HHsearch alignment for GI: 254780453 and conserved domain: pfam03060
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=94.61 E-value=0.41 Score=27.57 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98776521567508997246046777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r 80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI 159 (238)
Q Consensus 80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv 159 (238)
T Consensus 104 ~~~~~~~~~~~~~~v~~~~G~-p~~~~v~~~~~~G~~v~~~--v~s-------------------~~~A~~a~~~G~D~i 161 (330)
T pfam03060 104 GDDDDSLKDAKPKVVSFGFGL-PPEDVIERLKESGTKVIPT--VSS-------------------AKEARKAEAAGADAV 161 (330)
T ss_pred HHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHCCCEEEEE--CCC-------------------HHHHHHHHHCCCCEE
T ss_conf 999999997499999989989-8279999999879989998--189-------------------999999998199989
Q ss_pred CCCCHH----------------HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf 134103----------------4455442024403551011357865798400369899996599899998533088
Q gi|254780453|r 160 VCSPQE----------------VRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA 220 (238)
Q Consensus 160 V~s~~e----------------i~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a 220 (238)
T Consensus 162 V~qG~eAGGH~G~~~~~~~~~L~~~v~~~~-~iPvIaAGGI~d-g~---------~iaaalalGA~gV~mGTrFlat 227 (330)
T pfam03060 162 VAQGPEAGGHRGTEVGTGTFLLVPTVVDAV-DIPVIAAGGIAD-GR---------GIAAALALGAEGVQIGTRFLAT 227 (330)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEECCCCC-HH---------HHHHHHHCCCCEEEECCEEEEC
T ss_conf 996676677788877730777789999871-697785266289-99---------9999996799899971300115