH
Q ss_conf 3553104666-----4147776887
Q gi|254780453|r 112 DTGICLLAVT-----VLTSMDDFDL 131 (238)
Q Consensus 112 ~~~~~il~Vt-----~LTS~~~~~l 131 (238)
..++-++||- -||..+.+++
T Consensus 90 ~~~~PilGiN~G~lGFLt~~~~~~~ 114 (296)
T PRK04539 90 PRAVPIIGINQGHLGFLTQIPREYM 114 (296)
T ss_pred HCCCCEEEEECCCEEEECCCCHHHH
T ss_conf 0599789984475445256687999
No 315
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=49.87 E-value=20 Score=16.62 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=5.7
Q ss_pred ECCCHHHHHHHHHH
Q ss_conf 24604677776530
Q gi|254780453|r 97 HAYPQTMRSAVSVV 110 (238)
Q Consensus 97 H~~~~~l~~~~~~~ 110 (238)
|++||+++...+..
T Consensus 24 ~~yPGav~~l~~~~ 37 (243)
T TIGR01459 24 EAYPGAVEALAKLK 37 (243)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 89516899999998
No 316
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=49.74 E-value=21 Score=16.61 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHHHHHH
Q ss_conf 4403551011357865798400369899996599899998533088888999999
Q gi|254780453|r 175 HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQE 229 (238)
Q Consensus 175 ~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~aa~~ 229 (238)
++..++..|=- .+|.-|-..|||+- ++|+.++.+-
T Consensus 164 ~~v~i~vGG~a------------~~~~~a~~~GAD~~--------a~da~~av~~ 198 (201)
T cd02070 164 DKVKVMVGGAP------------VNQEFADEIGADGY--------AEDAAEAVAI 198 (201)
T ss_pred CCCEEEEECCC------------CCHHHHHHHCCCEE--------CCCHHHHHHH
T ss_conf 89859998801------------79999999298878--------4799999998
No 317
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=49.71 E-value=15 Score=17.50 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=8.4
Q ss_pred CCCEEEECCHHCCCCCHHHHHHHH
Q ss_conf 998999985330888889999999
Q gi|254780453|r 207 GASHIVVSRPIVRAADPVSAAQEF 230 (238)
Q Consensus 207 GaD~iVVGR~I~~a~dP~~aa~~i 230 (238)
|.+.|||---|--+.--.+||+..
T Consensus 339 GK~~IIVDDmIDTgGTL~~AA~~L 362 (443)
T PTZ00145 339 DSDVIIVDDMIDTSGTLCEAAKQL 362 (443)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 987899677434556799999999
No 318
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=21 Score=16.56 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCCCEEEECHH-H----HH-CCCH----HHHHHHHHHCHHHHH-------HHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 85228998689-9----84-2558----999999851546678-------776404246789877652156750899724
Q gi|254780453|r 36 DTVSFYKIGYH-L----SF-SGGL----ELARDLISDGKSVFL-------DMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 36 ~~i~~iKig~~-l----~~-~~G~----~~i~~l~k~~~~If~-------D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
..++.+=+|.. + .. .+.. +.++..+++|++++. +.++-. +...++.+.+.|+|.+.+ +
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~----~~~~l~~l~e~GvDaviv-~ 99 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELET----LERYLDRLVELGVDAVIV-A 99 (347)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHCCCCEEEE-C
T ss_conf 69998995775011546533489899999999999869949999655416410568----999999999759878997-1
Q ss_pred CCHHHHHHHHH
Q ss_conf 60467777653
Q gi|254780453|r 99 YPQTMRSAVSV 109 (238)
Q Consensus 99 ~~~~l~~~~~~ 109 (238)
-++++.-+.+.
T Consensus 100 Dpg~i~l~~e~ 110 (347)
T COG0826 100 DPGLIMLARER 110 (347)
T ss_pred CHHHHHHHHHH
T ss_conf 88999999975
No 319
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=48.97 E-value=21 Score=16.53 Aligned_cols=150 Identities=14% Similarity=0.234 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHCHHHHH---HHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHH-HHHCCC--CCCEEEEEEE
Q ss_conf 558999999851546678---776404246789877652156750899724604-677776-530235--5310466641
Q gi|254780453|r 51 GGLELARDLISDGKSVFL---DMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQ-TMRSAV-SVVRDT--GICLLAVTVL 123 (238)
Q Consensus 51 ~G~~~i~~l~k~~~~If~---D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~-~l~~~~-~~~~~~--~~~il~Vt~L 123 (238)
+|..-+.++..+ ..-|. |.++|=||.-=.+-++.+.++ +-.+|+..- -+...+ +.+.+. ...++.-.
T Consensus 53 fGENrvQe~~~K-~~~l~~~~~i~WHfIG~LQsNK~k~v~~~---~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQV-- 126 (228)
T COG0325 53 FGENRVQEALDK-IEALKDLPDIEWHFIGPLQSNKVKLVAEN---FDWIHSLDRLKLAKELNKRALELPKPLNVLIQV-- 126 (228)
T ss_pred HCCHHHHHHHHH-HHHCCCCCCEEEEEECHHHHHHHHHHHHH---CCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE--
T ss_conf 233189999999-99647678817999641135679999842---423333077999999998997379886389999--
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHH---HCCCCCCCC-CC-H-H----------HHHHHHHHCCCCE---EEEECC
Q ss_conf 47776887652012104887654454211---024431113-41-0-3----------4455442024403---551011
Q gi|254780453|r 124 TSMDDFDLRESGYEKDISDMVRMRAVQAR---DIGMGGIVC-SP-Q-E----------VRMVREIVGHNMV---IVTPGI 184 (238)
Q Consensus 124 TS~~~~~l~~~g~~~~~~~~v~~~a~~a~---~~g~~GvV~-s~-~-e----------i~~ir~~~~~~~~---~itPGI 184 (238)
+.+.+. +..|+ ..+.+..++.... ...+.|+-| +| . + ++.+++.+..... .++=|-
T Consensus 127 -Ni~~E~-sK~G~---~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGM 201 (228)
T COG0325 127 -NISGEE-SKSGV---PPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGM 201 (228)
T ss_pred -ECCCCC-CCCCC---CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf -438862-33799---9899999999997489976757774179989979999999999999999987458978526867
Q ss_pred CCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCH
Q ss_conf 357865798400369899996599899998533088888
Q gi|254780453|r 185 RMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADP 223 (238)
Q Consensus 185 ~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP 223 (238)
.+| -..||+.||.++=||++|..+.++
T Consensus 202 ------S~D------~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 202 ------SND------YEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred ------CCC------HHHHHHCCCCEEEECHHHHCCCCC
T ss_conf ------625------999998599889970786187899
No 320
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=48.88 E-value=12 Score=18.08 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=12.3
Q ss_pred HHHHHCCCCEEEECCH
Q ss_conf 9999659989999853
Q gi|254780453|r 201 ETALKYGASHIVVSRP 216 (238)
Q Consensus 201 ~~Ai~~GaD~iVVGR~ 216 (238)
-+|++.|||++|-||-
T Consensus 153 ~~AL~~GADIVItGRv 168 (362)
T pfam07287 153 VEALRAGADIVITGRV 168 (362)
T ss_pred HHHHHCCCCEEEECCC
T ss_conf 9999719988985551
No 321
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=48.52 E-value=21 Score=16.49 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCEEEEECCC----CC------CCCCCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 44554420244035510113----57------86579840036989999659989999
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIR----ML------GSATDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~----~~------~~~~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
...+++. +++|.+++ |+- .. .-...|+-|...|- .+.|-||.||
T Consensus 272 ~e~i~e~-~~D~~vv~-GVPHAvp~e~l~~~e~~siTdGPR~v~Pl--ke~G~~~viv 325 (352)
T TIGR03282 272 AEIIEDE-DPDFAVIT-GVPHAVPIEELDGIECIAVTDGPRQVAPL--KELGYDYVVV 325 (352)
T ss_pred HHHHHHC-CCCEEEEE-CCCCCCCHHHCCCCEEEEECCCCCHHHHH--HHHCCCEEEE
T ss_conf 9998751-99889995-89876797881894799965896100226--7718655999
No 322
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=48.51 E-value=21 Score=16.49 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=23.7
Q ss_pred ECCHHHH---HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3698999---96599899998533088888999999999866
Q gi|254780453|r 197 FATPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 197 ~~tp~~A---i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
+.|.++| +.+||+.+=||-+++.. . .+..+++.++|+
T Consensus 246 I~s~~Da~e~ilAGAsaVQv~TA~~~~-G-~~i~~~i~~eL~ 285 (325)
T cd04739 246 VHDAEDVVKYLLAGADVVMTTSALLRH-G-PDYIGTLLAGLE 285 (325)
T ss_pred CCCHHHHHHHHHCCCCHHHEEHHHHHH-C-CHHHHHHHHHHH
T ss_conf 598999999998098876143234641-8-379999999999
No 323
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=48.07 E-value=22 Score=16.44 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=7.2
Q ss_pred HHHHCCCCCEEEEE
Q ss_conf 76521567508997
Q gi|254780453|r 83 IEHIANMGVAMLTV 96 (238)
Q Consensus 83 v~~~~~~g~d~iTv 96 (238)
.+.+.+.|+|.+-+
T Consensus 88 a~~A~~~Gadai~v 101 (296)
T PRK03620 88 AQAAERAGADGILL 101 (296)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99999829998996
No 324
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=48.00 E-value=22 Score=16.44 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHCCCC-CEEE---------ECHHHHHCCC--HHHHHHHHHHCH--HHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 9899999999738852-2899---------8689984255--899999985154--667877640424678987765215
Q gi|254780453|r 23 TVKEAERIVSILSDTV-SFYK---------IGYHLSFSGG--LELARDLISDGK--SVFLDMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~i-~~iK---------ig~~l~~~~G--~~~i~~l~k~~~--~If~D~K~~DIpnTv~~~v~~~~~ 88 (238)
..++.++++.++.|.- |.+= =||++...+. .+++++|++.+. .+|.| -| ..+++.+.+
T Consensus 74 pt~e~i~ia~~~kP~qvtLVPe~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFiD---Pd-----~~~i~~a~~ 145 (240)
T PRK05265 74 ATEEMLDIALEIKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---PD-----PEQIEAAAE 145 (240)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC---CC-----HHHHHHHHH
T ss_conf 8188999999849985998889988626788937765789999999999865981799727---98-----789999998
Q ss_pred CCCEEEEEECCCHH
Q ss_conf 67508997246046
Q gi|254780453|r 89 MGVAMLTVHAYPQT 102 (238)
Q Consensus 89 ~g~d~iTvH~~~~~ 102 (238)
+|+|.+-+|..++.
T Consensus 146 ~Gad~VElhTG~Ya 159 (240)
T PRK05265 146 VGADRIELHTGPYA 159 (240)
T ss_pred HCCCEEEEECHHHH
T ss_conf 49399998347878
No 325
>PRK05038 consensus
Probab=47.90 E-value=14 Score=17.62 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=10.7
Q ss_pred HCCCCEEEECCHHCCCCC
Q ss_conf 659989999853308888
Q gi|254780453|r 205 KYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 205 ~~GaD~iVVGR~I~~a~d 222 (238)
+.|.+-+|+--+|...++
T Consensus 263 ~s~i~~ivvTnTip~~~~ 280 (315)
T PRK05038 263 NSVIDEVIVTDTIPLSDE 280 (315)
T ss_pred CCCCCEEEEECCCCCCHH
T ss_conf 089988999289778945
No 326
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=47.53 E-value=22 Score=16.39 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=14.5
Q ss_pred CCCCCCCEECCHHHHHH-------CCCCEEEECCH
Q ss_conf 65798400369899996-------59989999853
Q gi|254780453|r 189 SATDGQKRFATPETALK-------YGASHIVVSRP 216 (238)
Q Consensus 189 ~~~~dq~r~~tp~~Ai~-------~GaD~iVVGR~ 216 (238)
+...=|..+.+.++|+. .|||++.|=-+
T Consensus 213 drktYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa 247 (320)
T cd04823 213 DKKTYQMDPANSREALREVALDIAEGADMVMVKPG 247 (320)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 80203379997799999998527519987996276
No 327
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=47.44 E-value=22 Score=16.38 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.4
Q ss_pred HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 965998999985330888889999999998665
Q gi|254780453|r 204 LKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 204 i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
+..|.||++++|+=+...+-.+..+++...++-
T Consensus 86 ~~~g~D~ViiaR~~a~~~~f~~L~~dL~~alk~ 118 (133)
T PRK01313 86 MAPGTDYVIVARRDALNAPFSQLTEELSRRIEA 118 (133)
T ss_pred CCCCCEEEEEECCHHCCCCHHHHHHHHHHHHHH
T ss_conf 689970899937111029999999999999998
No 328
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=47.34 E-value=12 Score=18.09 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHCH--HHHHHHHHCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5899999985154--6678776404246789877652156750899
Q gi|254780453|r 52 GLELARDLISDGK--SVFLDMKLFDIGSSVTAAIEHIANMGVAMLT 95 (238)
Q Consensus 52 G~~~i~~l~k~~~--~If~D~K~~DIpnTv~~~v~~~~~~g~d~iT 95 (238)
|.+++.++++..+ -.++|-+|+|||.+=.+-++-+...+...+|
T Consensus 216 GLdILn~iqk~~~~~v~I~~~Df~di~eVD~KLvklAk~~~g~lvT 261 (356)
T COG4956 216 GLDILNEIQKEDPIQVEIYEGDFEDIPEVDSKLVKLAKVTGGKLVT 261 (356)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCEEEE
T ss_conf 4679999986378738974588664245789999999996888972
No 329
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=47.11 E-value=22 Score=16.35 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7898776521567508997246
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~ 99 (238)
.....++.=.+-|+||+|||+.
T Consensus 140 ~~~~~ie~qa~~GVDfmTiH~G 161 (421)
T pfam01964 140 DLFDVIEEQAKDGVDFMTIHAG 161 (421)
T ss_pred HHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999999728877874000
No 330
>PRK04117 consensus
Probab=46.93 E-value=16 Score=17.30 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHCCC
Q ss_conf 989999999973885
Q gi|254780453|r 23 TVKEAERIVSILSDT 37 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~ 37 (238)
+.+=+.++++.++-.
T Consensus 12 ~~~La~~ia~~Lg~~ 26 (309)
T PRK04117 12 NPEFAKEVSKYLGLP 26 (309)
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 899999999997898
No 331
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=46.93 E-value=23 Score=16.33 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCEEEEEECC-----CHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHH--HHHHHHHHCHHHHHHHHHCCH
Q ss_conf 1123115789889996079-----98999999997388-522899868998425589--999998515466787764042
Q gi|254780453|r 4 GLIIDVDEKKRLVVGLDLP-----TVKEAERIVSILSD-TVSFYKIGYHLSFSGGLE--LARDLISDGKSVFLDMKLFDI 75 (238)
Q Consensus 4 ~~~~~~~kk~~livALD~~-----~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~--~i~~l~k~~~~If~D~K~~DI 75 (238)
++.-.++++.+++|=-|++ +.-=+.+.++.++| .-.-+.|-..+...||++ .++++.+.|..++. ..|=
T Consensus 47 ri~~A~~~~eki~i~GDyDvDGiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~~~~~~G~~Lii---TVD~ 123 (705)
T TIGR00644 47 RIIEAIENNEKILIFGDYDVDGITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALRELKENGVSLII---TVDN 123 (705)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEE---ECCC
T ss_conf 9999997289389996175226899999999999509973246662663577778898999999866983999---8268
Q ss_pred HHHHHHHHHHHCCCCCEEEEE--E-CCCHHHHHHHH
Q ss_conf 467898776521567508997--2-46046777765
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTV--H-AYPQTMRSAVS 108 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTv--H-~~~~~l~~~~~ 108 (238)
|-+...+++.+.+.|.|.+.. | ..++.+-++..
T Consensus 124 Gi~a~~e~~~a~~~G~dVIVtDHHC~~~~~lP~a~A 159 (705)
T TIGR00644 124 GISAHEEIEYAKELGIDVIVTDHHCLPPETLPEAAA 159 (705)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 742699999998669819997256798489986505
No 332
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=23 Score=16.32 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 678987765215675089972-46046777765302355310466641477768876
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTVH-AYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR 132 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTvH-~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~ 132 (238)
.|++-+++.+.++|+.-+-|. +++++...+.+...+. .++++||..+-+.+++.+
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~ 69 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQ 69 (186)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCE
T ss_conf 99999999887448615999843657899999844267-359999832265568852
No 333
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=46.76 E-value=23 Score=16.31 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCEECCHHHHHHCCC
Q ss_conf 7654454211024431113410-------------34455442024-403551011357865798400369899996599
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVCSPQ-------------EVRMVREIVGH-NMVIVTPGIRMLGSATDGQKRFATPETALKYGA 208 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~-~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~Ga 208 (238)
+..+-+.+|.++|..|+=.+-| -+..+-+.+++ -.+++=-|||--. ..-.|+..||
T Consensus 238 Q~~ED~~~al~AGASGIWV~NHG~RQl~~~PaaFD~L~~vAE~V~~rVPIVFDSGvRRG~----------Hv~KALASGA 307 (368)
T TIGR02708 238 QCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQ----------HVFKALASGA 307 (368)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHH----------HHHHHHHCCC
T ss_conf 886689999972886257604775023678752000699999852855668508843257----------8999872356
Q ss_pred CEEEECCHHCC------CCCHHHHHHHHHHHHHHH
Q ss_conf 89999853308------888899999999986651
Q gi|254780453|r 209 SHIVVSRPIVR------AADPVSAAQEFQRAISLI 237 (238)
Q Consensus 209 D~iVVGR~I~~------a~dP~~aa~~i~~~i~~~ 237 (238)
|.+-+|||+.- +-=-++..+.++++++.+
T Consensus 308 D~VAlGRPv~yGLAlGG~~G~~~V~~~l~~~L~~V 342 (368)
T TIGR02708 308 DLVALGRPVIYGLALGGSVGARQVLEYLNKELKRV 342 (368)
T ss_pred CEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 44301323566655010221899999999887777
No 334
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=46.43 E-value=23 Score=16.28 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=45.2
Q ss_pred CCCCCCCEEE-EE--ECCCHHHHHHHHHHHCCCC------CEEEECHH--------HHHCCCH-HHHHHH---HH-HCHH
Q ss_conf 1157898899-96--0799899999999738852------28998689--------9842558-999999---85-1546
Q gi|254780453|r 8 DVDEKKRLVV-GL--DLPTVKEAERIVSILSDTV------SFYKIGYH--------LSFSGGL-ELARDL---IS-DGKS 65 (238)
Q Consensus 8 ~~~kk~~liv-AL--D~~~~~e~l~l~~~l~~~i------~~iKig~~--------l~~~~G~-~~i~~l---~k-~~~~ 65 (238)
++-...++++ |= =+.+.+.++++++++.... .++|-.+. .|-..|. ++++.| ++ ++.+
T Consensus 10 ~ig~~~p~~~iaGPC~vEs~e~~~~iA~~l~~~~~~~~~~~ifK~sfdkaNRTS~~sfqG~G~eegL~~L~~ik~~~gl~ 89 (281)
T PRK12457 10 TVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVP 89 (281)
T ss_pred EECCCCCEEEEECCCHHHCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 88899805899166466599999999999999999729987843778877689997778988899999999999987996
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC----HHHHHHHHH
Q ss_conf 67877640424678987765215675089972460----467777653
Q gi|254780453|r 66 VFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP----QTMRSAVSV 109 (238)
Q Consensus 66 If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~----~~l~~~~~~ 109 (238)
|.-| .|| ...++.+.+. +|++-|-+.- +.++++.+.
T Consensus 90 viTe--Vh~-----~~q~~~v~e~-vDilQIpAr~~rqtdLL~a~~~t 129 (281)
T PRK12457 90 VITD--VHE-----VEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKT 129 (281)
T ss_pred EEEE--ECC-----HHHHHHHHHH-HHHEEECHHHCCCCHHHHHHHHC
T ss_conf 7998--588-----8899999865-02123443750281899999973
No 335
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.16 E-value=23 Score=16.26 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=17.5
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 115789889996079989999999973885228998
Q gi|254780453|r 8 DVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKI 43 (238)
Q Consensus 8 ~~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKi 43 (238)
.+..|+-.++++- .+.+=+.++++.++-..+-..+
T Consensus 4 ~~~~~~~~ifsgs-s~~~La~~ia~~Lg~~l~~~~~ 38 (323)
T PRK02458 4 RYADKQIKLFSLN-SNLPIAEKIAKAAGIPLGKLSS 38 (323)
T ss_pred CCCCCCEEEEECC-CCHHHHHHHHHHHCCCCCCEEE
T ss_conf 4579975999799-9999999999996898412188
No 336
>KOG0840 consensus
Probab=45.70 E-value=9.8 Score=18.68 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCCCHHHH
Q ss_conf 113410344554420244035510113578-6579840036989999659-9899998533088888999
Q gi|254780453|r 159 IVCSPQEVRMVREIVGHNMVIVTPGIRMLG-SATDGQKRFATPETALKYG-ASHIVVSRPIVRAADPVSA 226 (238)
Q Consensus 159 vV~s~~ei~~ir~~~~~~~~~itPGI~~~~-~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~dP~~a 226 (238)
++-.++|+-.+|+.+..-+... .|=-++. .+.-|--|+++|.||++.| .|-++...+=++.+++...
T Consensus 201 i~i~akE~~~~k~~l~~i~a~~-Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~ 269 (275)
T KOG0840 201 IVIQAKELMRIKEYLNEIYAKH-TGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLV 269 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCHHH
T ss_conf 9998999999999999999976-39969999754032302799999881633455328831256630111
No 337
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=44.90 E-value=24 Score=16.13 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=38.8
Q ss_pred HCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC--CC--CHHHHHHHHHHCCCCEEEEE---
Q ss_conf 023553104666414777688765201210488765445421102443111--34--10344554420244035510---
Q gi|254780453|r 110 VRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIV--CS--PQEVRMVREIVGHNMVIVTP--- 182 (238)
Q Consensus 110 ~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV--~s--~~ei~~ir~~~~~~~~~itP--- 182 (238)
.-..++||++||.++ | =+|.-.+++ +.+++|++.|+.=+| |. ||..=.++++ +-||+.+|.
T Consensus 160 ~~~~~TKlVa~~HvS---N----VlGtvnP~~----ei~~~AH~~GA~vlvDGAQ~~pH~pvDv~~l-dcDFyvFSGHKm 227 (409)
T TIGR01979 160 LLTEKTKLVAITHVS---N----VLGTVNPVE----EIIKLAHQVGAKVLVDGAQAVPHMPVDVQAL-DCDFYVFSGHKM 227 (409)
T ss_pred HHHCCCEEEEEEEEE---C----CCCCCCCHH----HHHHHHHHCCCEEEEECCCCCCCCCCCHHHH-CCCEEEEECCHH
T ss_conf 832698299997420---2----203014878----9999986579769986255758989885655-787445610045
Q ss_pred ----CCCC
Q ss_conf ----1135
Q gi|254780453|r 183 ----GIRM 186 (238)
Q Consensus 183 ----GI~~ 186 (238)
|||.
T Consensus 228 yGPtGiGV 235 (409)
T TIGR01979 228 YGPTGIGV 235 (409)
T ss_pred HCCCCCEE
T ss_conf 25766301
No 338
>PRK08999 hypothetical protein; Provisional
Probab=44.57 E-value=19 Score=16.85 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC---HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC------
Q ss_conf 7877640424678987765215675089972460---4677776530235531046664147776887652012------
Q gi|254780453|r 67 FLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP---QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE------ 137 (238)
Q Consensus 67 f~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~------ 137 (238)
..+++-++.|-.....++++. +.--+.+-+... ....+..+.+-..+..++-+ =.-+++..++....-.
T Consensus 108 ~~~l~~~~fp~AN~~Ii~~l~-LP~~~~IT~~~~~~~~~~l~~l~~al~~G~~liQl-R~K~l~~~~~~~~a~~~~~lc~ 185 (312)
T PRK08999 108 PDELAVYPFPPANQPIVRALR-LPDRYLITPAAEHDLAELLAGLERALAAGIRLIQL-RAPQMPPAAYRDLAREAVGLCR 185 (312)
T ss_pred HHHCCCCCCCCCCHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHH
T ss_conf 533545899999869998503-58689832677547699999999886357849999-8788997999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf -10488765445421102443111341034455442-0244035510113578657984003698999965998999985
Q gi|254780453|r 138 -KDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREI-VGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 138 -~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ir~~-~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
....-++.....+|...+++|+--+..++..+.+. ++++.+ + |.+.++.. ....|-+.|+||+++|-
T Consensus 186 ~~~a~liiN~~~~~a~~~~adGVHL~~~~L~~~~~Rpl~~~~~-v-------gaScH~~~---e~~~A~~~g~Dyi~lsP 254 (312)
T PRK08999 186 RAGAQLLLNGDIALAEDLPADGVHLTSAQLAKLAARPLPAGRW-V-------AASCHNAE---ELAHAQQLGVDFAVLSP 254 (312)
T ss_pred HCCCEEEEECCHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCE-E-------EEECCCHH---HHHHHHHHCCCEEEECC
T ss_conf 7298899979889998579977977989976763277889988-9-------99629999---99999870899699815
Q ss_pred HH---CCCCCHHHHHHHHHHHHH
Q ss_conf 33---088888999999999866
Q gi|254780453|r 216 PI---VRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 216 ~I---~~a~dP~~aa~~i~~~i~ 235 (238)
=- +..+-|.--++.+.+..+
T Consensus 255 V~~T~shp~~~~lGw~~f~~l~~ 277 (312)
T PRK08999 255 VQPTASHPGAPPLGWDGFAALIA 277 (312)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 44647899999678999999997
No 339
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=44.37 E-value=25 Score=16.08 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=13.1
Q ss_pred CCCCCCCEECCHHHHHH-------CCCCEEEECC
Q ss_conf 65798400369899996-------5998999985
Q gi|254780453|r 189 SATDGQKRFATPETALK-------YGASHIVVSR 215 (238)
Q Consensus 189 ~~~~dq~r~~tp~~Ai~-------~GaD~iVVGR 215 (238)
+...=|..+.+.++|+. .|||++.|=-
T Consensus 214 dr~tYQmd~~n~~eA~re~~~D~~EGAD~lMVKP 247 (321)
T PRK09283 214 DRKTYQMDPANRREALREVELDIEEGADMVMVKP 247 (321)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 7003315988779999999853760998798626
No 340
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=44.32 E-value=25 Score=16.07 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 24678987765215675089972
Q gi|254780453|r 75 IGSSVTAAIEHIANMGVAMLTVH 97 (238)
Q Consensus 75 IpnTv~~~v~~~~~~g~d~iTvH 97 (238)
=|.+...+++.+.++|+|.+.+.
T Consensus 64 dp~~~~~aa~~~~~~g~d~IDlN 86 (309)
T pfam01207 64 DPALLAEAAKLVADLGADIIDIN 86 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999886399989651
No 341
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=44.27 E-value=25 Score=16.07 Aligned_cols=172 Identities=21% Similarity=0.308 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHCC-CCCEEEECHHHHHCCCHHHHHHHHH-HCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE-
Q ss_conf 7998999999997388-5228998689984255899999985-154667877640424678987765215675089972-
Q gi|254780453|r 21 LPTVKEAERIVSILSD-TVSFYKIGYHLSFSGGLELARDLIS-DGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH- 97 (238)
Q Consensus 21 ~~~~~e~l~l~~~l~~-~i~~iKig~~l~~~~G~~~i~~l~k-~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH- 97 (238)
..+.++-+++++.|.. -++.+++|+|-......++++.+.. .+. |..-+..--.--+...++++.+.+.+.+.+-
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 5788999999999997699879972786885469999999874686--32202233178677559999757999899997
Q ss_pred -CCC------------H---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf -460------------4---6777765302355310466641477768876520121048876544542110244311--
Q gi|254780453|r 98 -AYP------------Q---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI-- 159 (238)
Q Consensus 98 -~~~------------~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv-- 159 (238)
+++ + +...+++.+++.+..+.. +.++.. ..-.+.+....+.+...|++=+
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~~a~~~g~~~~~-------~~Ed~~-----rt~~e~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF-------SAEDAT-----RTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE-------EEECCC-----CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 47889999884899999999999999999973975898-------753133-----679999999999999719949997
Q ss_pred -----CCCCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf -----134103----44554420244035510113578657984003698999965998999
Q gi|254780453|r 160 -----VCSPQE----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 160 -----V~s~~e----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
++.|++ ++.+++.+++ ... =++..- ++ -+.=+..-..|+++|||++=
T Consensus 166 ~DTvG~~~P~~~~~~i~~l~~~v~~-~~~--i~~H~H-ND--~G~AvANslaAv~aGa~~v~ 221 (409)
T COG0119 166 PDTVGVATPNEVADIIEALKANVPN-KVI--LSVHCH-ND--LGMAVANSLAAVEAGADQVE 221 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC-CCE--EEEEEC-CC--CCHHHHHHHHHHHCCCCEEE
T ss_conf 7876865879999999999983788-873--889836-98--56599999999984883899
No 342
>pfam12176 MtaB Methanol-cobalamin methyltransferase B subunit. This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 460 amino acids in length. MtaB folds as a TIM barrel and contains a novel zinc-binding motif. Zinc(II) lies at the bottom of a funnel formed at the C-terminal beta-barrel end and ligates to two cysteinyl sulfurs (Cys-220 and Cys-269) and one carboxylate oxygen (Glu-164). The function of this protein is to catalyse the cleavage of the C O bond in methanol by an SN2 mechanism. It complexes with MtaA and MtaC to perform this function.
Probab=44.01 E-value=25 Score=16.04 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=27.9
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 78776404246789877652156750899724604
Q gi|254780453|r 67 FLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQ 101 (238)
Q Consensus 67 f~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~ 101 (238)
|++++-.|--+++..+.+..++.|+|++.|.+.+|
T Consensus 134 ~~~lR~gd~~~~~~EsFE~cA~nGAd~lsiES~GG 168 (460)
T pfam12176 134 FLGLRRGDKYSVMLESFEACAENGADILSIESMGG 168 (460)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 34304422899999999999865887798862688
No 343
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=43.48 E-value=26 Score=15.99 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=39.4
Q ss_pred EEEEEECCC-----HHHHHHHHHHHCC--CCCEEEECHHHHHCCCHHHHHHHHH-HCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 899960799-----8999999997388--5228998689984255899999985-1546678776404246789877652
Q gi|254780453|r 15 LVVGLDLPT-----VKEAERIVSILSD--TVSFYKIGYHLSFSGGLELARDLIS-DGKSVFLDMKLFDIGSSVTAAIEHI 86 (238)
Q Consensus 15 livALD~~~-----~~e~l~l~~~l~~--~i~~iKig~~l~~~~G~~~i~~l~k-~~~~If~D~K~~DIpnTv~~~v~~~ 86 (238)
=+|.|++.| +++.|+++.+... |-.|++.|++.... +.++.|.+ |++.-|. .++..+
T Consensus 110 ~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~---~TL~~INRgHd~~~y~------------~a~~~~ 174 (307)
T TIGR01212 110 DVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHD---RTLKKINRGHDFACYV------------DAVKRA 174 (307)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHH---HHHHHHCCCCCHHHHH------------HHHHHH
T ss_conf 8057753688987747899999999549758999605356558---9999851437878999------------999999
Q ss_pred CCCCCEEEE
Q ss_conf 156750899
Q gi|254780453|r 87 ANMGVAMLT 95 (238)
Q Consensus 87 ~~~g~d~iT 95 (238)
.+.|+..++
T Consensus 175 ~krGikVC~ 183 (307)
T TIGR01212 175 RKRGIKVCS 183 (307)
T ss_pred HHCCCEEEE
T ss_conf 765988999
No 344
>pfam01747 ATP-sulfurylase ATP-sulfurylase. This family consists of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase pfam01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate.
Probab=43.40 E-value=15 Score=17.53 Aligned_cols=25 Identities=40% Similarity=0.719 Sum_probs=18.4
Q ss_pred CCEECCHHHHHH-------CCCCEEEECCHHC
Q ss_conf 400369899996-------5998999985330
Q gi|254780453|r 194 QKRFATPETALK-------YGASHIVVSRPIV 218 (238)
Q Consensus 194 q~r~~tp~~Ai~-------~GaD~iVVGR~I~ 218 (238)
-.|+..|+||+- .|++..||||-=.
T Consensus 190 ~mryAGPrEallhAiirkN~GcthfivGrdHA 221 (310)
T pfam01747 190 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHA 221 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 40226717889999999976997265566557
No 345
>PRK09206 pyruvate kinase; Provisional
Probab=42.84 E-value=26 Score=15.93 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHCCCC----CCCCCCHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 421102443----11134103445544202----4403551011357865798400369899996599899998533088
Q gi|254780453|r 149 VQARDIGMG----GIVCSPQEVRMVREIVG----HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 149 ~~a~~~g~~----GvV~s~~ei~~ir~~~~----~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
..+.+.|+| .||-|+.++..+|+.+. ++..+++ =| .-+.=+..-. .|-.-+|.+.|.|+=..-
T Consensus 179 ~f~~~~~vD~IalSFVrsa~DV~~lr~~l~~~~~~~~~IIA-KI-------E~~~av~Nld-eIi~~sDgIMIARGDLgv 249 (470)
T PRK09206 179 IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIIS-KI-------ENQEGLNNFD-EILEASDGIMVARGDLGV 249 (470)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-EE-------CCHHHHHHHH-HHHHHCCEEEEECCCCCC
T ss_conf 99998599999985879878899999999972699734999-84-------6888887399-999867799993586533
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 888999999999866
Q gi|254780453|r 221 ADPVSAAQEFQRAIS 235 (238)
Q Consensus 221 ~dP~~aa~~i~~~i~ 235 (238)
+=|.+..-.+|+.|-
T Consensus 250 ei~~e~vp~~Qk~II 264 (470)
T PRK09206 250 EIPVEEVIFAQKMMI 264 (470)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 168888589999999
No 346
>PRK02039 consensus
Probab=42.81 E-value=26 Score=15.93 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=14.5
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
Q ss_conf 1578988999607998999999997388522
Q gi|254780453|r 9 VDEKKRLVVGLDLPTVKEAERIVSILSDTVS 39 (238)
Q Consensus 9 ~~kk~~livALD~~~~~e~l~l~~~l~~~i~ 39 (238)
|.+++-.+++.- .+.+=+.++++.++-..+
T Consensus 1 m~~~~~~ifsgs-s~~~LA~~Ia~~Lg~~l~ 30 (316)
T PRK02039 1 MSHDGLMVFTGN-ANPALAQEVVKILGIPLG 30 (316)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHCCCCC
T ss_conf 987887999799-988999999999699731
No 347
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=42.21 E-value=27 Score=15.87 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=4.4
Q ss_pred HCCCCCCCCC
Q ss_conf 0244311134
Q gi|254780453|r 153 DIGMGGIVCS 162 (238)
Q Consensus 153 ~~g~~GvV~s 162 (238)
++|.+.+++.
T Consensus 158 ~aGA~f~iTQ 167 (274)
T cd00537 158 DAGADFIITQ 167 (274)
T ss_pred HHHHHHHHHH
T ss_conf 8142667864
No 348
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=41.90 E-value=23 Score=16.34 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=5.1
Q ss_pred HCCCCEEEECCH
Q ss_conf 659989999853
Q gi|254780453|r 205 KYGASHIVVSRP 216 (238)
Q Consensus 205 ~~GaD~iVVGR~ 216 (238)
..|||.+-+||+
T Consensus 293 aLGAD~v~~gt~ 304 (367)
T pfam01645 293 ALGADAVYIGTA 304 (367)
T ss_pred HHCCCHHHHHHH
T ss_conf 856535423479
No 349
>PRK01506 consensus
Probab=41.35 E-value=27 Score=15.87 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=16.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9889996079989999999973885228998
Q gi|254780453|r 13 KRLVVGLDLPTVKEAERIVSILSDTVSFYKI 43 (238)
Q Consensus 13 ~~livALD~~~~~e~l~l~~~l~~~i~~iKi 43 (238)
+..++++. .+.+=+.++++.++-...-+++
T Consensus 9 ~m~ifsgs-s~~~La~~iA~~Lg~~l~~~~~ 38 (317)
T PRK01506 9 NLKVFSLN-SNKELAEEIAKHIGVGLGKCSV 38 (317)
T ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCCCEEE
T ss_conf 75999799-9889999999986998321178
No 350
>PRK12999 pyruvate carboxylase; Reviewed
Probab=41.01 E-value=28 Score=15.75 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHH---CCCCCEEEECHHHHHC-CCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 989999999973---8852289986899842-55899999985154667877640424678987765215675089972
Q gi|254780453|r 23 TVKEAERIVSIL---SDTVSFYKIGYHLSFS-GGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH 97 (238)
Q Consensus 23 ~~~e~l~l~~~l---~~~i~~iKig~~l~~~-~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH 97 (238)
+++-.+++++++ +.++..+|=-.-|... ...++|+.|++. +.+-..+-.||..-.-...+.++.+.|+|++-+.
T Consensus 690 ~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~-~~lPIhlHtHdTsG~~~at~laA~eAGvDiVD~A 767 (1147)
T PRK12999 690 DLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEE-VDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 767 (1147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 69999999999997689889971445468879999999999861-6984598436788558999999998599989635
No 351
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=40.92 E-value=28 Score=15.74 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC----HHCCCCCHHH
Q ss_conf 44035510113578657984003698999965998999985----3308888899
Q gi|254780453|r 175 HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR----PIVRAADPVS 225 (238)
Q Consensus 175 ~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR----~I~~a~dP~~ 225 (238)
....++..|-+-++-.+| +....-|.+-+||.++.+- ++|. +||++
T Consensus 125 grVvIf~gGtg~P~fTTD----t~AALrA~ei~ad~ll~atn~VDGVY~-~DPkk 174 (238)
T COG0528 125 GRVVIFGGGTGNPGFTTD----TAAALRAEEIEADVLLKATNKVDGVYD-ADPKK 174 (238)
T ss_pred CCEEEEECCCCCCCCCHH----HHHHHHHHHHCCCEEEEECCCCCCEEC-CCCCC
T ss_conf 998999188899987347----999999998388689984067780368-99988
No 352
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family; InterPro: IPR011268 This entry describes a subset of the phosphorylase family. The entry excludes the methylthioadenosine phosphorylases (MTAP, IPR010044 from INTERPRO), which are believed to play a specific role in the recycling of methionine from methylthioadenosine. This entry consists of three clades of purine phosphorylases based on a neighbour-joining tree using the MTAP family as an out group. The highest-branching clade (IPR011269 from INTERPRO) consists of a group of sequences from both Gram-positive and Gram-negative bacteria which have been shown to act as purine nucleotide phosphorylases but whose physiological substrate and role in vivo remain unknown . Of the two remaining clades, one is xanthosine phosphorylase (XAPA, IPR010943 from INTERPRO); it is limited to certain gammaproteobacteria and constitutes a special purine phosphorylase found in a specialised operon for xanthosine catabolism . The enzyme also acts on the same purines (inosine and guanosine) as the other characterised members of this subfamily, but is only induced when xanthosine must be degraded. The remaining and largest clade consists of purine nucleotide phosphorylases (PNPH, IPR011270 from INTERPRO) from metazoa and bacteria which act primarily on guanosine and inosine, and do not act on adenosine. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterised with respect to substrate range. ; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=40.81 E-value=25 Score=16.04 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=38.5
Q ss_pred HHHCCHHHHHHH---------------HHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHH
Q ss_conf 764042467898---------------776521567508997246046777765302355310466641477768
Q gi|254780453|r 70 MKLFDIGSSVTA---------------AIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDF 129 (238)
Q Consensus 70 ~K~~DIpnTv~~---------------~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~ 129 (238)
.+-.|+|+|+.. .++.+..+|+|.+=-...||+ -.+|..+++++|||+.|.+...
T Consensus 160 A~~~~~~~~l~EGVYv~~~GP~YETPAE~rm~~~lGAD~VGMSTVPEV-----i~ARhcG~~V~a~S~vTN~a~G 229 (266)
T TIGR01697 160 AKELGVPRLLKEGVYVMVSGPSYETPAEIRMLRILGADAVGMSTVPEV-----IVARHCGIKVLAVSLVTNLAAG 229 (266)
T ss_pred HHHCCCCCEEECCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCHHH-----HHHHHCCCEEEEEEEEECCCCE
T ss_conf 985689825652688850865952678999999848948705456156-----8653369477666765021140
No 353
>pfam08981 consensus
Probab=40.62 E-value=28 Score=15.71 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf 46789877652156750899724-604677776530235531046664147776
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHA-YPQTMRSAVSVVRDTGICLLAVTVLTSMDD 128 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~-~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~ 128 (238)
-.|..-+++.+.++|+..+-|-+ ++++...+.+..++.+.+|+.||.-.-+..
T Consensus 11 ~~tl~~a~~ra~e~gI~~iVvASssG~TA~k~~e~~~~~~~~lvvVth~~GF~~ 64 (181)
T pfam08981 11 EDTLELAAERAKELGIKHIVVASSSGETALKAAEALEGTNLNVVVVTHHAGFSE 64 (181)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 999999999999769976999807877999999871358955999946457789
No 354
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.61 E-value=28 Score=15.71 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=12.4
Q ss_pred CCCCCEEEEEECCC---HHHHHHHHHHH
Q ss_conf 57898899960799---89999999973
Q gi|254780453|r 10 DEKKRLVVGLDLPT---VKEAERIVSIL 34 (238)
Q Consensus 10 ~kk~~livALD~~~---~~e~l~l~~~l 34 (238)
.+++.+.||+|+-- .+++..+++++
T Consensus 127 ~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 127 KGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 4994589850567868999999999860
No 355
>PRK01203 prefoldin subunit alpha; Provisional
Probab=40.52 E-value=23 Score=16.23 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHHCCCCEEE-ECCHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9965998999-9853308888899999999986651
Q gi|254780453|r 203 ALKYGASHIV-VSRPIVRAADPVSAAQEFQRAISLI 237 (238)
Q Consensus 203 Ai~~GaD~iV-VGR~I~~a~dP~~aa~~i~~~i~~~ 237 (238)
.++.-.|+|| ||.+++=+++...+.+++.+.++.+
T Consensus 64 ~lk~d~~lIvpIGSGV~I~e~~e~aierl~~nl~dL 99 (130)
T PRK01203 64 NIKKDKDLIVPIGSGVYIAEERERTIERLKENLEDL 99 (130)
T ss_pred CCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf 026775368973773454024778999999999999
No 356
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=40.12 E-value=29 Score=15.66 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=76.0
Q ss_pred HHHHHHHHH-HHCCCCCEEEEEECCC----------------------HHHHHHHHHHCCCCCCEEEEEEE--CCCCHHH
Q ss_conf 467898776-5215675089972460----------------------46777765302355310466641--4777688
Q gi|254780453|r 76 GSSVTAAIE-HIANMGVAMLTVHAYP----------------------QTMRSAVSVVRDTGICLLAVTVL--TSMDDFD 130 (238)
Q Consensus 76 pnTv~~~v~-~~~~~g~d~iTvH~~~----------------------~~l~~~~~~~~~~~~~il~Vt~L--TS~~~~~ 130 (238)
|.|++.+.+ -..+.++|++=+...+ .++++.+++.....+ =||+= +-||+..
T Consensus 82 P~~~aeAAk~i~~~~ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv~~vV~AV~~~~i---PVTVK~R~GWD~~h 158 (336)
T TIGR00737 82 PDTMAEAAKLINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDAQDI---PVTVKIRIGWDDAH 158 (336)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CEEEEEECCCCCCC
T ss_conf 268999999985305898885367654884216763543235868999999999987518766---51665515636244
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC------------CCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE
Q ss_conf 7652012104887654454211024431113------------4103-44554420244035510113578657984003
Q gi|254780453|r 131 LRESGYEKDISDMVRMRAVQARDIGMGGIVC------------SPQE-VRMVREIVGHNMVIVTPGIRMLGSATDGQKRF 197 (238)
Q Consensus 131 l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~------------s~~e-i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~ 197 (238)
. .+.+.++.+.++|+.-+-. +-+| |+.+|..+...--+ |=|+ ++| +
T Consensus 159 ~-----------n~~~~a~~a~~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~vKq~v~~~Gei--PVig--NGD------i 217 (336)
T TIGR00737 159 I-----------NAVEAARIAEDAGAQAVTLHGRTRAQGYEGEANWDIIARVKQAVRKEGEI--PVIG--NGD------I 217 (336)
T ss_pred C-----------CHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC--CEEC--CCC------C
T ss_conf 8-----------88999999987240002111000001578876068999999997168753--3222--774------2
Q ss_pred CCHHHHH----HCCCCEEEECCHHCCCCCHHHHHHHHHH
Q ss_conf 6989999----6599899998533088888999999999
Q gi|254780453|r 198 ATPETAL----KYGASHIVVSRPIVRAADPVSAAQEFQR 232 (238)
Q Consensus 198 ~tp~~Ai----~~GaD~iVVGR~I~~a~dP~~aa~~i~~ 232 (238)
-+|++|. ..|||-+.|||+-+..+=.....+.|.+
T Consensus 218 ~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~i~~yL~ 256 (336)
T TIGR00737 218 FSPEDAKAMLETTGADGVMIGRGALGNPWLFKQIEQYLT 256 (336)
T ss_pred CCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHH
T ss_conf 467899999863788689850022278758999999972
No 357
>TIGR02967 guan_deamin guanine deaminase; InterPro: IPR014311 This entry describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as more distantly related homologs which are not included in this entry. .
Probab=39.87 E-value=29 Score=15.64 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=65.0
Q ss_pred HHHHH-CCCHHHHHHHHHHCHHHHHHHHHCCHHH--HH-HHHHHHHCCCC----CEEEEEECC-CHHHHHHHHHHCCCCC
Q ss_conf 89984-2558999999851546678776404246--78-98776521567----508997246-0467777653023553
Q gi|254780453|r 45 YHLSF-SGGLELARDLISDGKSVFLDMKLFDIGS--SV-TAAIEHIANMG----VAMLTVHAY-PQTMRSAVSVVRDTGI 115 (238)
Q Consensus 45 ~~l~~-~~G~~~i~~l~k~~~~If~D~K~~DIpn--Tv-~~~v~~~~~~g----~d~iTvH~~-~~~l~~~~~~~~~~~~ 115 (238)
++.+- ++|..+++||.++-||. -.||.|... -| ..-+..+-..| +-|-|||.. -+.+-++.+ +.+.
T Consensus 65 ~~~ia~s~g~~LL~WLe~YTFP~--E~rF~D~~~A~~vA~~Fl~eLLrnGTTTA~vf~TVH~~SvdaLF~~a~---~~~~ 139 (426)
T TIGR02967 65 TEMIASSYGEQLLEWLEKYTFPT--EARFADPAHAEEVAEFFLDELLRNGTTTALVFGTVHPESVDALFEAAE---KRGM 139 (426)
T ss_pred HHHHHCCCCCCHHHHHHCCCCHH--HHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHH---HCCC
T ss_conf 47896024852155541375302--031268789999999999998516964773310002889999999998---7089
Q ss_pred -CEEEEEEEC-CCCHHHH---HHHHCCCCHHHHHHHHHHHHHH-CC-CCC-CC-------CCCHHHHHHHHHHCCCCEEE
Q ss_conf -104666414-7776887---6520121048876544542110-24-431-11-------34103445544202440355
Q gi|254780453|r 116 -CLLAVTVLT-SMDDFDL---RESGYEKDISDMVRMRAVQARD-IG-MGG-IV-------CSPQEVRMVREIVGHNMVIV 180 (238)
Q Consensus 116 -~il~Vt~LT-S~~~~~l---~~~g~~~~~~~~v~~~a~~a~~-~g-~~G-vV-------~s~~ei~~ir~~~~~~~~~i 180 (238)
.|.|-..|- -.-.+.| .+.+|..+ +.+....+. -| --. .| |||.-+..+.++..+
T Consensus 140 R~i~GKV~MDlRnaP~~L~DT~e~gy~~s-----~~LI~~WhgLkGnR~~YavTPRFAPTSs~eQL~~aG~L~~e----- 209 (426)
T TIGR02967 140 RMIAGKVLMDLRNAPDYLRDTAESGYDES-----KALIERWHGLKGNRLLYAVTPRFAPTSSPEQLAAAGELLKE----- 209 (426)
T ss_pred EEEECCHHCCCCCCCHHHCCCHHHHHHHH-----HHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHH-----
T ss_conf 07871013153567642328888888999-----99999987420563673354667767868899999999975-----
Q ss_pred EECCCCCC
Q ss_conf 10113578
Q gi|254780453|r 181 TPGIRMLG 188 (238)
Q Consensus 181 tPGI~~~~ 188 (238)
=|++=.|.
T Consensus 210 ~Pd~~~QT 217 (426)
T TIGR02967 210 YPDVYVQT 217 (426)
T ss_pred CCCCEEEC
T ss_conf 89817981
No 358
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.49 E-value=29 Score=15.60 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7898776521567508997246
Q gi|254780453|r 78 SVTAAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 78 Tv~~~v~~~~~~g~d~iTvH~~ 99 (238)
.....++.=.+-|+||+|||+.
T Consensus 145 ~~f~~ie~qa~~GVDfmTiH~G 166 (433)
T PRK13352 145 DLFDVIEKQAKDGVDFMTIHCG 166 (433)
T ss_pred HHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999999718987996202
No 359
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=39.49 E-value=29 Score=15.60 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 8765445421102443111
Q gi|254780453|r 142 DMVRMRAVQARDIGMGGIV 160 (238)
Q Consensus 142 ~~v~~~a~~a~~~g~~GvV 160 (238)
+.+.+.+++..+.|++-+|
T Consensus 148 eSAl~~~~~~e~~~f~~iv 166 (345)
T pfam04551 148 ESALEHVRILEELGFDDIV 166 (345)
T ss_pred HHHHHHHHHHHHCCCCCEE
T ss_conf 9999999999878998689
No 360
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=38.44 E-value=30 Score=15.49 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC-CCHH
Q ss_conf 551011357865798400369899996599899998533088-8889
Q gi|254780453|r 179 IVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA-ADPV 224 (238)
Q Consensus 179 ~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-~dP~ 224 (238)
+--.|||-.|+ .-.|+.+|||.+-+|+-.-.. +.|.
T Consensus 356 iADGGi~~sGD----------i~KAlaaGA~~VMlGsllAGt~EsPG 392 (497)
T PRK07107 356 CSDGGIVHDYH----------MTLALAMGADFIMLGRYFARFDESPT 392 (497)
T ss_pred ECCCCCCCCCH----------HHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 71787565545----------99998538988998811057778997
No 361
>PRK01999 consensus
Probab=38.42 E-value=27 Score=15.87 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=8.2
Q ss_pred HCCCCEEEECCHHCC
Q ss_conf 659989999853308
Q gi|254780453|r 205 KYGASHIVVSRPIVR 219 (238)
Q Consensus 205 ~~GaD~iVVGR~I~~ 219 (238)
+.|.+-+|+--+|-.
T Consensus 262 ~s~i~~iv~TdTip~ 276 (311)
T PRK01999 262 NSKLTEMIFTDSIPY 276 (311)
T ss_pred HCCCCEEEECCCCCC
T ss_conf 489988998378558
No 362
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=38.40 E-value=31 Score=15.49 Aligned_cols=47 Identities=26% Similarity=0.217 Sum_probs=36.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC----HHCCCCCHHH
Q ss_conf 244035510113578657984003698999965998999985----3308888899
Q gi|254780453|r 174 GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR----PIVRAADPVS 225 (238)
Q Consensus 174 ~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR----~I~~a~dP~~ 225 (238)
.....+++.|.|-|--.+| ++..--|++-+||.+.+|- ++|. +||+.
T Consensus 123 ~g~vVIF~gGtGnPfFTTD----taA~LRAiEi~aD~~Lkgt~GVDGVY~-~DPkk 173 (236)
T TIGR02075 123 KGKVVIFSGGTGNPFFTTD----TAAALRAIEINADVILKGTNGVDGVYT-ADPKK 173 (236)
T ss_pred CCCEEEEECCCCCCCCHHH----HHHHHHHHHHCCEEEEEECCCCCCCCC-CCCCC
T ss_conf 5978999558986963211----588876664313479981048880235-87885
No 363
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=37.17 E-value=19 Score=16.86 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=12.0
Q ss_pred HHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1024431113410344554420
Q gi|254780453|r 152 RDIGMGGIVCSPQEVRMVREIV 173 (238)
Q Consensus 152 ~~~g~~GvV~s~~ei~~ir~~~ 173 (238)
..+|++||+..|-.-+.+...+
T Consensus 861 ~~aGF~G~laKPl~~~~L~~~l 882 (1052)
T TIGR02956 861 LAAGFDGFLAKPLVEEQLVAML 882 (1052)
T ss_pred HHHHCCCCCCCCCCHHHHHHHH
T ss_conf 7530266347998778899999
No 364
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=37.12 E-value=32 Score=15.36 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHCCCCCCCCCC
Q ss_conf 102443111341
Q gi|254780453|r 152 RDIGMGGIVCSP 163 (238)
Q Consensus 152 ~~~g~~GvV~s~ 163 (238)
.++|++-+++.+
T Consensus 168 i~aGA~f~iTQ~ 179 (286)
T pfam02219 168 VDAGADFIITQL 179 (286)
T ss_pred HHCCCHHHHHHH
T ss_conf 984610536435
No 365
>PTZ00333 triosephosphate isomerase; Provisional
Probab=36.70 E-value=32 Score=15.32 Aligned_cols=196 Identities=13% Similarity=0.222 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEECC--CHHHHHHHHHHHCC-----CCCEEEECHHHHHCCCHHHHHHHHHHCHHHHH-HHHHCC-HHHHH
Q ss_conf 15789889996079--98999999997388-----52289986899842558999999851546678-776404-24678
Q gi|254780453|r 9 VDEKKRLVVGLDLP--TVKEAERIVSILSD-----TVSFYKIGYHLSFSGGLELARDLISDGKSVFL-DMKLFD-IGSSV 79 (238)
Q Consensus 9 ~~kk~~livALD~~--~~~e~l~l~~~l~~-----~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~-D~K~~D-IpnTv 79 (238)
|..|+++++|-=-. +.+++.++++.+.. .+..+ +-.|+.+- ....+.++...+.+-. |.=..+ =+.|-
T Consensus 2 m~~rk~iIi~NWKMn~~~~~~~~~~~~~~~~~~~~~~~v~-i~Pp~~~l--~~~~~~~~~~~i~igaQn~~~~~~Ga~TG 78 (252)
T PTZ00333 2 MKKRKKFVGGNWKCNGSKASISELIDSFNKLKFDNNVDVV-VSPSSLHI--PMVLQKLKNNKFAVGAQNVSSAGSGAFTG 78 (252)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE-EECCHHHH--HHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 9889728999822379999999999998725678998699-97999999--99999816898467310134467878767
Q ss_pred HHHHHHHCCCCCEEEEE-EC-----CCH---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC-CCHHHHHHHHHH
Q ss_conf 98776521567508997-24-----604---677776530235531046664147776887652012-104887654454
Q gi|254780453|r 80 TAAIEHIANMGVAMLTV-HA-----YPQ---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE-KDISDMVRMRAV 149 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTv-H~-----~~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~-~~~~~~v~~~a~ 149 (238)
+-....+.+.|++++.| |+ +++ .+..-+..+.+.+...+ +++=-++. -.+.+.. ..+..+......
T Consensus 79 eiSa~mL~d~g~~yviiGHSERR~~f~Etd~~i~~K~~~al~~~l~pI-lCIGE~~~---er~~g~~~~vl~~Ql~~~~~ 154 (252)
T PTZ00333 79 EISAEMLKDLGIEWVIIGHSERRQYFGETDEIVAQKVKNALNNGLKVI-LCIGETLQ---EREAGQTSAVLLTQLKAIAK 154 (252)
T ss_pred CCCHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-EEECCCHH---HHHCCCHHHHHHHHHHHHHC
T ss_conf 689999998699989977589898729987999999999998599799-99377599---88646779999999999873
Q ss_pred ----------HHHH----CCCCCCCCCCHHHH----HHHHHHCCCCE-EEEECCCC-CCCCCCCCCEECCHHHHH----H
Q ss_conf ----------2110----24431113410344----55442024403-55101135-786579840036989999----6
Q gi|254780453|r 150 ----------QARD----IGMGGIVCSPQEVR----MVREIVGHNMV-IVTPGIRM-LGSATDGQKRFATPETAL----K 205 (238)
Q Consensus 150 ----------~a~~----~g~~GvV~s~~ei~----~ir~~~~~~~~-~itPGI~~-~~~~~~dq~r~~tp~~Ai----~ 205 (238)
+|-+ .| .|.+++|.++. .+|+.+.+.+- .....|+. -|++. +|..|- .
T Consensus 155 ~~~~~~~~iiIAYEPvWAIG-TG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYGGSV-------n~~Na~~i~~~ 226 (252)
T PTZ00333 155 KVKEDWDKVVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYGGSV-------NEKNCHELIKQ 226 (252)
T ss_pred CCHHHHHCEEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCC-------CHHHHHHHHCC
T ss_conf 14132324189966765358-89999999999999999999998718545067748872777-------99999999668
Q ss_pred CCCCEEEECCHHCC
Q ss_conf 59989999853308
Q gi|254780453|r 206 YGASHIVVSRPIVR 219 (238)
Q Consensus 206 ~GaD~iVVGR~I~~ 219 (238)
.+.|-+-||++=..
T Consensus 227 ~~vDG~LVGgASL~ 240 (252)
T PTZ00333 227 PDIDGFLVGGASLK 240 (252)
T ss_pred CCCCEEEECHHHCC
T ss_conf 89997896005379
No 366
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=36.65 E-value=32 Score=15.31 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=12.2
Q ss_pred CEECCHHHHHH-------CCCCEEEECCH
Q ss_conf 00369899996-------59989999853
Q gi|254780453|r 195 KRFATPETALK-------YGASHIVVSRP 216 (238)
Q Consensus 195 ~r~~tp~~Ai~-------~GaD~iVVGR~ 216 (238)
.|+..|+||+- .||.+.||||-
T Consensus 261 Mr~AGPREAl~HAiiRkNyGcTHfIVGRD 289 (568)
T PRK05537 261 MRMAGPREALWHGIIRRNYGCTHFIVGRD 289 (568)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 45468189999999886169863343367
No 367
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=36.52 E-value=33 Score=15.30 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHH-HCCCCCEEEECHHHHHCCC--HHHHHHHHHHCHHHHHHHHHCCHH----HHHHHHHHHHCCCCCEEE
Q ss_conf 998999999997-3885228998689984255--899999985154667877640424----678987765215675089
Q gi|254780453|r 22 PTVKEAERIVSI-LSDTVSFYKIGYHLSFSGG--LELARDLISDGKSVFLDMKLFDIG----SSVTAAIEHIANMGVAML 94 (238)
Q Consensus 22 ~~~~e~l~l~~~-l~~~i~~iKig~~l~~~~G--~~~i~~l~k~~~~If~D~K~~DIp----nTv~~~v~~~~~~g~d~i 94 (238)
.+.+++++-+++ +..-.+++-||-+.--... ...-+|+.+.. +++.-++-.++| .+-...++.+.+.|++++
T Consensus 16 ~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPga~~v~~~eE~~Rl~-pvl~~l~~~~~~iSIDT~~~~v~~~al~~G~~iI 94 (208)
T pfam00809 16 LSPDKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLV-PVLEALRDQDVPISIDTFNAEVAEAALKAGADII 94 (208)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCEE
T ss_conf 899999999999998799899868976899986468899999999-9999863579828997984999999998199389
Q ss_pred E-EECCCHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHH-HCCCCH-HH---HHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 9-7246046777765302355310466641477-76887652-012104-88---7654454211024431113410344
Q gi|254780453|r 95 T-VHAYPQTMRSAVSVVRDTGICLLAVTVLTSM-DDFDLRES-GYEKDI-SD---MVRMRAVQARDIGMGGIVCSPQEVR 167 (238)
Q Consensus 95 T-vH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~-~~~~l~~~-g~~~~~-~~---~v~~~a~~a~~~g~~GvV~s~~ei~ 167 (238)
+ |.++.. -.+..+...+++..+ .+|.+. ....+++. .|..++ .+ ...+....+.+.|+
T Consensus 95 NDvsg~~~-d~~~~~~~a~~~~~~---vlmh~~~~p~~~~~~~~~~~dv~~~i~~~~~~~i~~~~~~Gi----------- 159 (208)
T pfam00809 95 NDSSGGKD-DPEMAPLAAEYGAPV---VLMHMDGNPQGMQENPEYRVDVVEELLRFLTERLEAAEAAGV----------- 159 (208)
T ss_pred EECHHHHC-CHHHHHHHHHCCCCE---EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf 87012103-779999999739999---986689998653326765306999999999999999998798-----------
Q ss_pred HHHHHHCCCCEEEEECCCC
Q ss_conf 5544202440355101135
Q gi|254780453|r 168 MVREIVGHNMVIVTPGIRM 186 (238)
Q Consensus 168 ~ir~~~~~~~~~itPGI~~ 186 (238)
..+-+++=||+++
T Consensus 160 ------~~~~IiiDPGiGF 172 (208)
T pfam00809 160 ------PPERIILDPGIGF 172 (208)
T ss_pred ------CHHHEEECCCCCC
T ss_conf ------9777997188788
No 368
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=36.48 E-value=26 Score=15.95 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCEEEECHH------HHHC-CCHHHHHHHHHHC-HHHHHH
Q ss_conf 85228998689------9842-5589999998515-466787
Q gi|254780453|r 36 DTVSFYKIGYH------LSFS-GGLELARDLISDG-KSVFLD 69 (238)
Q Consensus 36 ~~i~~iKig~~------l~~~-~G~~~i~~l~k~~-~~If~D 69 (238)
+....+|+|+- ++.. +-..+++++++.+ .+.|.|
T Consensus 38 dd~vaVKvHfGE~Gn~~fIspv~~r~IVdkvkeagGkPfvtd 79 (354)
T COG2768 38 DDFVAVKVHFGERGNDDFISPVFVRAIVDKVKEAGGKPFVTD 79 (354)
T ss_pred CCEEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 755766763167776660056888999899986489845986
No 369
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.46 E-value=33 Score=15.30 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCCCCCCEEEEEE-CCCHHHHHHHHHHHCCCCCEEEECHH-------------------HHHCC-----CHH-HHHHHH
Q ss_conf 31157898899960-79989999999973885228998689-------------------98425-----589-999998
Q gi|254780453|r 7 IDVDEKKRLVVGLD-LPTVKEAERIVSILSDTVSFYKIGYH-------------------LSFSG-----GLE-LARDLI 60 (238)
Q Consensus 7 ~~~~kk~~livALD-~~~~~e~l~l~~~l~~~i~~iKig~~-------------------l~~~~-----G~~-~i~~l~ 60 (238)
.-+.-++++.+|-= +.+-.+..++++..+ ..++.+|+- ++.+. |.+ .+++++
T Consensus 5 ~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~g--~G~v~~~Tvt~~p~~Gn~~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~ 82 (296)
T cd04740 5 AGLRLKNPVILASGTFGFGEELSRVADLGK--LGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred CCEECCCCCEECCCCCCCCHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 988579987878678998399999988589--638993804703145899981781541167652378886489998789
Q ss_pred HH----CHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC--------------HHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 51----54667877640424678987765215675089972460--------------4677776530235531046664
Q gi|254780453|r 61 SD----GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP--------------QTMRSAVSVVRDTGICLLAVTV 122 (238)
Q Consensus 61 k~----~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~--------------~~l~~~~~~~~~~~~~il~Vt~ 122 (238)
+. +.+++.-.- .+-+.--...++.+.+.++|++++..++ +.+.+.++..++.-..-+.| -
T Consensus 83 ~~~~~~~~pvi~si~-~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~v-K 160 (296)
T cd04740 83 PWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV-K 160 (296)
T ss_pred HHHCCCCCEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEE-E
T ss_conf 863568971899816-89878999999998864898899978899867636775749999999999998604896699-7
Q ss_pred ECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH------H---------------------------HHHH
Q ss_conf 147776887652012104887654454211024431113410------3---------------------------4455
Q gi|254780453|r 123 LTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ------E---------------------------VRMV 169 (238)
Q Consensus 123 LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~------e---------------------------i~~i 169 (238)
|+. +-. + +..+++.+.+.|++|+|++-. + ++++
T Consensus 161 lsP-~~~------------~-i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~v~~~ 226 (296)
T cd04740 161 LTP-NVT------------D-IVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQV 226 (296)
T ss_pred CCC-CCC------------H-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 189-800------------0-99999999976998899974678766364446755245578768677889999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEECCHH---HHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 44202440355101135786579840036989---99965998999985330888889999999998665
Q gi|254780453|r 170 REIVGHNMVIVTPGIRMLGSATDGQKRFATPE---TALKYGASHIVVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 170 r~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~---~Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
++.. +-.++=+.|| .|++ +.+.+|||.+=|+.++|+ .|. .+.++.++|..
T Consensus 227 ~~~~-~ipIig~GGI-------------~s~~da~e~i~aGAs~VQi~Tai~~--Gp~-~i~~i~~~L~~ 279 (296)
T cd04740 227 YKAV-EIPIIGVGGI-------------ASGEDALEFLMAGASAVQVGTANFV--DPE-AFKEIIEGLEA 279 (296)
T ss_pred HHHC-CCCEEEECCC-------------CCHHHHHHHHHCCCCHHHHHHHHHC--CHH-HHHHHHHHHHH
T ss_conf 8545-8887975797-------------9999999999839988872366742--927-99999999999
No 370
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1); InterPro: IPR000977 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination ,. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold , . ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006260 DNA replication, 0006281 DNA repair, 0006310 DNA recombination.
Probab=36.41 E-value=29 Score=15.62 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCCCEECCHHHHHHCCCCEEEECCH
Q ss_conf 7654454211024431113410344554420244035510113578---6579840036989999659989999853
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLG---SATDGQKRFATPETALKYGASHIVVSRP 216 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~s~~ei~~ir~~~~~~~~~itPGI~~~~---~~~~dq~r~~tp~~Ai~~GaD~iVVGR~ 216 (238)
-+.++.+.|-+.|+.|+|+ |.. .++--+..||.|-.. -+-+. .+++-.-.|.+||||.
T Consensus 396 e~~~~l~~ai~~g~EGlm~--------K~~-~p~~~~Y~pg~R~~~w~K~K~~Y-------~~~~~d~LDLvV~G~~ 456 (705)
T TIGR00574 396 ELEKFLNEAISEGCEGLMV--------KDL-EPDEAIYEPGKRGWLWLKFKPDY-------LEGMGDTLDLVVIGKD 456 (705)
T ss_pred HHHHHHHHHHHCCCCEEEE--------CCC-CCCCCCCCCCCCCCCCEEEECCC-------CCCCCCEEEEEEECCC
T ss_conf 9999999999638973897--------046-87986314777788750330023-------6656751016888677
No 371
>PRK06247 pyruvate kinase; Provisional
Probab=36.11 E-value=33 Score=15.26 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=47.1
Q ss_pred HHHHHHHCCCCC----CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCC
Q ss_conf 454211024431----1134103445544202440355101135786579840036989999659989999853308888
Q gi|254780453|r 147 RAVQARDIGMGG----IVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAAD 222 (238)
Q Consensus 147 ~a~~a~~~g~~G----vV~s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~d 222 (238)
....+.+.|+|. ||-++.++..+|+.+++...+++ =|-- +.=+..-. .|-.-+|.+.|-|+=..-+=
T Consensus 178 di~~a~~~~vD~ialSFVrsa~DV~~vr~~l~~~~~IIa-KIE~-------~~av~Nld-eIi~~sDgIMVARGDLgvEi 248 (477)
T PRK06247 178 DLEFALELGVDWVALSFVQRPEDVEEVRKVIGGRVPVMA-KIEK-------PQAVDRLE-AIVEASDAIMVARGDLGVEV 248 (477)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEE-EECC-------HHHHHHHH-HHHHHHCEEEEECCCCCCCC
T ss_conf 999899759999997576987899999986587650899-9638-------87877489-99986177899658654557
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999866
Q gi|254780453|r 223 PVSAAQEFQRAIS 235 (238)
Q Consensus 223 P~~aa~~i~~~i~ 235 (238)
|.+..-.+|+.|-
T Consensus 249 ~~e~vp~~Qk~ii 261 (477)
T PRK06247 249 PLESVPLIQKRII 261 (477)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9889799999999
No 372
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.95 E-value=33 Score=15.24 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHH-CCCCEEEECCHHC
Q ss_conf 455442024403551011357865798400369899996-5998999985330
Q gi|254780453|r 167 RMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALK-YGASHIVVSRPIV 218 (238)
Q Consensus 167 ~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~-~GaD~iVVGR~I~ 218 (238)
+.+|+. .++..++..|..+. ..|++.++ .++||+|+|-+=.
T Consensus 60 ~~~k~~-~p~~~iv~GG~h~t----------~~p~~~l~~~~~D~vv~GEGE~ 101 (127)
T cd02068 60 KIAKEV-LPNVIVVVGGPHAT----------FFPEEILEEPGVDFVVIGEGEE 101 (127)
T ss_pred HHHHHH-CCCCEEEECCCCCC----------CCHHHHHHCCCCCEEEECCHHH
T ss_conf 999997-89978998598745----------4999997075877899686899
No 373
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=35.71 E-value=25 Score=16.07 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCCCCCCCCH-----------H------HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCC
Q ss_conf 54454211024431113410-----------3------445544202440355101135786579840036989999659
Q gi|254780453|r 145 RMRAVQARDIGMGGIVCSPQ-----------E------VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYG 207 (238)
Q Consensus 145 ~~~a~~a~~~g~~GvV~s~~-----------e------i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~G 207 (238)
.+.+..+.+.|+|++||-+. + +.++++.+..=.++...||.- .. ....|+..|
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~d---g~-------~i~AAlalG 206 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIAD---GR-------GIAAALALG 206 (336)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC---HH-------HHHHHHHHC
T ss_conf 99999998179988994377677868998877318889999999854897898768688---69-------999999844
Q ss_pred CCEEEECCHHCC
Q ss_conf 989999853308
Q gi|254780453|r 208 ASHIVVSRPIVR 219 (238)
Q Consensus 208 aD~iVVGR~I~~ 219 (238)
||.+-+|-.-..
T Consensus 207 A~gVq~GT~Fl~ 218 (336)
T COG2070 207 ADGVQMGTRFLA 218 (336)
T ss_pred CHHHHHHHHHHC
T ss_conf 168554125421
No 374
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.65 E-value=34 Score=15.21 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC-CCHH
Q ss_conf 03551011357865798400369899996599899998533088-8889
Q gi|254780453|r 177 MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA-ADPV 224 (238)
Q Consensus 177 ~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-~dP~ 224 (238)
.++--.|||-.|+ .-.|+..|||++-+|+..-.. +.|.
T Consensus 199 ~iiaDGGi~~~Gd----------i~KAla~GAd~VMlG~~lAg~~EsPG 237 (325)
T cd00381 199 PVIADGGIRTSGD----------IVKALAAGADAVMLGSLLAGTDESPG 237 (325)
T ss_pred CEEECCCCCCHHH----------HHHHHHCCCCEEEECCHHCCCCCCCC
T ss_conf 5894487331078----------88887528878984621046666896
No 375
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=35.55 E-value=34 Score=15.20 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCCCCCCCHH-HHHHHHHHCC-----CCEEEEECCCCCCCCCCCCCEECCHHHHH-HCCCCEEEE
Q ss_conf 44311134103-4455442024-----40355101135786579840036989999-659989999
Q gi|254780453|r 155 GMGGIVCSPQE-VRMVREIVGH-----NMVIVTPGIRMLGSATDGQKRFATPETAL-KYGASHIVV 213 (238)
Q Consensus 155 g~~GvV~s~~e-i~~ir~~~~~-----~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~GaD~iVV 213 (238)
+--|+++|-.| ....++.|.. .+...+|..+... +.....+.+ ..|||.+|.
T Consensus 126 ~~lGVvvP~~eQ~~~~~~kW~~~~~~~~~~~asPy~~~~~-------~l~~Aa~~L~~~gadlivL 184 (221)
T pfam07302 126 HQLGVIVPLPEQISQQANKWQKLVKEVVVVAASPYHGSED-------RLEEAARELLDQGADLIVL 184 (221)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-------HHHHHHHHHHHCCCCEEEE
T ss_conf 8599995579999999998874588717997189889889-------9999999999759899999
No 376
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.44 E-value=34 Score=15.19 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=87.6
Q ss_pred CCCCCCEEEEE--ECCCHHHHHHHHHHHCCCCCEEEECHHHHHCCC-----HHHHHHHHHHC-HHHHHHHHHCCHHHHHH
Q ss_conf 15789889996--079989999999973885228998689984255-----89999998515-46678776404246789
Q gi|254780453|r 9 VDEKKRLVVGL--DLPTVKEAERIVSILSDTVSFYKIGYHLSFSGG-----LELARDLISDG-KSVFLDMKLFDIGSSVT 80 (238)
Q Consensus 9 ~~kk~~livAL--D~~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G-----~~~i~~l~k~~-~~If~D~K~~DIpnTv~ 80 (238)
.+-++++++|= +++|. -.-.+..+.+..+.. ++++...+ ......+.... ..++.=-=++-=|.++.
T Consensus 6 ~~~~~~l~lAPMagvtd~-~FR~l~~~~Ga~l~~----TEmv~a~~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a 80 (321)
T PRK10415 6 YQLRNRLIAAPMAGITDR-PFRTLCYEMGAGLTV----SEMMSSNPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMA 80 (321)
T ss_pred EECCCCEEECCCCCCCCH-HHHHHHHHHCCCEEE----ECCEEECHHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHH
T ss_conf 844898897357899489-999999998839999----875871277733848898630467889805997269999999
Q ss_pred HHHHHHCCCCCEEEEEECCCH------------H------HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHH
Q ss_conf 877652156750899724604------------6------7777653023553104666414777688765201210488
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYPQ------------T------MRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISD 142 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~~------------~------l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~ 142 (238)
.+++.+.+.|+|.+-+...+. . +.+.+++.++. .. +-||+=+- +|+... ..
T Consensus 81 ~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a-~~-iPVTvKiR--------lG~~~~-~~ 149 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VPVTLKIR--------TGWAPE-HR 149 (321)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHC-CC-CCEEEEEE--------CCCCCC-HH
T ss_conf 999988764999894318999899707983650633989999999999734-48-74699984--------688852-24
Q ss_pred HHHHHHHHHHHCCCCCCCCC-----------C-H-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH---H-
Q ss_conf 76544542110244311134-----------1-0-3445544202440355101135786579840036989999---6-
Q gi|254780453|r 143 MVRMRAVQARDIGMGGIVCS-----------P-Q-EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL---K- 205 (238)
Q Consensus 143 ~v~~~a~~a~~~g~~GvV~s-----------~-~-ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai---~- 205 (238)
....+++.+.++|++.+... + + .++.+++.++ .|=|+ +++ +.|+.+|. +
T Consensus 150 ~~~~~~~~~e~aG~~~itvHgRT~~q~y~g~adw~~i~~vk~~~~------iPvi~--NGD------I~~~~da~~~l~~ 215 (321)
T PRK10415 150 NCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS------IPVIA--NGD------ITDPLKARAVLDY 215 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHCCC------CCEEE--CCC------CCCHHHHHHHHHH
T ss_conf 399999999856988999972213443169987799999985479------97896--589------1999999999986
Q ss_pred CCCCEEEECCHHCCCCCHHHHHH
Q ss_conf 59989999853308888899999
Q gi|254780453|r 206 YGASHIVVSRPIVRAADPVSAAQ 228 (238)
Q Consensus 206 ~GaD~iVVGR~I~~a~dP~~aa~ 228 (238)
.|+|-+-+||+.+..+-.-..++
T Consensus 216 tg~dgvMigRgal~nPwiF~~i~ 238 (321)
T PRK10415 216 TGADALMIGRAAQGRPWIFREIQ 238 (321)
T ss_pred HCCCEEEECHHHHCCCHHHHHHH
T ss_conf 29999997566536987799999
No 377
>pfam01225 Mur_ligase Mur ligase family, catalytic domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=35.35 E-value=34 Score=15.18 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=33.6
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC---------HHCCCCCHHHHHHHHHH
Q ss_conf 4420244035510113578657984003698999965998999985---------33088888999999999
Q gi|254780453|r 170 REIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR---------PIVRAADPVSAAQEFQR 232 (238)
Q Consensus 170 r~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR---------~I~~a~dP~~aa~~i~~ 232 (238)
|++-..++++-.||-+..|.+- ..+|+++||-.+++-+ ++..-+|++++..++-.
T Consensus 10 r~v~~g~lF~a~~G~~~dG~~f--------i~~a~~~GA~ai~~~~~~~~~~~~~~~i~v~d~~~aL~~la~ 73 (76)
T pfam01225 10 RGMSPGALFLALKGYRVDGSDF--------AESAIALGAVAVVSSAIPRDPNPEVPGIPVIDRREALAELAA 73 (76)
T ss_pred CCCCCCCEEEECCCCCCCHHHH--------HHHHHHCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 7279999999807786799999--------999998099899993654567999739998999999999999
No 378
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.34 E-value=34 Score=15.18 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=14.3
Q ss_pred ECCHHH---HHHCCCCEEEECC
Q ss_conf 369899---9965998999985
Q gi|254780453|r 197 FATPET---ALKYGASHIVVSR 215 (238)
Q Consensus 197 ~~tp~~---Ai~~GaD~iVVGR 215 (238)
+.||.. |+-.|||||+-|.
T Consensus 228 IGTP~aaaAAF~mGA~yVvTGS 249 (418)
T cd04742 228 IGTPEAAAAAFALGADFIVTGS 249 (418)
T ss_pred CCCHHHHHHHHHCCCCEEEECC
T ss_conf 7987999999971774489555
No 379
>KOG1144 consensus
Probab=35.06 E-value=26 Score=15.92 Aligned_cols=13 Identities=8% Similarity=0.003 Sum_probs=6.0
Q ss_pred CCCCCEEEEEECC
Q ss_conf 5789889996079
Q gi|254780453|r 10 DEKKRLVVGLDLP 22 (238)
Q Consensus 10 ~kk~~livALD~~ 22 (238)
+-+++||+-|-.-
T Consensus 472 ~lRSPIcCilGHV 484 (1064)
T KOG1144 472 NLRSPICCILGHV 484 (1064)
T ss_pred HCCCCEEEEEECC
T ss_conf 2368637897111
No 380
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=34.94 E-value=35 Score=15.14 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=26.1
Q ss_pred EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC-CCHH
Q ss_conf 3551011357865798400369899996599899998533088-8889
Q gi|254780453|r 178 VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA-ADPV 224 (238)
Q Consensus 178 ~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-~dP~ 224 (238)
++--.|||-.|+ .-.|+..|||.+-+|++.-.. +.|.
T Consensus 259 IIADGGI~~sGD----------i~KAlA~GAdaVMlGs~lAgt~EaPG 296 (404)
T PRK06843 259 IIADGGIRFSGD----------VVKAIAAGADSVMIGNLFAGTKESPS 296 (404)
T ss_pred EEECCCCCCCCH----------HHHHHHCCCCEEEECCHHCCCCCCCC
T ss_conf 883687465327----------99999718988886713136766997
No 381
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=34.06 E-value=36 Score=15.05 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHC
Q ss_conf 35510113578657984003698999965998999985330
Q gi|254780453|r 178 VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIV 218 (238)
Q Consensus 178 ~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~ 218 (238)
++--.|||-.|+ .-.|+..|||.+-+|+..-
T Consensus 329 iIADGGi~~sGD----------i~KAlaaGAd~VMlGsllA 359 (467)
T pfam00478 329 VIADGGIRYSGD----------IAKALAAGASAVMLGSLLA 359 (467)
T ss_pred EEECCCCCCHHH----------HHHHHHCCCCEEEECHHHC
T ss_conf 994476233048----------9999872898898772225
No 382
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.80 E-value=36 Score=15.02 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHCCHHHHHHH------HHHHHCCCCCEEEEEECC----CHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHCCCC
Q ss_conf 64042467898------776521567508997246----046777765302355310466641477768-8765201210
Q gi|254780453|r 71 KLFDIGSSVTA------AIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDF-DLRESGYEKD 139 (238)
Q Consensus 71 K~~DIpnTv~~------~v~~~~~~g~d~iTvH~~----~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~-~l~~~g~~~~ 139 (238)
+-.++|=|+.+ .++.+.+.|+|-+.+... |..++.+.+...... -++++-.--..+++ ...--+....
T Consensus 71 ~~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i~~~~~~fG~q~-IvvsiD~k~~~~~~~~v~~~g~~~~ 149 (253)
T PRK01033 71 SECFMPLCYGGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLITEAAEIYGSQS-VVVSIDVKKRLFGRYDVYTHNGTKK 149 (253)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCC-EEEEEEEECCCCCCEEEEEECCCCC
T ss_conf 876998898688121688899986798669999878637416578998779976-9999998248778347898679536
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC---------CCHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHH-HC
Q ss_conf 4887654454211024431113---------4103---445544202440355101135786579840036989999-65
Q gi|254780453|r 140 ISDMVRMRAVQARDIGMGGIVC---------SPQE---VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETAL-KY 206 (238)
Q Consensus 140 ~~~~v~~~a~~a~~~g~~GvV~---------s~~e---i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai-~~ 206 (238)
....+...++...+.|+..+++ ++.+ ++.+++.. +-.++.+.||+-.. .-.+++ ..
T Consensus 150 t~~~~~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~~-~ipiIasGGi~s~~----------di~~l~~~~ 218 (253)
T PRK01033 150 TGLDPVEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISSAV-KIPVTALGGAGSLD----------DIADLIQEA 218 (253)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHHC
T ss_conf 7855899999987469779999878488976687999999999878-99999978989999----------999999867
Q ss_pred CCCEEEECCHH
Q ss_conf 99899998533
Q gi|254780453|r 207 GASHIVVSRPI 217 (238)
Q Consensus 207 GaD~iVVGR~I 217 (238)
|+|.+++|..-
T Consensus 219 ~v~gv~~gs~F 229 (253)
T PRK01033 219 GASAAAAGSLF 229 (253)
T ss_pred CCEEEEEEEEE
T ss_conf 97399783168
No 383
>PRK01132 consensus
Probab=33.31 E-value=29 Score=15.64 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=15.1
Q ss_pred HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 96599899998533088888999999999866
Q gi|254780453|r 204 LKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 204 i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
+..|+|-+|+--+|-+.-+-...+.-+-+.|+
T Consensus 251 i~~~~~~iv~TdTi~~~~s~isva~~ia~~l~ 282 (286)
T PRK01132 251 ILENADEIHVTDTVETKFSDISVYQDVCNYIE 282 (286)
T ss_pred HHHCCCEEEECCCCCCCCCEEEEHHHHHHHHH
T ss_conf 88069989991897798870466799999998
No 384
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.29 E-value=37 Score=14.97 Aligned_cols=33 Identities=3% Similarity=0.085 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 4667877640424678987765215675089972
Q gi|254780453|r 64 KSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVH 97 (238)
Q Consensus 64 ~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH 97 (238)
.+++.----..+..+++ ..+.+.+.|+|.+-+.
T Consensus 74 ~pvi~gv~~~st~~ai~-~a~~a~~~Gad~v~~~ 106 (294)
T PRK04147 74 IKLIAQVGSVNTAEAQE-LAKYATELGYDAISAV 106 (294)
T ss_pred CEEEECCCCCCHHHHHH-HHHHHHHCCCCEEEEC
T ss_conf 32763478888899999-9999997599889972
No 385
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=33.28 E-value=37 Score=14.97 Aligned_cols=96 Identities=14% Similarity=0.261 Sum_probs=46.8
Q ss_pred HHHHCCCCCEEEEEECC-C--H--H-------H-HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 76521567508997246-0--4--6-------7-7776530235531046664147776887652012104887654454
Q gi|254780453|r 83 IEHIANMGVAMLTVHAY-P--Q--T-------M-RSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~-~--~--~-------l-~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
...+-+ .+|++.+.+. + . + . ..-...-+..+++++. ++|-+.....+........++..++.+..
T Consensus 21 l~~lPd-svDiVsiw~~~~n~~~~~~~~~~~~~~~~~~~~l~~kGtKv~~-~~~~~~~g~g~~~~~~~~~~~~yA~~l~d 98 (255)
T cd06542 21 LLNLPD-SVDMVSLFAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLL-SILGNHLGAGFANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred HCCCCC-EEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 116998-1239997788778553320110267787778889865738999-98322445666788889999999999999
Q ss_pred HHHHCCCCCCCC----C---------C------HHHHHHHHHHCC--CCEEE
Q ss_conf 211024431113----4---------1------034455442024--40355
Q gi|254780453|r 150 QARDIGMGGIVC----S---------P------QEVRMVREIVGH--NMVIV 180 (238)
Q Consensus 150 ~a~~~g~~GvV~----s---------~------~ei~~ir~~~~~--~~~~i 180 (238)
.....|.|||=- + + .-++.+++.+|+ .++++
T Consensus 99 ~v~~yglDG~D~D~E~~~~~~~~~~~~~~~~~~~~v~eL~k~~GP~~Kll~i 150 (255)
T cd06542 99 TVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTI 150 (255)
T ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9998299866763665667788877773589999999999763998827999
No 386
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=32.86 E-value=37 Score=14.93 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEE-ECC-CHHHHHHHHHHCCCCCCEEEEEEE---CCCC--HHHHHHHH------CCCCH
Q ss_conf 42467898776521567508997-246-046777765302355310466641---4777--68876520------12104
Q gi|254780453|r 74 DIGSSVTAAIEHIANMGVAMLTV-HAY-PQTMRSAVSVVRDTGICLLAVTVL---TSMD--DFDLRESG------YEKDI 140 (238)
Q Consensus 74 DIpnTv~~~v~~~~~~g~d~iTv-H~~-~~~l~~~~~~~~~~~~~il~Vt~L---TS~~--~~~l~~~g------~~~~~ 140 (238)
=+|..-...++.+.+.|++.+.| |.. .+-.+++++..+-.....=|+... ..+. .+-+++.. .+---
T Consensus 68 Rvp~~~~~~i~~~LD~Ga~GiivP~V~t~eea~~~v~a~kypP~G~Rg~~~~~r~~~yg~~~~y~~~~n~~~~vi~qIEt 147 (249)
T TIGR03239 68 RPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIES 147 (249)
T ss_pred ECCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECC
T ss_conf 79999878999997089987895174559999999997344999998887663211247706999998644278999658
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHH----------------HHHHHCC-CCEEEEECCCCCCCCCCCCCEECCHHHH
Q ss_conf 8876544542110244311134103445----------------5442024-4035510113578657984003698999
Q gi|254780453|r 141 SDMVRMRAVQARDIGMGGIVCSPQEVRM----------------VREIVGH-NMVIVTPGIRMLGSATDGQKRFATPETA 203 (238)
Q Consensus 141 ~~~v~~~a~~a~~~g~~GvV~s~~ei~~----------------ir~~~~~-~~~~itPGI~~~~~~~~dq~r~~tp~~A 203 (238)
.+-+..+-.++.--|+|++-.-|.|++. ++++... .-.-..+||-....+ ..+..
T Consensus 148 ~~av~nldeI~av~GvD~ifiGP~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~Gi~~~~~~--------~~~~~ 219 (249)
T TIGR03239 148 QKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEA--------DARRY 219 (249)
T ss_pred HHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHH--------HHHHH
T ss_conf 8999879999678998889988489998769999999979999999999999985996698279999--------99999
Q ss_pred HHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 96599899998533088888999999999866
Q gi|254780453|r 204 LKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 204 i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
++.|.+++.+|--+.- -.++++...+.++
T Consensus 220 ~~~G~~~i~~g~D~~~---l~~aa~~~~~~fk 248 (249)
T TIGR03239 220 LEWGATFVAVGSDLGV---FRSATQALRDKFK 248 (249)
T ss_pred HHCCCCEEEEHHHHHH---HHHHHHHHHHHHC
T ss_conf 9869989996689999---9999999999844
No 387
>PRK10116 universal stress protein UspC; Provisional
Probab=32.79 E-value=37 Score=14.92 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCEEEEEECCC-----HHHHHHHHHHHCCCCCEEEEC--HHHHHCCCHHHHHHHH
Q ss_conf 98899960799-----899999999738852289986--8998425589999998
Q gi|254780453|r 13 KRLVVGLDLPT-----VKEAERIVSILSDTVSFYKIG--YHLSFSGGLELARDLI 60 (238)
Q Consensus 13 ~~livALD~~~-----~~e~l~l~~~l~~~i~~iKig--~~l~~~~G~~~i~~l~ 60 (238)
++|-||+|.+. .+++..+++..+-.+..+=+. .++|..++...+.++.
T Consensus 4 khILVAvDlS~~S~~~i~kA~~lA~~~~AklslihV~~~~~~y~~~~~~~~~d~~ 58 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLR 58 (142)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 6899994188506999999999999819989999993576665210221378899
No 388
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=32.75 E-value=37 Score=14.91 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=7.1
Q ss_pred HHHHHHHHH-CHHHHHHHHH
Q ss_conf 999999851-5466787764
Q gi|254780453|r 54 ELARDLISD-GKSVFLDMKL 72 (238)
Q Consensus 54 ~~i~~l~k~-~~~If~D~K~ 72 (238)
+.+.+++++ ..|+..|+-|
T Consensus 64 ~A~~~Ik~~~~vPLVaDiHf 83 (361)
T COG0821 64 EALKEIKQRLNVPLVADIHF 83 (361)
T ss_pred HHHHHHHHHCCCCEEEEEEC
T ss_conf 99999998479987987305
No 389
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=32.74 E-value=37 Score=14.91 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHCCCCEE-EECCHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99996599899-9985330888889999999998665
Q gi|254780453|r 201 ETALKYGASHI-VVSRPIVRAADPVSAAQEFQRAISL 236 (238)
Q Consensus 201 ~~Ai~~GaD~i-VVGR~I~~a~dP~~aa~~i~~~i~~ 236 (238)
.+-.+.|.|.+ |-||.-. .+...+.+..|++.|..
T Consensus 163 ~~L~~~Gv~slkIegr~~~-~~yv~~vv~~Yr~ald~ 198 (232)
T pfam01136 163 PELLEAGVDSLKIEGRMKS-PEYVAEVVRAYREALDA 198 (232)
T ss_pred HHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHHHHH
T ss_conf 9999809988999841599-78999999999999999
No 390
>PRK12862 malic enzyme; Reviewed
Probab=31.92 E-value=39 Score=14.83 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=54.1
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHC-CCHHHHHHHHH-HCHHHHHHHHHCCHHHHHHHHHHHHCCC-C--
Q ss_conf 99960799899999999738852289986899842-55899999985-1546678776404246789877652156-7--
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFS-GGLELARDLIS-DGKSVFLDMKLFDIGSSVTAAIEHIANM-G-- 90 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~-~G~~~i~~l~k-~~~~If~D~K~~DIpnTv~~~v~~~~~~-g-- 90 (238)
=+-+|..|.++..+.++.+.|...++ +++=+.. .-.++-++|++ .+.|||-|=- |-.--.+..++..+.+. |
T Consensus 113 ~i~~~~~d~~~~i~~v~~~~ptfggi--nledi~ap~cf~ie~~l~~~~~ipv~hddq-hgtaiv~~a~l~nal~~~~k~ 189 (761)
T PRK12862 113 DIELDESDPDKLVEIIAALEPTFGGI--NLEDIKAPECFEVERKLRERMKIPVFHDDQ-HGTAIIVAAAVLNGLKVVGKD 189 (761)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCCEE--CHHHCCCCCHHHHHHHHHHHCCCCEECCCC-CHHHHHHHHHHHHHHHHHCCC
T ss_conf 44118899899999999858886602--798868973238999999855998233776-518999999999999984885
Q ss_pred ---CEEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf ---5089972460467777653023553
Q gi|254780453|r 91 ---VAMLTVHAYPQTMRSAVSVVRDTGI 115 (238)
Q Consensus 91 ---~d~iTvH~~~~~l~~~~~~~~~~~~ 115 (238)
+.++ +.+.|-..-++.+.....+.
T Consensus 190 ~~~~kiv-~~GaGaa~~a~~~ll~~~G~ 216 (761)
T PRK12862 190 IEDVKLV-ASGAGAAALACLDLLVSLGV 216 (761)
T ss_pred HHHEEEE-EECCCHHHHHHHHHHHHCCC
T ss_conf 6671899-97887889999999998399
No 391
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=31.77 E-value=39 Score=14.81 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=13.3
Q ss_pred ECCHHHHHHCCCCEEEE----CCHHCCC
Q ss_conf 36989999659989999----8533088
Q gi|254780453|r 197 FATPETALKYGASHIVV----SRPIVRA 220 (238)
Q Consensus 197 ~~tp~~Ai~~GaD~iVV----GR~I~~a 220 (238)
..+|...++.| |-|| |+.|+.+
T Consensus 248 ~lsP~~vL~RG--Yaiv~~~~gkiI~s~ 273 (295)
T pfam02601 248 ALSPLKTLKRG--FAIVRRKDGKIVTSA 273 (295)
T ss_pred HCCHHHHHHCC--EEEEECCCCCEECCH
T ss_conf 67967798486--089996999997488
No 392
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=31.70 E-value=39 Score=14.80 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC----------H--------HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC
Q ss_conf 4678987765215675089972460----------4--------677776530235531046664147776887652012
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAYP----------Q--------TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE 137 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~~----------~--------~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~ 137 (238)
|.++..+.+.+.+. +|++-+...+ | -+.+.+++.+..+.- ||+=+- +|+.
T Consensus 84 ~e~~~~Aa~~~~~~-~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~~~~P---VtvKiR--------~G~d 151 (233)
T cd02911 84 LEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVP---VSVKIR--------AGVD 151 (233)
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCC---EEEEEE--------CCCC
T ss_conf 99999999997436-99999979999289837975377738989999999999853898---427985--------6999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC-----C-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHH---HHCCC
Q ss_conf 1048876544542110244311134-----1-0344554420244035510113578657984003698999---96599
Q gi|254780453|r 138 KDISDMVRMRAVQARDIGMGGIVCS-----P-QEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETA---LKYGA 208 (238)
Q Consensus 138 ~~~~~~v~~~a~~a~~~g~~GvV~s-----~-~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~A---i~~Ga 208 (238)
.+. ..+++.+.++|++++-.. . -+...+++.. ...-+ |+ +++ +.|+++| ++.|+
T Consensus 152 ~~~----~~~a~~~e~aG~~~l~v~~~~~~~~ad~~~I~~~~-~~i~V----ig--NGD------I~s~eda~~~~~~G~ 214 (233)
T cd02911 152 VDD----EELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFI----IG--NNS------VTTIESAKEMFSYGA 214 (233)
T ss_pred CCH----HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHC-CCCEE----EE--ECC------CCCHHHHHHHHHHCC
T ss_conf 888----99999999839607994320778508999999863-79879----98--089------699999999998599
Q ss_pred CEEEECCHHCC
Q ss_conf 89999853308
Q gi|254780453|r 209 SHIVVSRPIVR 219 (238)
Q Consensus 209 D~iVVGR~I~~ 219 (238)
|.+-|||+..+
T Consensus 215 DgVMIgRgAL~ 225 (233)
T cd02911 215 DMVSVARASLP 225 (233)
T ss_pred CEEEECHHHCC
T ss_conf 99997387556
No 393
>PRK03670 competence damage-inducible protein A; Provisional
Probab=31.63 E-value=39 Score=14.80 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=37.1
Q ss_pred CEEEECHHHHH-----CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 28998689984-----2558999999851546678776404246789877652156750899724
Q gi|254780453|r 39 SFYKIGYHLSF-----SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 39 ~~iKig~~l~~-----~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
.++=||.++.. ....-+-++|.+.|..+..-.-..|-++.+..++..+.+...|++.+.+
T Consensus 4 ~II~IGdElL~G~~~DtNs~~la~~L~~~Gi~v~~~~~V~Dd~~~I~~~l~~~~~~~~d~Vi~tG 68 (252)
T PRK03670 4 EIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVILEALDRKPEVLIISG 68 (252)
T ss_pred EEEEECCCCCCCCEECHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99998034006510524299999999967981889999698899999999999853799999838
No 394
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=31.40 E-value=39 Score=14.77 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=10.4
Q ss_pred HHHHHHHHHHCCCCCEEEEE
Q ss_conf 67898776521567508997
Q gi|254780453|r 77 SSVTAAIEHIANMGVAMLTV 96 (238)
Q Consensus 77 nTv~~~v~~~~~~g~d~iTv 96 (238)
+++...++.+..+|+..+.+
T Consensus 91 ~~v~~pir~lk~LGv~~li~ 110 (272)
T PRK08202 91 EAVTFPVRVMKALGVETLIV 110 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 88304999999849968999
No 395
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=31.36 E-value=22 Score=16.37 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCHHHHHHHHHCC----------HHHHHHHHHHHHCCC
Q ss_conf 8999999851546678776404----------246789877652156
Q gi|254780453|r 53 LELARDLISDGKSVFLDMKLFD----------IGSSVTAAIEHIANM 89 (238)
Q Consensus 53 ~~~i~~l~k~~~~If~D~K~~D----------IpnTv~~~v~~~~~~ 89 (238)
.++|+.-|++|.+|+.|.-|.| ||.-++..+..+|-|
T Consensus 30 ~~II~~AK~~gipi~ed~~L~~~L~~l~l~~~IPee~Y~~Va~iFaF 76 (84)
T TIGR00789 30 EKIIELAKKHGIPIKEDEDLVDVLLKLDLDDEIPEELYEVVAEIFAF 76 (84)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999997638997658289998744054576885788999999999
No 396
>PRK10481 hypothetical protein; Provisional
Probab=31.33 E-value=40 Score=14.76 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=8.2
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999659989999
Q gi|254780453|r 201 ETALKYGASHIVV 213 (238)
Q Consensus 201 ~~Ai~~GaD~iVV 213 (238)
++-...|||.+|.
T Consensus 175 ~~L~~~gadlivL 187 (224)
T PRK10481 175 KELLAQGADLIVL 187 (224)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9998659999999
No 397
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=31.13 E-value=40 Score=14.74 Aligned_cols=98 Identities=21% Similarity=0.412 Sum_probs=44.4
Q ss_pred HHHHHHCCCCCEEEEEECCCH--HHHHHHHHHC----CCCCC---EEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 877652156750899724604--6777765302----35531---04666414777688765201210488765445421
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYPQ--TMRSAVSVVR----DTGIC---LLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQA 151 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~~--~l~~~~~~~~----~~~~~---il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a 151 (238)
.+++.+.+-|+|.+-+-..-+ -+++++.+.+ +.+.. ++.+|+-+| ...+ ..+.++.....+
T Consensus 147 eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~s--G~tl----~Gq~~~a~~~~l---- 216 (311)
T COG0646 147 EQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDS--GRTL----SGQTIEAFLNSL---- 216 (311)
T ss_pred HHHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC--CEEC----CCCCHHHHHHHH----
T ss_conf 999999837875899752216898999999999998732776547999998037--6123----798689999986----
Q ss_pred HHCCC--CCCCCC--CHHHH-HHHHH--HCCCCEEEEECCCCCC
Q ss_conf 10244--311134--10344-55442--0244035510113578
Q gi|254780453|r 152 RDIGM--GGIVCS--PQEVR-MVREI--VGHNMVIVTPGIRMLG 188 (238)
Q Consensus 152 ~~~g~--~GvV~s--~~ei~-~ir~~--~~~~~~~itPGI~~~~ 188 (238)
...|+ .|+=|+ |++++ .+++. ....++.+-|--+++.
T Consensus 217 ~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~ 260 (311)
T COG0646 217 EHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPN 260 (311)
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 63597478534566889999999998741692499807999975
No 398
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=30.46 E-value=41 Score=14.67 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=23.1
Q ss_pred EEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC-CCHH
Q ss_conf 3551011357865798400369899996599899998533088-8889
Q gi|254780453|r 178 VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA-ADPV 224 (238)
Q Consensus 178 ~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-~dP~ 224 (238)
++--.|||..|+ .-.|+..|||.+-+|+-.-.. +.|.
T Consensus 333 iIADGGIr~sGd----------i~KAla~GA~~VMlGsllAGt~EsPG 370 (479)
T PRK07807 333 VWADGGVRHPRD----------VALALAAGASNVMIGSWFAGTYESPG 370 (479)
T ss_pred EEECCCCCCCCH----------HHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 894587253467----------99998728987888830157777996
No 399
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=30.14 E-value=41 Score=14.64 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=59.6
Q ss_pred CEEEEEECCC-HHHHHHHHHHHCCCCCEEEECHHHHHCCCH----HHHHHHHHH-CHHHHHHHHH-CC-----HHHHH-H
Q ss_conf 8899960799-899999999738852289986899842558----999999851-5466787764-04-----24678-9
Q gi|254780453|r 14 RLVVGLDLPT-VKEAERIVSILSDTVSFYKIGYHLSFSGGL----ELARDLISD-GKSVFLDMKL-FD-----IGSSV-T 80 (238)
Q Consensus 14 ~livALD~~~-~~e~l~l~~~l~~~i~~iKig~~l~~~~G~----~~i~~l~k~-~~~If~D~K~-~D-----IpnTv-~ 80 (238)
++|+.+=.++ .++..++.+.. ...+++++=.+++..... +.++.+++. ..|+++-.-. .+ ..... .
T Consensus 1 ~icv~i~~~~~~~~~~~~~~~~-~gaD~vEiRlD~l~~~~~~~~~~~i~~l~~~~~~piI~T~R~~~eGG~~~~~~~~~~ 79 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELL-LGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYL 79 (225)
T ss_pred CEEEEECCCCHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHH
T ss_conf 9899956899799999999755-698989998703678677889999999985599988999756776899889999999
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 877652156750899724604677776530235531046
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLA 119 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~ 119 (238)
..++.+.++++|++.|-..........+..+..+.++++
T Consensus 80 ~ll~~~~~~~~d~vDiEl~~~~~~~~~~~~~~~~~kvI~ 118 (225)
T cd00502 80 ELLEEALKLGPDYVDIELDSALLEELINSRKKGNTKIIG 118 (225)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf 999999984998999973662467999987618988999
No 400
>KOG0618 consensus
Probab=30.00 E-value=42 Score=14.62 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=20.5
Q ss_pred CEEEEC--------------CHHCCCCCHHHHHHHHHHH
Q ss_conf 899998--------------5330888889999999998
Q gi|254780453|r 209 SHIVVS--------------RPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 209 D~iVVG--------------R~I~~a~dP~~aa~~i~~~ 233 (238)
-|+||| +.+.+..||..||++++..
T Consensus 716 E~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~ 754 (1081)
T KOG0618 716 EFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDL 754 (1081)
T ss_pred EEEEECCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 178973367765515999999986388667899999999
No 401
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=29.90 E-value=42 Score=14.61 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=39.4
Q ss_pred HHHHHHHCCCCCEEEEE-----ECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 98776521567508997-----2460-46777765302355310466641477768876520121048876544542110
Q gi|254780453|r 80 TAAIEHIANMGVAMLTV-----HAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARD 153 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTv-----H~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~ 153 (238)
..+++.+.+-.+|.+-. |.=| |.|+...+......+++|- ||-+.++. -.+.|.+
T Consensus 38 ~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi~---LsAfGQE~----------------ITqrA~~ 98 (270)
T TIGR02875 38 VDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVIM---LSAFGQEK----------------ITQRAVA 98 (270)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE---EECCCHHH----------------HHHHHHH
T ss_conf 8999999608998999515043000579999988988744895888---52237558----------------9999997
Q ss_pred CCCCCCCCCCHHH----HHHHHHHC
Q ss_conf 2443111341034----45544202
Q gi|254780453|r 154 IGMGGIVCSPQEV----RMVREIVG 174 (238)
Q Consensus 154 ~g~~GvV~s~~ei----~~ir~~~~ 174 (238)
.|.|-+|..|.|+ +++|+...
T Consensus 99 LGADYYvlKPfDle~L~~RIRQl~~ 123 (270)
T TIGR02875 99 LGADYYVLKPFDLEILAARIRQLAE 123 (270)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHC
T ss_conf 2898156650417889999998624
No 402
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.89 E-value=42 Score=14.61 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=17.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 78988999607998999999997388522899
Q gi|254780453|r 11 EKKRLVVGLDLPTVKEAERIVSILSDTVSFYK 42 (238)
Q Consensus 11 kk~~livALD~~~~~e~l~l~~~l~~~i~~iK 42 (238)
+|+.++++.- .+.+=+.++++.++-..+-+.
T Consensus 4 ~~~m~i~sgs-~~~~LA~~iA~~Lg~~l~~~~ 34 (319)
T PRK04923 4 QRNLLVFSGN-ANKPLAQSICKELGVRMGKAL 34 (319)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEE
T ss_conf 8757999789-988999999998699614028
No 403
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106 Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi)..
Probab=29.88 E-value=30 Score=15.49 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=19.4
Q ss_pred EECCHHCCCCCHHHHHHHHHHH
Q ss_conf 9985330888889999999998
Q gi|254780453|r 212 VVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 212 VVGR~I~~a~dP~~aa~~i~~~ 233 (238)
|+|.+|+-++||++..+++.+.
T Consensus 339 I~G~~I~l~~~Pk~EI~~~L~~ 360 (365)
T TIGR02735 339 ITGKSITLSENPKAEIKAILSK 360 (365)
T ss_pred HCCCCEEECCCCHHHHHHHHHH
T ss_conf 3487012076736899999875
No 404
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=29.74 E-value=42 Score=14.62 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCCCCHHH
Q ss_conf 31113410344554420--2440355101135786579840036989999659989999853308888899
Q gi|254780453|r 157 GGIVCSPQEVRMVREIV--GHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVS 225 (238)
Q Consensus 157 ~GvV~s~~ei~~ir~~~--~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a~dP~~ 225 (238)
||...-|+ +..+++.. -...++-+.||. ..+|=. ...+--..|.|-.|||.++|.-+=-.+
T Consensus 177 DG~lsGPN-~~LL~eVA~~TDA~v~ASGGiS----~LdDl~---~i~~l~~~Gvds~I~GKaLY~~~FTL~ 239 (246)
T TIGR01919 177 DGTLSGPN-VELLAEVAERTDAPVVASGGIS----KLDDLR---AIAKLAEEGVDSAIVGKALYARKFTLE 239 (246)
T ss_pred CCCCCCCC-HHHHHHHHHHCCCCEEEECCCC----CHHHHH---HHHHHHHCCCCEEEECHHHHHHHCCHH
T ss_conf 78667852-8999998862288478717756----188999---999997558865762025553203668
No 405
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=29.69 E-value=42 Score=14.59 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCCCEE-EECHHHHHCCCHH
Q ss_conf 899999999738852289-9868998425589
Q gi|254780453|r 24 VKEAERIVSILSDTVSFY-KIGYHLSFSGGLE 54 (238)
Q Consensus 24 ~~e~l~l~~~l~~~i~~i-Kig~~l~~~~G~~ 54 (238)
.++..+++..-.+.|.+| ++|++++.....+
T Consensus 80 ~~~l~~l~~~~~~~v~AiGE~GLDY~~~~~~~ 111 (269)
T TIGR00010 80 IKELEKLAKNAHPKVVAIGETGLDYYKADEKK 111 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
T ss_conf 99999999850695479851044043068752
No 406
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=29.54 E-value=42 Score=14.57 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEE-EC-CCHHHHHHHHHHC
Q ss_conf 42467898776521567508997-24-6046777765302
Q gi|254780453|r 74 DIGSSVTAAIEHIANMGVAMLTV-HA-YPQTMRSAVSVVR 111 (238)
Q Consensus 74 DIpnTv~~~v~~~~~~g~d~iTv-H~-~~~~l~~~~~~~~ 111 (238)
=+|..-...++.+.+.|++.+.+ |. +.+-.+++++..+
T Consensus 75 Rvp~~~~~~i~r~LD~Ga~GvivP~V~s~eea~~~V~a~~ 114 (256)
T PRK10558 75 RVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTR 114 (256)
T ss_pred ECCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHEE
T ss_conf 6788988999999707987556147699999999998745
No 407
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.44 E-value=42 Score=14.56 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=47.9
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHC---CHH--HH--HHHHHHHHC----CCCCEEEEEECCCHHHHHHHH
Q ss_conf 8998689984255899999985154667877640---424--67--898776521----567508997246046777765
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLF---DIG--SS--VTAAIEHIA----NMGVAMLTVHAYPQTMRSAVS 108 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~---DIp--nT--v~~~v~~~~----~~g~d~iTvH~~~~~l~~~~~ 108 (238)
+++.+.+-....-.++.++|+++|..+++|--.+ ..+ .+ ....+..+. ...+|++.+-+..|++-.+.+
T Consensus 7 i~~~~~~~a~~~a~~l~~~L~~~gi~v~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~IvlGGDGT~L~aar 86 (305)
T PRK02649 7 IYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVLGGDGTVLSAAR 86 (305)
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf 97389989999999999999988999999744123228787553211244111263335777339999837699999999
Q ss_pred HHCCCCCCEEEEE-----EECCCCHHHHH
Q ss_conf 3023553104666-----41477768876
Q gi|254780453|r 109 VVRDTGICLLAVT-----VLTSMDDFDLR 132 (238)
Q Consensus 109 ~~~~~~~~il~Vt-----~LTS~~~~~l~ 132 (238)
....+++-++||- -||..+.+++.
T Consensus 87 ~~~~~~iPilGIN~G~LGFLt~i~~~~~~ 115 (305)
T PRK02649 87 QTAPCGIPLLTINTGHLGFLTEAYLNQLD 115 (305)
T ss_pred HHCCCCCCEEEEECCCEEEECCCCHHHHH
T ss_conf 85336997898944862340447988999
No 408
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.44 E-value=43 Score=14.56 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECHHH------HHCCCHHHHHHHH----HHCHHH---HHH--HHH--C-CHHH------
Q ss_conf 99899999999738852289986899------8425589999998----515466---787--764--0-4246------
Q gi|254780453|r 22 PTVKEAERIVSILSDTVSFYKIGYHL------SFSGGLELARDLI----SDGKSV---FLD--MKL--F-DIGS------ 77 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i~~iKig~~l------~~~~G~~~i~~l~----k~~~~I---f~D--~K~--~-DIpn------ 77 (238)
.+.+|.++++++++ .+++++..+- -+.+..+.+++++ +.|.+| -++ +++ + .=|.
T Consensus 16 ~sw~e~f~~Ak~~G--fd~IE~siDe~d~~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~~~r~~~l 93 (284)
T PRK13210 16 LSWPERLVLAKECG--FDFVEMSVDETDERLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDEATRERAL 93 (284)
T ss_pred CCHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999869--9889996067542225789998999999999998298356641556668999998989999999
Q ss_pred -HHHHHHHHHCCCCCEEEEEECCC---------------HHHHHHHHHHCCCCCCEE
Q ss_conf -78987765215675089972460---------------467777653023553104
Q gi|254780453|r 78 -SVTAAIEHIANMGVAMLTVHAYP---------------QTMRSAVSVVRDTGICLL 118 (238)
Q Consensus 78 -Tv~~~v~~~~~~g~d~iTvH~~~---------------~~l~~~~~~~~~~~~~il 118 (238)
.+.+++..+.++|++.+.+.+.. +.++.+.+.+.+.++.|.
T Consensus 94 e~l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV~L~ 150 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 999999999998099789968876666869889999999999999999998399899
No 409
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=29.42 E-value=43 Score=14.56 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 99999999738852289986899842558999999851546678776404246789877652156750899724604677
Q gi|254780453|r 25 KEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMR 104 (238)
Q Consensus 25 ~e~l~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~ 104 (238)
-|++..++..++....+|+|=..+.+. + +. ..++.| +..+...|...+.||+.+..+.
T Consensus 3 ~ea~PYi~~~rgktiVIklGG~~l~d~--~----~~---~~~~~d-------------I~~L~~~G~~vVlVHGggpqi~ 60 (279)
T cd04250 3 IEALPYIQKFRGKTVVIKYGGNAMKDE--E----LK---ESFARD-------------IVLLKYVGINPVVVHGGGPEIN 60 (279)
T ss_pred HHHHHHHHHHCCCEEEEEECHHHHCCH--H----HH---HHHHHH-------------HHHHHHCCCEEEEEECCCHHHH
T ss_conf 466678998589989999890784697--7----99---999999-------------9999988992999969967999
Q ss_pred HHHH
Q ss_conf 7765
Q gi|254780453|r 105 SAVS 108 (238)
Q Consensus 105 ~~~~ 108 (238)
+..+
T Consensus 61 ~~l~ 64 (279)
T cd04250 61 EMLK 64 (279)
T ss_pred HHHH
T ss_conf 9999
No 410
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=29.10 E-value=43 Score=14.52 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4678987765215675089972460467777653023553104666
Q gi|254780453|r 76 GSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVT 121 (238)
Q Consensus 76 pnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt 121 (238)
+-|+.++++...--.-+.+-|++.+|...-+++.++..+..+++++
T Consensus 152 GiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~ 197 (339)
T COG1064 152 GITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT 197 (339)
T ss_pred EEEEEEEHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 0057600465389999899998774899999999998699699995
No 411
>PRK05826 pyruvate kinase; Provisional
Probab=28.97 E-value=43 Score=14.51 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=47.0
Q ss_pred HHHHHHCCCCC----CCCCCHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 54211024431----1134103445544202----440355101135786579840036989999659989999853308
Q gi|254780453|r 148 AVQARDIGMGG----IVCSPQEVRMVREIVG----HNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 148 a~~a~~~g~~G----vV~s~~ei~~ir~~~~----~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
...+.+.|+|- ||-++.++..+|+++. ++..++ .=| .-+.=+..-.+ |-.-+|.+.|.|+=..
T Consensus 179 i~fa~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~II-aKI-------E~~~al~Nlde-Ii~~sDgIMIARGDLg 249 (461)
T PRK05826 179 IKFAAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKII-AKI-------ERAEAVDNLDE-IIEASDGIMVARGDLG 249 (461)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-EEE-------CCHHHHHHHHH-HHHHCCEEEEECCCCC
T ss_conf 99999769999974688986789999999997299984489-983-------68899873999-9986589999778530
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 8888999999999866
Q gi|254780453|r 220 AADPVSAAQEFQRAIS 235 (238)
Q Consensus 220 a~dP~~aa~~i~~~i~ 235 (238)
-+=|.+..-.+|+.|-
T Consensus 250 vEi~~e~vp~~Qk~Ii 265 (461)
T PRK05826 250 VEIPDAEVPGLQKKII 265 (461)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 3268767499999999
No 412
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=28.67 E-value=20 Score=16.61 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=39.1
Q ss_pred EECCCHHHHHHHHHHHCC-CCC-EEEECHHHHHCCCHH---HHHHHHH--HCHHHHHHHHHCCHHHHHH
Q ss_conf 607998999999997388-522-899868998425589---9999985--1546678776404246789
Q gi|254780453|r 19 LDLPTVKEAERIVSILSD-TVS-FYKIGYHLSFSGGLE---LARDLIS--DGKSVFLDMKLFDIGSSVT 80 (238)
Q Consensus 19 LD~~~~~e~l~l~~~l~~-~i~-~iKig~~l~~~~G~~---~i~~l~k--~~~~If~D~K~~DIpnTv~ 80 (238)
||+.+++|+.++++++++ |+- .+.=+.||+.+.-.+ ++++|++ .||+| +-.++-|.
T Consensus 43 vsV~tlr~lcDIADk~~dGylr~T~r~NvEFlv~d~~K~~~li~~L~~RG~GFpv------GGt~~av~ 105 (366)
T TIGR02066 43 VSVDTLRKLCDIADKYGDGYLRWTIRNNVEFLVSDESKVQPLIDELEKRGLGFPV------GGTGGAVA 105 (366)
T ss_pred EEHHHHHHHHHHCHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEC------CCCHHCCC
T ss_conf 6154565563001111576078741166568745878877999999718750001------47100010
No 413
>KOG4849 consensus
Probab=28.44 E-value=28 Score=15.69 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=30.1
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 89986899842558999999851546678776404
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFD 74 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~D 74 (238)
..-||.-+++....++++.++..|..-|+|.||+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE 116 (498)
T KOG4849 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE 116 (498)
T ss_pred EEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89951256773508999999861077776656653
No 414
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=28.29 E-value=42 Score=14.56 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=19.0
Q ss_pred EEEEECCCCC---CCCCCCCCEECCHHHHHHCCCCEEEECCHH
Q ss_conf 3551011357---865798400369899996599899998533
Q gi|254780453|r 178 VIVTPGIRML---GSATDGQKRFATPETALKYGASHIVVSRPI 217 (238)
Q Consensus 178 ~~itPGI~~~---~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I 217 (238)
+-++-+|++. ..-.+||.|+..-..+=+.-+.+.|||+.-
T Consensus 196 l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~et 238 (553)
T COG4187 196 LEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCET 238 (553)
T ss_pred CEEEEEECCCCCCCCCCCCCCEEEEECCCHHHCCEEEEEEECC
T ss_conf 5378873144446788986441788232031021358974113
No 415
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=27.91 E-value=45 Score=14.39 Aligned_cols=95 Identities=8% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHH-HCCCHHHHHHHHHHCHHH-HHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 8988999607998999999997388522899868998-425589999998515466-78776404246789877652156
Q gi|254780453|r 12 KKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLS-FSGGLELARDLISDGKSV-FLDMKLFDIGSSVTAAIEHIANM 89 (238)
Q Consensus 12 k~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~-~~~G~~~i~~l~k~~~~I-f~D~K~~DIpnTv~~~v~~~~~~ 89 (238)
...+-|.-...+..++++.+....|.+..+-+.+|=. ...|.+.+++++++.+.+ ++=+=.++=|. .+..+.+.
T Consensus 26 ~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~vivls~~~~~~----~v~~al~~ 101 (216)
T PRK10840 26 IEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPA----ILSAVLDL 101 (216)
T ss_pred CCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHHHHC
T ss_conf 99968999879999999998623989899826779998878999999999858998089984778789----99999858
Q ss_pred CCEEEEEE-CCCHHHHHHHHHH
Q ss_conf 75089972-4604677776530
Q gi|254780453|r 90 GVAMLTVH-AYPQTMRSAVSVV 110 (238)
Q Consensus 90 g~d~iTvH-~~~~~l~~~~~~~ 110 (238)
|++..-.- +.++.+..+++..
T Consensus 102 Ga~Gyl~K~~~~~~L~~AI~~v 123 (216)
T PRK10840 102 DIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred CCCEEEECCCCHHHHHHHHHHH
T ss_conf 9748998789999999999999
No 416
>PRK12861 malic enzyme; Reviewed
Probab=27.88 E-value=45 Score=14.39 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=39.4
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHC-CCHHHHHHHHH-HCHHHHHHHH
Q ss_conf 99960799899999999738852289986899842-55899999985-1546678776
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFS-GGLELARDLIS-DGKSVFLDMK 71 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l~~~i~~iKig~~l~~~-~G~~~i~~l~k-~~~~If~D~K 71 (238)
=+-+|..|.++..+.++.+.|...++ +++=+.. .-.++-++|++ .+.|||-|=-
T Consensus 108 ~i~~~~~d~~~~i~~v~~~~ptfggi--nledi~ap~cf~ie~~l~~~~~ipv~hddq 163 (762)
T PRK12861 108 DIEINETDPDKLVDIIAGLEPTFGGI--NLEDIKAPECFTVERKLRERMKIPVFHDDQ 163 (762)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCCCC--CHHHCCCCCCHHHHHHHHHHCCCCEECCCC
T ss_conf 44208899899999999858875623--798768974027999999867998231677
No 417
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=27.85 E-value=45 Score=14.38 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHH--HHHCCHHHHH---HHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 6787--7640424678---9877652156750899724604677
Q gi|254780453|r 66 VFLD--MKLFDIGSSV---TAAIEHIANMGVAMLTVHAYPQTMR 104 (238)
Q Consensus 66 If~D--~K~~DIpnTv---~~~v~~~~~~g~d~iTvH~~~~~l~ 104 (238)
+|+. -+.|.+|-+. ..-+.++..+|+..+.+-.+.|.++
T Consensus 46 ~fl~RHG~~h~~~p~~inyrAni~alk~LGv~~ii~tnA~Gsl~ 89 (261)
T PRK08666 46 AFLARHGKGHSVPPHLINYRANIWALKELGVERILATSAVGSLN 89 (261)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99788899988785337603659999975997899840200155
No 418
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=27.76 E-value=45 Score=14.37 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=52.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH----HHCC---CC
Q ss_conf 7877640424678987765215675089972460467777653023553104666414777688765----2012---10
Q gi|254780453|r 67 FLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRE----SGYE---KD 139 (238)
Q Consensus 67 f~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~----~g~~---~~ 139 (238)
|..||.--.- .++++.+++.|+|.+-|=+-.|.+.-|....++.+.+++|+ =-+-|| |+.- +|++ .+
T Consensus 71 ~~EFK~~evR---~kA~~nLK~~GI~~LVViGGDGSy~GA~~L~~~gg~~~iGl--PGTIDN-DI~~TDyTIGfDTALNT 144 (302)
T TIGR02482 71 CPEFKTEEVR---EKAVENLKKLGIEALVVIGGDGSYTGAQKLYEEGGIPVIGL--PGTIDN-DIQGTDYTIGFDTALNT 144 (302)
T ss_pred CCCCCCHHHH---HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEE--CCCCCC-CCCCCCHHHHHHHHHHH
T ss_conf 8545687899---99999988748866899868440688999997179847874--585025-66643225566667437
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 4887654454211024
Q gi|254780453|r 140 ISDMVRMRAVQARDIG 155 (238)
Q Consensus 140 ~~~~v~~~a~~a~~~g 155 (238)
+-+.|.+....|.+-.
T Consensus 145 i~~avdKiRDTA~SHe 160 (302)
T TIGR02482 145 ILDAVDKIRDTATSHE 160 (302)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9987765421301216
No 419
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.34 E-value=46 Score=14.32 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=5.2
Q ss_pred CCCCEEEECCHHC
Q ss_conf 5998999985330
Q gi|254780453|r 206 YGASHIVVSRPIV 218 (238)
Q Consensus 206 ~GaD~iVVGR~I~ 218 (238)
.|.|-+|+--+|-
T Consensus 255 s~i~~ivvTnTip 267 (286)
T PRK00934 255 AGADELAVTNTIP 267 (286)
T ss_pred CCCCEEEECCCCC
T ss_conf 8998899858889
No 420
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=27.29 E-value=46 Score=14.32 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHH--HHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 4455442024403551011357865798400369899--996599899998533088888999999999866
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPET--ALKYGASHIVVSRPIVRAADPVSAAQEFQRAIS 235 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~~~i~ 235 (238)
++.+|+... .-+++.=|. |++.|-.|| |.. +-...||++|+=--=-+.+||.+-.+++.+.+.
T Consensus 355 L~~lr~~~~-~rli~VfG~---gG~Rd~~KR---~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i~~g~~ 419 (481)
T PRK00139 355 LDALRPHAK-GRLICVFGC---GGDRDKGKR---PLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGIT 419 (481)
T ss_pred HHHHHHHCC-CCEEEEECC---CCCCCCHHH---HHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999987648-986999898---677770141---89999999719989993999899899999999982698
No 421
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=27.27 E-value=46 Score=14.32 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=46.5
Q ss_pred EEEECCCHHHHHHHHHHHCCCC-CEE---------EECHHHHHCCC--HHHHHHHHHHCH--HHHHHHHHCCHHHHHHHH
Q ss_conf 9960799899999999738852-289---------98689984255--899999985154--667877640424678987
Q gi|254780453|r 17 VGLDLPTVKEAERIVSILSDTV-SFY---------KIGYHLSFSGG--LELARDLISDGK--SVFLDMKLFDIGSSVTAA 82 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~l~~~i-~~i---------Kig~~l~~~~G--~~~i~~l~k~~~--~If~D~K~~DIpnTv~~~ 82 (238)
+=+-....++.++++.++.|.- |.+ .=||++....+ .+.++.|++.+. .+|.| .| ..+
T Consensus 66 lNlE~~~~~emi~ia~~~kP~qvtLVPE~r~elTTegGld~~~~~~~L~~~i~~lk~~girvSlFID---pd-----~~~ 137 (239)
T pfam03740 66 FNIEMAPTEEMLELALKTKPHQVTLVPEKREEITTEGGLDVVAQLEKLKPAIRRLKNAGIRVSLFID---PD-----PEQ 137 (239)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC---CC-----HHH
T ss_conf 6775687499999999849985898889998735688806334068999999998607853899707---99-----899
Q ss_pred HHHHCCCCCEEEEEECCCHH
Q ss_conf 76521567508997246046
Q gi|254780453|r 83 IEHIANMGVAMLTVHAYPQT 102 (238)
Q Consensus 83 v~~~~~~g~d~iTvH~~~~~ 102 (238)
++.+.+.|+|.+-+|..++.
T Consensus 138 i~~a~~~Gad~VElhTG~YA 157 (239)
T pfam03740 138 IEAAKIVGADRIELHTGPYA 157 (239)
T ss_pred HHHHHHCCCCEEEEECHHHH
T ss_conf 99999809299985047788
No 422
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.16 E-value=47 Score=14.30 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECHHHHHCCCH---HHHHHHHHHCHH-HHHHHHHCCHH---HHHHHHHHHHCCCCCEEE
Q ss_conf 99899999999738852289986899842558---999999851546-67877640424---678987765215675089
Q gi|254780453|r 22 PTVKEAERIVSILSDTVSFYKIGYHLSFSGGL---ELARDLISDGKS-VFLDMKLFDIG---SSVTAAIEHIANMGVAML 94 (238)
Q Consensus 22 ~~~~e~l~l~~~l~~~i~~iKig~~l~~~~G~---~~i~~l~k~~~~-If~D~K~~DIp---nTv~~~v~~~~~~g~d~i 94 (238)
.+.+|+++-++ +-.+++-+-.|---+.|. =.|+++++.-+. --.-.-..|.| -|+..+.-.+.-.|+||+
T Consensus 8 in~eEA~eAie---GGAdIiDVKNP~EGSLGANFPWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYi 84 (235)
T COG1891 8 INREEAIEAIE---GGADIIDVKNPAEGSLGANFPWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYI 84 (235)
T ss_pred CCHHHHHHHHH---CCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 77899999861---788667426846576668870799999975856635324306778898548899887675077647
Q ss_pred EEECCC--------HHHHHHHHHHCCCCC
Q ss_conf 972460--------467777653023553
Q gi|254780453|r 95 TVHAYP--------QTMRSAVSVVRDTGI 115 (238)
Q Consensus 95 TvH~~~--------~~l~~~~~~~~~~~~ 115 (238)
-|-..+ ++|+....+.++...
T Consensus 85 KVGLYg~kn~~eA~e~m~~vvrAVkd~d~ 113 (235)
T COG1891 85 KVGLYGTKNEEEALEVMKNVVRAVKDFDP 113 (235)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 87302366599999999999999861387
No 423
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=26.72 E-value=47 Score=14.25 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=18.0
Q ss_pred CCCCCCCCEECCHHHH--HHCCCCEEEECCHHCCCCCHHHHHHHHHHH
Q ss_conf 8657984003698999--965998999985330888889999999998
Q gi|254780453|r 188 GSATDGQKRFATPETA--LKYGASHIVVSRPIVRAADPVSAAQEFQRA 233 (238)
Q Consensus 188 ~~~~~dq~r~~tp~~A--i~~GaD~iVVGR~I~~a~dP~~aa~~i~~~ 233 (238)
|++.|-.|| |... -...||++||=--=-+++||.+-.+.|.+-
T Consensus 392 gGdRD~~KR---p~Mg~iA~~~aD~viiT~DNPR~Edp~~I~~dI~~g 436 (953)
T PRK11929 392 GGNRDKGKR---PEMGRIAAELADRVIVTSDNPRDEAPEDIIDQILAG 436 (953)
T ss_pred CCCCCCCHH---HHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 787761034---899999998499899868998999999999999856
No 424
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=26.70 E-value=47 Score=14.25 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH-CCCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCHH-HH
Q ss_conf 9741123115789889996079989999999973-885228998689984255899999985154667877640424-67
Q gi|254780453|r 1 MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSIL-SDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFDIG-SS 78 (238)
Q Consensus 1 ~~~~~~~~~~kk~~livALD~~~~~e~l~l~~~l-~~~i~~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K~~DIp-nT 78 (238)
|++..++...++.+++-=+-..+.++++.+++.+ ..-+..++|-+. ...-.+.|+.+++....++ || -|
T Consensus 1 ~~~~~~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~--sp~a~e~I~~l~~~~p~~l-------IGAGT 71 (211)
T COG0800 1 MMKMKILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLR--TPAALEAIRALAKEFPEAL-------IGAGT 71 (211)
T ss_pred CCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHCCCCE-------ECCCC
T ss_conf 95467999998788448997089999999999999769876999647--9878999999998674658-------82455
Q ss_pred H--HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC-CEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8--987765215675089972460467777653023553-1046664147776887652012104887654454211024
Q gi|254780453|r 79 V--TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGI-CLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIG 155 (238)
Q Consensus 79 v--~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~-~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g 155 (238)
| ..++..+.+.|++++- +|+.-.+.++.+..++. .+=|+ +|...- ..|.+.|
T Consensus 72 VL~~~q~~~a~~aGa~fiV---sP~~~~ev~~~a~~~~ip~~PG~--~TptEi--------------------~~Ale~G 126 (211)
T COG0800 72 VLNPEQARQAIAAGAQFIV---SPGLNPEVAKAANRYGIPYIPGV--ATPTEI--------------------MAALELG 126 (211)
T ss_pred CCCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHCCCCCCCCC--CCHHHH--------------------HHHHHCC
T ss_conf 6699999999985997898---99999999999986799636887--998999--------------------9999807
Q ss_pred CCCC------CC-CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC-----CCCH
Q ss_conf 4311------13-4103445544202440355101135786579840036989999659989999853308-----8888
Q gi|254780453|r 156 MGGI------VC-SPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR-----AADP 223 (238)
Q Consensus 156 ~~Gv------V~-s~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~-----a~dP 223 (238)
.+.+ ++ ++.-++.+.--+..-.+.-|.||.+.+ ..+-+..|+..+=+|...+. ++|.
T Consensus 127 ~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N-----------~~~yla~gv~avG~Gs~l~~~~~~~~~~~ 195 (211)
T COG0800 127 ASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLDN-----------AADYLAAGVVAVGLGSWLVPKDLIAAGDW 195 (211)
T ss_pred HHHEEECCCCCCCCHHHHHHHCCCCCCCEEEECCCCCHHH-----------HHHHHHCCCEEEECCCCCCCHHHHHCCCH
T ss_conf 2245643731137698999873899998585469878777-----------99997178059954744267355531449
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999998665
Q gi|254780453|r 224 VSAAQEFQRAISL 236 (238)
Q Consensus 224 ~~aa~~i~~~i~~ 236 (238)
.+..+.-++.+++
T Consensus 196 ~~i~~~a~~~~~~ 208 (211)
T COG0800 196 DRITELAREAVAL 208 (211)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 425
>PRK12443 uridylate kinase; Reviewed
Probab=26.67 E-value=47 Score=14.25 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC----HHCCCCCHHH
Q ss_conf 3410344554420244-035510113578657984003698999965998999985----3308888899
Q gi|254780453|r 161 CSPQEVRMVREIVGHN-MVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR----PIVRAADPVS 225 (238)
Q Consensus 161 ~s~~ei~~ir~~~~~~-~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR----~I~~a~dP~~ 225 (238)
|.|..-.+..+.+.+. ..++..|-+-+.-.+| +....-|++-+||.+.++- ++|. +||.+
T Consensus 110 ~e~y~~~rA~~~LekG~VVIfagGTGnP~fTTD----taAaLrA~Ei~Ad~lL~at~~VDGVYd-~DP~k 174 (247)
T PRK12443 110 AEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTD----YPSVQRAIEMNSDAILVAKQGVDGVFT-SDPKH 174 (247)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC----HHHHHHHHHHCCHHHHCCCCCCCCCCC-CCCCC
T ss_conf 677778999999736978999788788752043----999999988286133210566577646-89889
No 426
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=25.99 E-value=49 Score=14.17 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCH------------------HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 04246789877652156750899724604------------------677776530235531046664147776887652
Q gi|254780453|r 73 FDIGSSVTAAIEHIANMGVAMLTVHAYPQ------------------TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRES 134 (238)
Q Consensus 73 ~DIpnTv~~~v~~~~~~g~d~iTvH~~~~------------------~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~ 134 (238)
+.-|..+..+++.+.++|++.+-+...+. .+.+.+++.++.-..=+-||+=+= +
T Consensus 71 G~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~R--------l 142 (312)
T PRK10550 71 GQYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR--------L 142 (312)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEE--------C
T ss_conf 78889999999999976999662547999789668992685328977999999999974587899547753--------5
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCC-----------CC-H--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCH
Q ss_conf 012104887654454211024431113-----------41-0--344554420244035510113578657984003698
Q gi|254780453|r 135 GYEKDISDMVRMRAVQARDIGMGGIVC-----------SP-Q--EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATP 200 (238)
Q Consensus 135 g~~~~~~~~v~~~a~~a~~~g~~GvV~-----------s~-~--ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp 200 (238)
|+... +....++....++|++.+.. ++ + .++.+++.+ + .|=|+ +++ +.|+
T Consensus 143 G~~~~--~~~~e~~~~~~~~G~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~~-~-----iPvi~--NGd------I~s~ 206 (312)
T PRK10550 143 GWDSG--DRKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGEIRQRL-T-----IPVIA--NGE------IWDW 206 (312)
T ss_pred CCCCC--CHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHC-C-----CCEEE--ECC------CCCH
T ss_conf 89986--3199999999973998799905526535899834899999999748-9-----98997--079------5999
Q ss_pred HHHHH----CCCCEEEECCHHCCCCC
Q ss_conf 99996----59989999853308888
Q gi|254780453|r 201 ETALK----YGASHIVVSRPIVRAAD 222 (238)
Q Consensus 201 ~~Ai~----~GaD~iVVGR~I~~a~d 222 (238)
.+|.+ .|+|-+-+||+......
T Consensus 207 ~d~~~~~~~tg~dgvMiGRgal~nP~ 232 (312)
T PRK10550 207 QSAQQCMAISGCDAVMIGRGALNIPN 232 (312)
T ss_pred HHHHHHHHHHCCCEEEECHHHHHCCH
T ss_conf 99999987148999996585530977
No 427
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=25.82 E-value=39 Score=14.79 Aligned_cols=26 Identities=38% Similarity=0.682 Sum_probs=19.3
Q ss_pred CEECCHHHHHH-------CCCCEEEECCHHCCC
Q ss_conf 00369899996-------599899998533088
Q gi|254780453|r 195 KRFATPETALK-------YGASHIVVSRPIVRA 220 (238)
Q Consensus 195 ~r~~tp~~Ai~-------~GaD~iVVGR~I~~a 220 (238)
.|+..|.||+- .||...||||-=..-
T Consensus 258 MRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGv 290 (397)
T COG2046 258 MRYAGPREALLHAIIRKNYGCTHFIVGRDHAGV 290 (397)
T ss_pred HHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 640483788899999850597026656777876
No 428
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=25.79 E-value=40 Score=14.72 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECC
Q ss_conf 344554420244035510113578657984003698999965998999985
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSR 215 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR 215 (238)
.++.+|+++.. .|||-+. +...|+-|-||-+| .|.|-+-|||
T Consensus 269 ~~e~~~E~Lk~-----ApGV~~~--D~P~~~~Yp~P~~A--~G~D~VfVGR 310 (350)
T TIGR01296 269 SPEDVREVLKN-----APGVVVI--DDPSQNLYPTPLEA--VGEDEVFVGR 310 (350)
T ss_pred CHHHHHHHHCC-----CCEEEEE--ECCCCCCCCCCHHE--ECCCCEEEEE
T ss_conf 88899997347-----9867998--76888778883101--0257156754
No 429
>PRK13671 hypothetical protein; Provisional
Probab=25.74 E-value=49 Score=14.14 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=6.2
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 877652156750899
Q gi|254780453|r 81 AAIEHIANMGVAMLT 95 (238)
Q Consensus 81 ~~v~~~~~~g~d~iT 95 (238)
++|.-+..+|+|.+.
T Consensus 84 gaV~lL~~lgvd~l~ 98 (298)
T PRK13671 84 GAIKKLNKHKIDKLI 98 (298)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999986999799
No 430
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=25.60 E-value=38 Score=14.89 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.0
Q ss_pred HHHHHHCCCCCEEEEEECC
Q ss_conf 8776521567508997246
Q gi|254780453|r 81 AAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 81 ~~v~~~~~~g~d~iTvH~~ 99 (238)
=+-+.+.++|+|++|+|..
T Consensus 155 WArk~Vk~fgadmvTiHlI 173 (403)
T COG2069 155 WARKCVKKFGADMVTIHLI 173 (403)
T ss_pred HHHHHHHHHCCCEEEEEEE
T ss_conf 9999999848765999961
No 431
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.45 E-value=50 Score=14.11 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=36.4
Q ss_pred CEEEECHHHHH-----CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 28998689984-----2558999999851546678776404246789877652156750899724
Q gi|254780453|r 39 SFYKIGYHLSF-----SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 39 ~~iKig~~l~~-----~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
.++=+|.++.. ..+.-+.++|.+.|+.+..=.=..|=+.....++..+.+. +|++.+.+
T Consensus 3 ~iI~iG~ElL~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~D~~~~I~~al~~~~~~-~d~vi~tG 66 (170)
T cd00885 3 EIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASER-ADLVITTG 66 (170)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCEEEEEC
T ss_conf 99998235406702332499999999977982668999398899999999999741-99999947
No 432
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=25.35 E-value=50 Score=14.09 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHCCCCCEEEECH
Q ss_conf 98999999997388522899868
Q gi|254780453|r 23 TVKEAERIVSILSDTVSFYKIGY 45 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~i~~iKig~ 45 (238)
+.+....+.+.+.|-|--+|+|.
T Consensus 46 s~ea~e~L~ea~APpir~V~iG~ 68 (454)
T PRK04165 46 SEEAKEKLDEALAPPVREVKIGT 68 (454)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC
T ss_conf 88999999861499804898658
No 433
>pfam01959 DHQS 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides.
Probab=25.32 E-value=50 Score=14.09 Aligned_cols=62 Identities=13% Similarity=0.290 Sum_probs=30.4
Q ss_pred CEEEEEECCCH---HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 50899724604---677776530235531046664147776887652012104887654454211024431113410344
Q gi|254780453|r 91 VAMLTVHAYPQ---TMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVR 167 (238)
Q Consensus 91 ~d~iTvH~~~~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~ 167 (238)
++++.+...+- -++-.+........+++++. .+ .++ -+.+-.+.+-|.||++.++.+..
T Consensus 86 ~~~viv~~~DW~iIPlENlIA~~~g~~t~i~a~v--~~--------------~~e--A~~a~~~LE~GvDgVvl~~~~~~ 147 (343)
T pfam01959 86 ADYVIVEGRDWTIIPLENLIARLQGSETKVIAVV--KS--------------AEE--AKLALETLEKGVDGVLLDPDDPN 147 (343)
T ss_pred CCEEEEECCCCCEECHHHHHHHHCCCCCEEEEEE--CC--------------HHH--HHHHHHHHCCCCCEEEECCCCHH
T ss_conf 9879997688949538999887538995599991--89--------------999--99999886148768998899989
Q ss_pred HHH
Q ss_conf 554
Q gi|254780453|r 168 MVR 170 (238)
Q Consensus 168 ~ir 170 (238)
.++
T Consensus 148 ei~ 150 (343)
T pfam01959 148 EIK 150 (343)
T ss_pred HHH
T ss_conf 999
No 434
>PRK13670 hypothetical protein; Provisional
Probab=25.31 E-value=50 Score=14.09 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=13.0
Q ss_pred HHHHHHH--HHHHHCCCC--CEEEEE
Q ss_conf 2467898--776521567--508997
Q gi|254780453|r 75 IGSSVTA--AIEHIANMG--VAMLTV 96 (238)
Q Consensus 75 IpnTv~~--~v~~~~~~g--~d~iTv 96 (238)
-||...+ +++++..++ +..+||
T Consensus 159 ~pNnILgieY~kai~~~~s~i~p~~I 184 (390)
T PRK13670 159 TPNNILGLAYAKAILKLGSNIKLHTI 184 (390)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 98379999999999973999758876
No 435
>KOG2334 consensus
Probab=25.17 E-value=51 Score=14.07 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=55.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECH----HHHHCCCH------------HHHHHHHHHCHHHHHHHHH-
Q ss_conf 578988999607998999999997388522899868----99842558------------9999998515466787764-
Q gi|254780453|r 10 DEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGY----HLSFSGGL------------ELARDLISDGKSVFLDMKL- 72 (238)
Q Consensus 10 ~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~----~l~~~~G~------------~~i~~l~k~~~~If~D~K~- 72 (238)
.++++|++-+-+.+.+.+++.+..+.+.+.++-++. +|-...|+ .++..|.+.. .+-.+-|.
T Consensus 79 ~e~~rlilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~-~vpvtckIR 157 (477)
T KOG2334 79 AENSRLILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGN-KVPVTCKIR 157 (477)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCC-CCCCEEEEE
T ss_conf 2318079983488688999999976224445300379997542134778501068888999999998457-665146898
Q ss_pred -CCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -042467898776521567508997246
Q gi|254780453|r 73 -FDIGSSVTAAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 73 -~DIpnTv~~~v~~~~~~g~d~iTvH~~ 99 (238)
-|-+.--..-++.+...|+..+|||+-
T Consensus 158 ~L~s~edtL~lv~ri~~tgi~ai~vh~r 185 (477)
T KOG2334 158 LLDSKEDTLKLVKRICATGIAAITVHCR 185 (477)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4478420799999999628756999864
No 436
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=24.63 E-value=52 Score=14.01 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=56.2
Q ss_pred HHHHHHHCCCCCEEEEEECCC----HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHH-HHHC
Q ss_conf 987765215675089972460----46777765302355310466641477768876520121048876544542-1102
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYP----QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQ-ARDI 154 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~----~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~-a~~~ 154 (238)
..+++.+.+++++++=|++.. ..++...+ .+..++.= |-+.. +.|+ .+.+..+... ..+.
T Consensus 79 ~~s~~~l~~l~~~~~KIaS~d~~n~~Li~~i~k----~~kpiiiS---TG~s~--~~eI------~~~i~~~~~~~~~~i 143 (240)
T pfam03102 79 LESVDFLESLGVPAYKIASGEITNLPLLRYIAK----TGKPVILS---TGMAT--LEEI------EEAVETLREAGNEDI 143 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH----CCCCEEEE---CCCCC--HHHH------HHHHHHHHHCCCCCC
T ss_conf 999998875588869989886465899999997----39968995---79888--9999------999999996345677
Q ss_pred ----CCCCCCCCCHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC-----
Q ss_conf ----44311134103-----4455442024403551011357865798400369899996599899998533088-----
Q gi|254780453|r 155 ----GMGGIVCSPQE-----VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA----- 220 (238)
Q Consensus 155 ----g~~GvV~s~~e-----i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a----- 220 (238)
.+...=|++.+ ++.+++.++ .| ||......+ +..|--|+..||.+|= +-+|-.
T Consensus 144 ~llhCvS~YPt~~~~~nL~~I~~lk~~f~------~~-iG~SdHs~g----~~~~~~A~~~GA~iiE--KH~tl~~~~~g 210 (240)
T pfam03102 144 TLLHCTSEYPAPFEDVNLRAIPTLKEAFG------VP-VGYSDHTLG----IEAPIAAVALGASVIE--KHFTLDRNLPG 210 (240)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC------CC-EEECCCCCC----CHHHHHHHHCCCCEEE--EEEECCCCCCC
T ss_conf 68665888999746600999889998679------96-884798897----0777999982993999--87655899999
Q ss_pred ------CCHHHHHHHHHHHHHH
Q ss_conf ------8889999999998665
Q gi|254780453|r 221 ------ADPVSAAQEFQRAISL 236 (238)
Q Consensus 221 ------~dP~~aa~~i~~~i~~ 236 (238)
-+|. ..+++.+.|+.
T Consensus 211 ~D~~~Sl~~~-e~~~~v~~ir~ 231 (240)
T pfam03102 211 PDHKASLEPD-ELKELVKDIRN 231 (240)
T ss_pred CCHHHCCCHH-HHHHHHHHHHH
T ss_conf 9556439999-99999999999
No 437
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=24.61 E-value=52 Score=14.01 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=16.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHCCCC-CCEEEEEEECCCCH
Q ss_conf 567508997246046777765302355-31046664147776
Q gi|254780453|r 88 NMGVAMLTVHAYPQTMRSAVSVVRDTG-ICLLAVTVLTSMDD 128 (238)
Q Consensus 88 ~~g~d~iTvH~~~~~l~~~~~~~~~~~-~~il~Vt~LTS~~~ 128 (238)
.-+++++.||-.|.+-...++...+.+ ..||| ||.+.
T Consensus 646 ~E~~~GVIVq~GGQtp~nlA~~L~~~GG~~iLG----TS~~~ 683 (1089)
T TIGR01369 646 LEKPEGVIVQFGGQTPLNLAKELEEAGGVPILG----TSPES 683 (1089)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEC----CCHHH
T ss_conf 058667999748732678999999708931736----88578
No 438
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.56 E-value=52 Score=14.00 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCEEEECHHHHH-----CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 228998689984-----2558999999851546678776404246789877652156750899724
Q gi|254780453|r 38 VSFYKIGYHLSF-----SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 38 i~~iKig~~l~~-----~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
..++=||.++.. .+..-+-++|.+.|+.+..-.-..|=++-...+++.+.+. .|++.+.+
T Consensus 6 A~II~IG~ElL~G~i~dtNs~~la~~L~~~G~~v~~~~~V~D~~~~I~~~l~~a~~r-~d~Vi~tG 70 (264)
T PRK01215 6 AWIITVGNELLIGRTVNTNASWIARRLTYLGYSVRRIVVVPDDEEEIVEAFREAIGR-ADVVVSTG 70 (264)
T ss_pred EEEEEECCCCCCCCEECHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHC-CCEEEEEC
T ss_conf 999998243106610516799999999977993889999289899999999999743-89999948
No 439
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=23.76 E-value=54 Score=13.90 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=99.5
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECHHHH-HCCC------------HHHHHHHHH-HCHHHHHH--HH
Q ss_conf 11578988999607998999999997388522899868998-4255------------899999985-15466787--76
Q gi|254780453|r 8 DVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLS-FSGG------------LELARDLIS-DGKSVFLD--MK 71 (238)
Q Consensus 8 ~~~kk~~livALD~~~~~e~l~l~~~l~~~i~~iKig~~l~-~~~G------------~~~i~~l~k-~~~~If~D--~K 71 (238)
++.+++.++++.-.-|.--+ +++++.+= -..+--|..+- .+.| ...++.+.. .+.|++.| -=
T Consensus 11 ~ll~~~~~l~~pg~~D~lsA-~l~e~aGF-~a~~~sG~~~saa~lG~PD~gl~t~~e~~~~~~~I~~a~~lPviaD~DtG 88 (292)
T PRK11320 11 AALAAEKPLQIVGTINAYHA-LLAERAGF-QAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTG 88 (292)
T ss_pred HHHCCCCCEEECCCCCHHHH-HHHHHCCC-CEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 99728994895578888999-99998599-99996429998885699984547788999999999835588879877677
Q ss_pred HCCHHHHHHHHHHHHCCCCCEEEEEEC--CC---------------H---HHHHHHHHHCCCCCCEEEEEEECCCCHHHH
Q ss_conf 404246789877652156750899724--60---------------4---677776530235531046664147776887
Q gi|254780453|r 72 LFDIGSSVTAAIEHIANMGVAMLTVHA--YP---------------Q---TMRSAVSVVRDTGICLLAVTVLTSMDDFDL 131 (238)
Q Consensus 72 ~~DIpnTv~~~v~~~~~~g~d~iTvH~--~~---------------~---~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l 131 (238)
|++.. .|...++.+...|+..+.+-= .| + -+++++++..+.+..|++=| +. +
T Consensus 89 yG~~~-nv~rtV~~~e~aGvagi~IEDq~~pKrcgh~~gk~lv~~~e~~~KI~AA~~ar~~~df~IiART-----DA--~ 160 (292)
T PRK11320 89 FGGAF-NIARTIKSMIKAGAAAVHIEDQVGQKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-----DA--L 160 (292)
T ss_pred CCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC-----CC--C
T ss_conf 88278-8999999999749968984155566556866675333499999999999985679985999953-----63--3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCC-C---CCHHHHHHHHHHCCCCEE--EEECCCCCCCCCCCCCEECCHHHHHH
Q ss_conf 65201210488765445421102443111-3---410344554420244035--51011357865798400369899996
Q gi|254780453|r 132 RESGYEKDISDMVRMRAVQARDIGMGGIV-C---SPQEVRMVREIVGHNMVI--VTPGIRMLGSATDGQKRFATPETALK 205 (238)
Q Consensus 132 ~~~g~~~~~~~~v~~~a~~a~~~g~~GvV-~---s~~ei~~ir~~~~~~~~~--itPGI~~~~~~~~dq~r~~tp~~Ai~ 205 (238)
....+++ ..++++.-.++|.|++- - ++.|++.+++.++ -.+. +++| +.+ -..|+.+.-+
T Consensus 161 ----~~~glde-Ai~Ra~aY~eAGAD~if~ea~~~~ee~~~~~~~~~-~Pll~n~~e~-----g~t----P~~s~~el~~ 225 (292)
T PRK11320 161 ----AVEGLDA-AIERAQAYVEAGADMIFPEAITELDMYRRFADAVK-VPILANITEF-----GAT----PLFTTEELAS 225 (292)
T ss_pred ----CCCCHHH-HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCC-CCEEEEECCC-----CCC----CCCCHHHHHH
T ss_conf ----4588699-99999999977998994178999999999999779-9989984899-----999----8879999997
Q ss_pred CCCCEEEECCHHCC
Q ss_conf 59989999853308
Q gi|254780453|r 206 YGASHIVVSRPIVR 219 (238)
Q Consensus 206 ~GaD~iVVGR~I~~ 219 (238)
.|-+.+|-.-.-.+
T Consensus 226 lG~~~viyp~~~lr 239 (292)
T PRK11320 226 AGVAMVLYPLSAFR 239 (292)
T ss_pred CCCCEEEECCHHHH
T ss_conf 79989998869999
No 440
>PRK06242 flavodoxin; Provisional
Probab=23.66 E-value=54 Score=13.89 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999866
Q gi|254780453|r 224 VSAAQEFQRAIS 235 (238)
Q Consensus 224 ~~aa~~i~~~i~ 235 (238)
.+.|++|.+.|.
T Consensus 136 l~~A~~Fa~~i~ 147 (150)
T PRK06242 136 LENAKEFALNLK 147 (150)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
No 441
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.57 E-value=54 Score=13.88 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=40.5
Q ss_pred EEEECHHHHHCCCHHHHHHHHHHCHHHHHHHH-HCC--HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 89986899842558999999851546678776-404--246789877652156750899724604677776530235531
Q gi|254780453|r 40 FYKIGYHLSFSGGLELARDLISDGKSVFLDMK-LFD--IGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGIC 116 (238)
Q Consensus 40 ~iKig~~l~~~~G~~~i~~l~k~~~~If~D~K-~~D--IpnTv~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~ 116 (238)
++|.+-+-......++.++|.++|..++++-. ..+ .|.. .... ...+|++.+-+..|++-.+.+.....+.-
T Consensus 9 V~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~----~~~~-~~~~Dlvi~lGGDGT~L~aar~~~~~~iP 83 (304)
T PRK02645 9 AYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVF----LASA-EELPDLAIVLGGDGTVLAAARHLAPHDIP 83 (304)
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC----CCCC-CCCCCEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 985899999999999999999888999984443444777620----0144-66888999978688999999985426998
Q ss_pred EEEEEE
Q ss_conf 046664
Q gi|254780453|r 117 LLAVTV 122 (238)
Q Consensus 117 il~Vt~ 122 (238)
++||-.
T Consensus 84 ilGiN~ 89 (304)
T PRK02645 84 ILSFNV 89 (304)
T ss_pred EEEEEC
T ss_conf 899824
No 442
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=23.46 E-value=54 Score=13.87 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=14.9
Q ss_pred EECCHHHHHHCC-CCEEE
Q ss_conf 036989999659-98999
Q gi|254780453|r 196 RFATPETALKYG-ASHIV 212 (238)
Q Consensus 196 r~~tp~~Ai~~G-aD~iV 212 (238)
+++||+||++.| +|-||
T Consensus 162 ~~lta~EA~~~GliD~Ii 179 (182)
T pfam00574 162 TFMSAEEAKEYGLIDEVI 179 (182)
T ss_pred CCCCHHHHHHCCCCCEEC
T ss_conf 324699999839986850
No 443
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=23.38 E-value=55 Score=13.86 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCEEEEEEECCCCH-------HHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCCC--CCCHH-HHHHHHHHCCCCEEEEE
Q ss_conf 31046664147776-------887652012104--88765445421102443111--34103-44554420244035510
Q gi|254780453|r 115 ICLLAVTVLTSMDD-------FDLRESGYEKDI--SDMVRMRAVQARDIGMGGIV--CSPQE-VRMVREIVGHNMVIVTP 182 (238)
Q Consensus 115 ~~il~Vt~LTS~~~-------~~l~~~g~~~~~--~~~v~~~a~~a~~~g~~GvV--~s~~e-i~~ir~~~~~~~~~itP 182 (238)
.+++||..|--.-. .+++++|...-+ -+.-..-+..|.++|+|+|+ |.|++ ++.+|+.-.+.-++-..
T Consensus 436 ~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK~~~I~~eQ~~grlVAMt 515 (681)
T COG2216 436 GRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDKLALIRQEQAEGRLVAMT 515 (681)
T ss_pred CEEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999998643135348999999996597599980897777999998718014655289588999999887459589980
Q ss_pred CC
Q ss_conf 11
Q gi|254780453|r 183 GI 184 (238)
Q Consensus 183 GI 184 (238)
|=
T Consensus 516 GD 517 (681)
T COG2216 516 GD 517 (681)
T ss_pred CC
T ss_conf 79
No 444
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=23.37 E-value=55 Score=13.85 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCC--CCCCEECCHHHHHHCCCCEEEEC
Q ss_conf 344554420244035510113578657--98400369899996599899998
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSAT--DGQKRFATPETALKYGASHIVVS 214 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~~--~dq~r~~tp~~Ai~~GaD~iVVG 214 (238)
+++++|+ ..+++++++=-+.+.... ..|+ ...+..++.|||.||=.
T Consensus 165 ~i~~~k~--~~D~vIv~~HwG~E~~~~p~~~q~--~~a~~lid~GaD~IiGh 212 (239)
T smart00854 165 DIARARK--KADVVIVSLHWGVEYQYEPTDEQR--ELAHALIDAGADVVIGH 212 (239)
T ss_pred HHHHHHH--CCCEEEEEEECCCCCCCCCCHHHH--HHHHHHHHCCCCEEEEC
T ss_conf 9998852--799999993015778779999999--99999997699999928
No 445
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.22 E-value=55 Score=13.83 Aligned_cols=88 Identities=11% Similarity=0.178 Sum_probs=46.1
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 21567508997246046777765302355310466641477768876520121048876544542110244311134103
Q gi|254780453|r 86 IANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQE 165 (238)
Q Consensus 86 ~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~e 165 (238)
+...|.+.+..+. .......++..++.++.++|+|.+++.....+ ..
T Consensus 23 l~~~g~~v~~lg~-~~~~e~~v~~~~~~~~dvVgiS~~~~~~~~~~--------------------------------~~ 69 (125)
T cd02065 23 LRDNGFEVIDLGV-DVPPEEIVEAAKEEDADVVGLSALSTTHMEAM--------------------------------KL 69 (125)
T ss_pred HHHCCCEEEECCC-CCCHHHHHHHHHHHCCCEEEEECCHHHHHHHH--------------------------------HH
T ss_conf 9978998998999-88999999999860899999852113018999--------------------------------99
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCC
Q ss_conf 445544202440355101135786579840036989999659989999853308
Q gi|254780453|r 166 VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 166 i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~ 219 (238)
+..+++..+.+..++..|..+.. .|++ ..+|++++|-+-+-
T Consensus 70 ~~~~~~~~~~~v~vv~GG~~~t~----------~~~~---~~~d~v~~Gege~~ 110 (125)
T cd02065 70 VIEALKELGIDIPVVVGGAHPTA----------DPEE---PKVDAVVIGEGEYA 110 (125)
T ss_pred HHHHHHHCCCCCEEEECCCCCCC----------CHHH---HCCCEEEECCEEEE
T ss_conf 99999967998759975887986----------7355---27675757784582
No 446
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=23.09 E-value=55 Score=13.82 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHH--HHHHHCCCC--CEEEEE
Q ss_conf 2467898--776521567--508997
Q gi|254780453|r 75 IGSSVTA--AIEHIANMG--VAMLTV 96 (238)
Q Consensus 75 IpnTv~~--~v~~~~~~g--~d~iTv 96 (238)
-||...+ +++++..++ +..+||
T Consensus 160 ~PNnILgieY~kai~~~~s~i~p~~I 185 (389)
T pfam05636 160 TPNNILGLEYAKAIKKAGSNIKLYTI 185 (389)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98089999999999970989879875
No 447
>TIGR01344 malate_syn_A malate synthase A; InterPro: IPR006252 These sequences represent plant malate synthase and one of two bacterial forms, designated malate synthase A. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle.
Probab=22.91 E-value=56 Score=13.80 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCEEEEC-HHHHHCCCHHHHHHHHHHCHHHHH-HHHH--CCHHHHHH---HHHHHHCCCCCEEEEEEC
Q ss_conf 9999999738852289986-899842558999999851546678-7764--04246789---877652156750899724
Q gi|254780453|r 26 EAERIVSILSDTVSFYKIG-YHLSFSGGLELARDLISDGKSVFL-DMKL--FDIGSSVT---AAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 26 e~l~l~~~l~~~i~~iKig-~~l~~~~G~~~i~~l~k~~~~If~-D~K~--~DIpnTv~---~~v~~~~~~g~d~iTvH~ 98 (238)
|.-+|+=+|++++.++=.| |+.+ .++||.|++.|....+ |+.. +|=|-=.+ .=|+-+...| +||
T Consensus 241 eMdEILyeLrEH~~GLNCGRWDYI----FS~IK~L~~~G~~~VLPDR~~vTM~kpFl~AYs~lLI~TCHRRG-----ahA 311 (522)
T TIGR01344 241 EMDEILYELREHSSGLNCGRWDYI----FSFIKTLRKAGPEFVLPDRDAVTMDKPFLNAYSKLLIQTCHRRG-----AHA 311 (522)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC-----CCE
T ss_conf 357899988763201366246788----88988764168851468897035484768899999974012168-----620
Q ss_pred CCHH
Q ss_conf 6046
Q gi|254780453|r 99 YPQT 102 (238)
Q Consensus 99 ~~~~ 102 (238)
-|||
T Consensus 312 mGGM 315 (522)
T TIGR01344 312 MGGM 315 (522)
T ss_pred ECCC
T ss_conf 0520
No 448
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.89 E-value=56 Score=13.79 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCEECCHHHHHHCCCCEEEE
Q ss_conf 34455442024403551011357865--79840036989999659989999
Q gi|254780453|r 165 EVRMVREIVGHNMVIVTPGIRMLGSA--TDGQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 165 ei~~ir~~~~~~~~~itPGI~~~~~~--~~dq~r~~tp~~Ai~~GaD~iVV 213 (238)
+++.+|+. .+++++++=-+.+... ...|+ ...+..++.|||.||=
T Consensus 163 ~i~~~k~~--~D~vIv~~HwG~E~~~~p~~~q~--~~a~~lidaGaDlIiG 209 (237)
T pfam09587 163 DIRRAKKK--ADIVIVSLHWGVEYQYEPTPEQR--ELAHALIDAGADLVIG 209 (237)
T ss_pred HHHHHHCC--CCEEEEECCCCCCCCCCCCHHHH--HHHHHHHHCCCCEEEE
T ss_conf 99987507--99999987756678769999999--9999999779999991
No 449
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.83 E-value=56 Score=13.79 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=12.5
Q ss_pred HHHHHCCCCEEEECCHHCC
Q ss_conf 9999659989999853308
Q gi|254780453|r 201 ETALKYGASHIVVSRPIVR 219 (238)
Q Consensus 201 ~~Ai~~GaD~iVVGR~I~~ 219 (238)
.+.+.+|||.+=|+-+++.
T Consensus 259 ~e~i~aGA~~Vqv~Tal~~ 277 (289)
T cd02810 259 LEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHCCCCHHHHHHHHHH
T ss_conf 9999849979999899997
No 450
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.60 E-value=57 Score=13.76 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=58.0
Q ss_pred ECCCHHHHHH----HHHHHCCCCCEEEECHHHHHCC-----CHHHHHHHHHHCHHHHH--HHHHCCHHHHHHHHHHHHCC
Q ss_conf 0799899999----9997388522899868998425-----58999999851546678--77640424678987765215
Q gi|254780453|r 20 DLPTVKEAER----IVSILSDTVSFYKIGYHLSFSG-----GLELARDLISDGKSVFL--DMKLFDIGSSVTAAIEHIAN 88 (238)
Q Consensus 20 D~~~~~e~l~----l~~~l~~~i~~iKig~~l~~~~-----G~~~i~~l~k~~~~If~--D~K~~DIpnTv~~~v~~~~~ 88 (238)
|.+=++-+++ -+..-+-.+.+++=|++=++.. ..+-++.+...+=.++- =.|..+-+......++.+.+
T Consensus 13 ~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LgtsR~~~~~~~~~~~~~~~~l~~ 92 (323)
T PRK03202 13 DAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGLLEGDIIDLDRASVSDLINRGGTALGSARYPEFKLEEGRAKAIENLKK 92 (323)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 86778999999999999789999999167788648985769999999998479867420488877788899999999998
Q ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 67508997246046777765302355310466
Q gi|254780453|r 89 MGVAMLTVHAYPQTMRSAVSVVRDTGICLLAV 120 (238)
Q Consensus 89 ~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~V 120 (238)
+++|.+.+-+..+++..+...+++.+..+++|
T Consensus 93 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vigI 124 (323)
T PRK03202 93 HGIDALVVIGGDGSYDGAKKLSEEYGIPCIGI 124 (323)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 29999999379469999999984379748972
No 451
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=22.58 E-value=57 Score=13.76 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=34.9
Q ss_pred CCCCCCCCH-----HHHHHHHHHCCCCEEEEEC------CCCCCCCCC----CCCEECCHHHHHHCCCCEEEE
Q ss_conf 431113410-----3445544202440355101------135786579----840036989999659989999
Q gi|254780453|r 156 MGGIVCSPQ-----EVRMVREIVGHNMVIVTPG------IRMLGSATD----GQKRFATPETALKYGASHIVV 213 (238)
Q Consensus 156 ~~GvV~s~~-----ei~~ir~~~~~~~~~itPG------I~~~~~~~~----dq~r~~tp~~Ai~~GaD~iVV 213 (238)
.-=||.||. |+..+|..+..+++.++.| ++..+.-.+ =-|-..+..-|-..+||.+++
T Consensus 160 ~RRVVpSP~P~~IvE~~~I~~Lv~~g~iVIa~GGGGIPVv~~~g~l~GveAVIDKD~aaa~LA~~l~Ad~liI 232 (313)
T PRK12454 160 YRRVVPSPDPLGIVEIETIKMLVENGVIVIAAGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred EEEECCCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCCEEECCCHHHHHHHHHHCCCEEEE
T ss_conf 5886179999427528999999978988999489856668559827565204445188999999709998999
No 452
>PRK06197 short chain dehydrogenase; Provisional
Probab=22.46 E-value=30 Score=15.52 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=9.9
Q ss_pred EEEEECCCHHHHHHHHHHH
Q ss_conf 9996079989999999973
Q gi|254780453|r 16 VVGLDLPTVKEAERIVSIL 34 (238)
Q Consensus 16 ivALD~~~~~e~l~l~~~l 34 (238)
++.||+.+.+...++++++
T Consensus 71 ~~~lDLssl~sV~~~a~~~ 89 (306)
T PRK06197 71 LQELDLASLASVRAAADAL 89 (306)
T ss_pred EEECCCHHHHHHHHHHHHH
T ss_conf 9976643077899999999
No 453
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.05 E-value=58 Score=13.69 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCCCCCCCCEEEEEECCC-----HHHHHHHHHHHCCCCCEEEECHHHHHCCC--HHHHHHHHHHCHHHHHHHHHCCHHHH
Q ss_conf 231157898899960799-----89999999973885228998689984255--89999998515466787764042467
Q gi|254780453|r 6 IIDVDEKKRLVVGLDLPT-----VKEAERIVSILSDTVSFYKIGYHLSFSGG--LELARDLISDGKSVFLDMKLFDIGSS 78 (238)
Q Consensus 6 ~~~~~kk~~livALD~~~-----~~e~l~l~~~l~~~i~~iKig~~l~~~~G--~~~i~~l~k~~~~If~D~K~~DIpnT 78 (238)
...++++.+|++-=|++- ..=+.+.++.++-.-..|-|-..+-..|| .+.++++.+.+..++. ..|-|-|
T Consensus 62 ~~Ai~~~ekI~I~GDYDvDGiTstaiL~~~l~~~g~~~v~y~IP~R~~eGYGl~~~~i~~~~~~g~~LiI---TvDcGi~ 138 (574)
T PRK11070 62 YNAFREGTRIIVVGDFDADGATSTALSVLALRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV---TVDNGIS 138 (574)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE---EECCCHH
T ss_conf 9999879949999347860679999999999986997169979898767879799999999965999999---9578530
Q ss_pred HHHHHHHHCCCCCEEEEE
Q ss_conf 898776521567508997
Q gi|254780453|r 79 VTAAIEHIANMGVAMLTV 96 (238)
Q Consensus 79 v~~~v~~~~~~g~d~iTv 96 (238)
...+++.+.++|+|.+..
T Consensus 139 a~e~i~~a~~~GidvIVt 156 (574)
T PRK11070 139 SHAGVAHAKSLGIPVIVT 156 (574)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 299999999779999997
No 454
>PRK10128 putative aldolase; Provisional
Probab=21.70 E-value=59 Score=13.64 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEE-ECC-CHHHHHHHHHHC
Q ss_conf 42467898776521567508997-246-046777765302
Q gi|254780453|r 74 DIGSSVTAAIEHIANMGVAMLTV-HAY-PQTMRSAVSVVR 111 (238)
Q Consensus 74 DIpnTv~~~v~~~~~~g~d~iTv-H~~-~~~l~~~~~~~~ 111 (238)
-+|..-...++.+.+.|++.+.+ |.. .+-.+++++..+
T Consensus 57 Rv~~~~~~~i~r~LD~Ga~GiivP~V~tae~A~~~V~~~k 96 (250)
T PRK10128 57 RPVEGSKALIKQVLDIGAQTLLIPMVDTAEQARQVVSATR 96 (250)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 8589998899999837898778547486999999999851
No 455
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=21.39 E-value=60 Score=13.60 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=7.2
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 99965998999985
Q gi|254780453|r 202 TALKYGASHIVVSR 215 (238)
Q Consensus 202 ~Ai~~GaD~iVVGR 215 (238)
.|+.+|||.+=+|.
T Consensus 359 KAlAaGA~aVMlGs 372 (476)
T TIGR01302 359 KALAAGADAVMLGS 372 (476)
T ss_pred HHHHHCCCEEHHCC
T ss_conf 99981677220234
No 456
>TIGR03093 SASP_sspL small, acid-soluble spore protein L. subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspL.
Probab=21.28 E-value=44 Score=14.45 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=15.3
Q ss_pred EEECCCCCCCCCCCCCEECCHHHHHHC
Q ss_conf 510113578657984003698999965
Q gi|254780453|r 180 VTPGIRMLGSATDGQKRFATPETALKY 206 (238)
Q Consensus 180 itPGI~~~~~~~~dq~r~~tp~~Ai~~ 206 (238)
++||+.+||.. +..+...|+.-+++
T Consensus 4 ~~~gVnPQG~~--e~~~~~dPks~LE~ 28 (36)
T TIGR03093 4 LTGGVNPQGDS--EDNAHQDPKSELEN 28 (36)
T ss_pred CCCCCCCCCCC--CCCCCCCHHHHHHH
T ss_conf 45775888875--42233381889988
No 457
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.19 E-value=60 Score=13.57 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCCCCCE-EEE--EECCCHHHHHHHHHHHCC-----CCC-EEEECHH--------HHHCCC-HHHHHHH---HH-HCHHH
Q ss_conf 1578988-999--607998999999997388-----522-8998689--------984255-8999999---85-15466
Q gi|254780453|r 9 VDEKKRL-VVG--LDLPTVKEAERIVSILSD-----TVS-FYKIGYH--------LSFSGG-LELARDL---IS-DGKSV 66 (238)
Q Consensus 9 ~~kk~~l-ivA--LD~~~~~e~l~l~~~l~~-----~i~-~iKig~~--------l~~~~G-~~~i~~l---~k-~~~~I 66 (238)
+-..+++ ++| |=..+.+.++++++.++. .+. +||-++. .|-..| .+++++| ++ ++.+|
T Consensus 5 ig~~~pl~~IaGPCsvEs~e~~~~~A~~lk~~~~~~~~~~ifK~sf~KaNRTsp~sf~G~G~e~gL~~l~~vk~~~glpi 84 (264)
T PRK05198 5 VGNDLPFVLIAGPCVIESRDLALEIAEHLKEITEKLGIPFVFKASFDKANRSSIHSYRGPGLEEGLKILAEVKETFGVPV 84 (264)
T ss_pred ECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 78998048994778203999999999999998875499848536778666788867678668889899999999849964
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 78776404246789877652156750899724
Q gi|254780453|r 67 FLDMKLFDIGSSVTAAIEHIANMGVAMLTVHA 98 (238)
Q Consensus 67 f~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~ 98 (238)
.-| .|| ...++.+.+. +|++-|-+
T Consensus 85 ~Te--V~~-----~~~~e~~~~~-vDilQIgA 108 (264)
T PRK05198 85 LTD--VHE-----PEQAAPVAEV-VDVLQIPA 108 (264)
T ss_pred CEE--ECC-----HHHHHHHHHH-HHHHEECH
T ss_conf 014--678-----9999999834-02320123
No 458
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=21.08 E-value=61 Score=13.56 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHCHHHHHHHHH--CCHHHHHHHHHH-HHCCCCCEEEEEE
Q ss_conf 589999998515466787764--042467898776-5215675089972
Q gi|254780453|r 52 GLELARDLISDGKSVFLDMKL--FDIGSSVTAAIE-HIANMGVAMLTVH 97 (238)
Q Consensus 52 G~~~i~~l~k~~~~If~D~K~--~DIpnTv~~~v~-~~~~~g~d~iTvH 97 (238)
|..+++.|.+-|+.+ .++-+ =|+ +++...|. ++++-.++.+.+=
T Consensus 24 G~~Lv~~L~~AGH~l-a~R~iv~DD~-y~iRA~Vs~WIAd~~VqVil~T 70 (163)
T TIGR02667 24 GQVLVERLTEAGHRL-AERAIVKDDI-YQIRAQVSEWIADPAVQVILIT 70 (163)
T ss_pred HHHHHHHHHHHCHHH-HCCCCCHHHH-HHHHHHHHHHCCCCCCCEEEEC
T ss_conf 478999998715032-1143267448-9999999873489865568871
No 459
>TIGR01755 flav_wrbA flavoprotein WrbA; InterPro: IPR010089 This entry represents a protein, WrbA, related to and slightly larger than flavodoxin. In Escherichia coli, this protein is produced during stationary phase, binds to the trp repressor, and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti, and members are found in species in which homologs of the Escherichia coli trp operon repressor TrpR (P03032 from SWISSPROT) are not detected.; GO: 0010181 FMN binding, 0016481 negative regulation of transcription.
Probab=21.05 E-value=58 Score=13.68 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCCCCCCEECCHHH--HHHCCCCEEEECCHHCCCCCHHHHHHHHH
Q ss_conf 65798400369899--99659989999853308888899999999
Q gi|254780453|r 189 SATDGQKRFATPET--ALKYGASHIVVSRPIVRAADPVSAAQEFQ 231 (238)
Q Consensus 189 ~~~~dq~r~~tp~~--Ai~~GaD~iVVGR~I~~a~dP~~aa~~i~ 231 (238)
.+.|+..=|.||.+ -+-++.|-||+|-| |+=.|...--+.|.
T Consensus 56 ~K~dq~aPvaT~~eneevLA~yDAiI~Gt~-TRyG~masQMr~fL 99 (205)
T TIGR01755 56 KKLDQEAPVATPEENEEVLADYDAIIFGTP-TRYGNMASQMRNFL 99 (205)
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCEEEECCC-CCCCCCHHHHHHHH
T ss_conf 554433762683434021005763777288-73345046888874
No 460
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=20.85 E-value=61 Score=13.53 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=18.6
Q ss_pred EECCHHHHHHCC-CCEEEECCHH
Q ss_conf 036989999659-9899998533
Q gi|254780453|r 196 RFATPETALKYG-ASHIVVSRPI 217 (238)
Q Consensus 196 r~~tp~~Ai~~G-aD~iVVGR~I 217 (238)
.++||.||++.| +|-|+=-|++
T Consensus 171 ~~msa~EA~~yGliD~Il~~r~v 193 (196)
T PRK12551 171 FFMSPSEAVEYGLIDLVIDKRPV 193 (196)
T ss_pred CCCCHHHHHHCCCCCEEECCCCC
T ss_conf 60679999982998786078987
No 461
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.72 E-value=62 Score=13.51 Aligned_cols=188 Identities=16% Similarity=0.248 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHCCCC---CEEEEC--HHHHHCCCHHHHHHHHHHCHHHHH-HHHHCCH-HHHHHHHHHHHCCCCCEEEE
Q ss_conf 9899999999738852---289986--899842558999999851546678-7764042-46789877652156750899
Q gi|254780453|r 23 TVKEAERIVSILSDTV---SFYKIG--YHLSFSGGLELARDLISDGKSVFL-DMKLFDI-GSSVTAAIEHIANMGVAMLT 95 (238)
Q Consensus 23 ~~~e~l~l~~~l~~~i---~~iKig--~~l~~~~G~~~i~~l~k~~~~If~-D~K~~DI-pnTv~~~v~~~~~~g~d~iT 95 (238)
+.+++.++++.+.... .-+++. .++.+- ....+.+...+..+.. |.=.+|- +.|-+-....+.+.|++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~v~i~Pp~~~L--~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL~d~G~~~vi 89 (242)
T cd00311 12 TLAEALELAKALNAVLKDESGVEVVVAPPFTYL--AAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVI 89 (242)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH--HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 999999999999862567689769998998999--999998358984698401434568887474559999975999899
Q ss_pred E-EC-----CC---HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCC-CCHHHHHHHHHH---------HHHH---
Q ss_conf 7-24-----60---4677776530235531046664147776887652012-104887654454---------2110---
Q gi|254780453|r 96 V-HA-----YP---QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYE-KDISDMVRMRAV---------QARD--- 153 (238)
Q Consensus 96 v-H~-----~~---~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~-~~~~~~v~~~a~---------~a~~--- 153 (238)
+ |+ ++ +.+...++.+.+.+...+ +++=-+.. -.+.+.. ..+.+++..... +|-+
T Consensus 90 iGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI-~CiGE~~~---~~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvW 165 (242)
T cd00311 90 IGHSERRQYFGETDEDVAKKVKAALEAGLTPI-LCVGETLE---EREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVW 165 (242)
T ss_pred ECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEE-EEECCHHH---HHHCCCHHHHHHHHHHHHHHCCCHHCCEEEEECCHH
T ss_conf 75589898819987999999999998799279-99366066---554043999999999999847101036099977688
Q ss_pred -CCCCCCCCCCHHH----HHHHHHHCCCCEEEEECCCC-CCCCCCCCCEECCHHHHHHCC-CCEEEECCHHCCCC
Q ss_conf -2443111341034----45544202440355101135-786579840036989999659-98999985330888
Q gi|254780453|r 154 -IGMGGIVCSPQEV----RMVREIVGHNMVIVTPGIRM-LGSATDGQKRFATPETALKYG-ASHIVVSRPIVRAA 221 (238)
Q Consensus 154 -~g~~GvV~s~~ei----~~ir~~~~~~~~~itPGI~~-~~~~~~dq~r~~tp~~Ai~~G-aD~iVVGR~I~~a~ 221 (238)
.| .|..+|+.++ +.+|+.+...+-...+.|+. -|++.+. ...++.+..+ .|-+-|||+-..++
T Consensus 166 AIG-tG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~----~N~~~i~~~~~vdG~LvG~ASl~~~ 235 (242)
T cd00311 166 AIG-TGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP----ENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred HCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCH----HHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf 618-999999999999999999999986202036754896077898----8999995689999788535767888
No 462
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.57 E-value=50 Score=14.11 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCCCEEEEEE-----C-CCHHHHHHHHHHC
Q ss_conf 8987765215675089972-----4-6046777765302
Q gi|254780453|r 79 VTAAIEHIANMGVAMLTVH-----A-YPQTMRSAVSVVR 111 (238)
Q Consensus 79 v~~~v~~~~~~g~d~iTvH-----~-~~~~l~~~~~~~~ 111 (238)
+....+.+. .+|.+.|- + .+|.+|.......
T Consensus 57 v~~~~~~V~--~AD~lIVaTPVYkaSysGlLK~flDll~ 93 (191)
T PRK10569 57 VKTFTEQLQ--QADGLIVATPVYKASFSGALKTLLDLLP 93 (191)
T ss_pred HHHHHHHHH--HCCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf 999999998--5897999676013645289999998569
No 463
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=20.43 E-value=63 Score=13.47 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=11.4
Q ss_pred EEECC-CHHHHHHHHHHCC-CCCCEEEEE
Q ss_conf 97246-0467777653023-553104666
Q gi|254780453|r 95 TVHAY-PQTMRSAVSVVRD-TGICLLAVT 121 (238)
Q Consensus 95 TvH~~-~~~l~~~~~~~~~-~~~~il~Vt 121 (238)
.|++. |-|.++.++...+ .+..|.+..
T Consensus 4 ~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~ 32 (122)
T pfam01113 4 AVVGASGRMGRELIKAILEAPDFELVAAV 32 (122)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99889887899999999858996899999
No 464
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.21 E-value=63 Score=13.44 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=41.9
Q ss_pred CCEEEECHHHHH-----CCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 228998689984-----25589999998515466787764042467898776521567508997246
Q gi|254780453|r 38 VSFYKIGYHLSF-----SGGLELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAY 99 (238)
Q Consensus 38 i~~iKig~~l~~-----~~G~~~i~~l~k~~~~If~D~K~~DIpnTv~~~v~~~~~~g~d~iTvH~~ 99 (238)
..++=+|.++.. ....-+-++|.++|+++..=.=..|=+.....+++.+.+. +|.+.+.+.
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGG 69 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGG 69 (255)
T ss_pred EEEEEECCCEECCCEECCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCEEEECCC
T ss_conf 899997142214740342299999999964961899996399999999999999718-998998798
No 465
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=20.01 E-value=64 Score=13.42 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 67508997246046777765302355310466641477768876520121048876544542110244311134103445
Q gi|254780453|r 89 MGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRM 168 (238)
Q Consensus 89 ~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~GvV~s~~ei~~ 168 (238)
-+++++.+-+....+.......++.+-+.+.+-+-. ..++++. .--+-.|.+-|..|+||.|--.+.
T Consensus 74 en~~fiA~IAAR~vL~~i~~~kk~i~gk~~~ireYp------------a~slEea-IvAaVrAErdGakaiVCAPIvS~t 140 (170)
T COG4800 74 ENIGFIALIAARYVLEEIKFGKKGINGKSYLIREYP------------ASSLEEA-IVAAVRAERDGAKAIVCAPIVSST 140 (170)
T ss_pred CCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEEECC------------CCCHHHH-HHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 477846653448899888760103367336887436------------4528999-999998633366347764213378
Q ss_pred HHHHHCCCCEEEEEC
Q ss_conf 544202440355101
Q gi|254780453|r 169 VREIVGHNMVIVTPG 183 (238)
Q Consensus 169 ir~~~~~~~~~itPG 183 (238)
+-++++--...+-|+
T Consensus 141 ~EKivnvPV~tIiPk 155 (170)
T COG4800 141 AEKIVNVPVITIIPK 155 (170)
T ss_pred HHHHCCCCEEEEECC
T ss_conf 998707843897341
Done!