RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (238 letters)



>gnl|CDD|30632 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide
           transport and metabolism].
          Length = 240

 Score =  196 bits (500), Expect = 4e-51
 Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 12  KKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMK 71
            +RL+V LD+PT +EA   V  L  TV F K+G  L    G ++  +L + GK VFLD+K
Sbjct: 11  SRRLIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGKKVFLDLK 70

Query: 72  LFDIGSSVTAAIEHIANMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDF 129
           L DI ++V  A +  A++G   +TVHA+     +R+A   +   G  +LAVT LTSM + 
Sbjct: 71  LADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGEL 130

Query: 130 DLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGS 189
            L E G    + + V   A  A + G+ G+VCS +EV  +REI+G + +I+TPGI   GS
Sbjct: 131 QLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGA-GS 189

Query: 190 ATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAI 234
               Q R  TP  A++ GA +IVV RPI +A DPV+AA+   R I
Sbjct: 190 QGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREI 234


>gnl|CDD|73387 cd04725, OMP_decarboxylase_like, Orotidine 5'-phosphate
           decarboxylase (ODCase) is a dimeric enzyme that
           decarboxylates orotidine 5'-monophosphate (OMP) to form
           uridine 5'-phosphate (UMP), an essential step in the
           pyrimidine biosynthetic pathway. In mammals, UMP
           synthase contains two domains:  the orotate
           phosphoribosyltransferase (OPRTase) domain that
           catalyzes the transfer of phosphoribosyl
           5'-pyrophosphate (PRPP) to orotate to form OMP, and the
           orotidine-5'-phosphate decarboxylase (ODCase) domain
           that decarboxylates OMP to form UMP..
          Length = 216

 Score =  190 bits (485), Expect = 2e-49
 Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 4/218 (1%)

Query: 15  LVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKLFD 74
           L+V LD P  + A  ++  L   V   K+G  L  + G E+ ++L   G  VFLD+KL D
Sbjct: 1   LIVALDPPDEEFALALIDALGPYVCAVKVGLELFEAAGPEIVKELRELGFLVFLDLKLGD 60

Query: 75  IGSSVTAAIEHIANMGVAMLTVHAYP--QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLR 132
           I ++V AA E +  +G   +TVH Y     +++A+    + G  L AVTVL+S    DL+
Sbjct: 61  IPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQ 120

Query: 133 ESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATD 192
           E G    + D+V   A  AR+ G+ G+VC   E   +R  +G + +I+TPGI   GS  D
Sbjct: 121 E-GIPGSLEDLVERLAKLAREAGVDGVVCGATEPEALRRALGPDFLILTPGIGAQGSGDD 179

Query: 193 GQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230
            QKR  TPE A++ GA +IVV RPI +AADPV+AA+  
Sbjct: 180 -QKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEAI 216


>gnl|CDD|143972 pfam00215, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS
           family.  This family includes Orotidine 5'-phosphate
           decarboxylase enzymes EC:4.1.1.23 that are involved in
           the final step of pyrimidine biosynthesis. The family
           also includes enzymes such as hexulose-6-phosphate
           synthase. This family appears to be distantly related to
           pfam00834.
          Length = 218

 Score =  169 bits (429), Expect = 8e-43
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 13  KRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDGKSVFLDMKL 72
             L V LD+PT++EA  +   L   V   K+G  L  + GL+L  +L   G  +FLD+K 
Sbjct: 1   PNLCVALDVPTLEEALELADELGPYVDIIKVGTPLFEAFGLKLVAELRKHGFLIFLDLKF 60

Query: 73  FDIGSSVTAAIEHIANMGVAMLTVHAYP--QTMRSAVSVVRDTGI-CLLAVTVLTSMDDF 129
            DIG++V    ++ A +G  ++TVHAY    T+++A     + G   LL V  L+S    
Sbjct: 61  ADIGNTVAKQAKYKAKLGADIVTVHAYAGDGTLKAAKEAAEEYGGRGLLLVAELSSKGSL 120

Query: 130 DLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGS 189
           DL+E G      ++V   A  A   G+ G+V S  E   +REI   + +I+TPGI + G 
Sbjct: 121 DLQEEGDLGYTQEIVHRAADLA--AGVDGVVASATEPEALREIRP-DFLILTPGIGLQGG 177

Query: 190 ATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230
              GQ+R  TP  A + GA  I+V R I  A DPV+AA+  
Sbjct: 178 DAGGQQRVTTPAVAKEAGADIIIVGRGITGAGDPVAAARAI 218


>gnl|CDD|73388 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
           (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
           (HPS). KGPDC catalyzes the formation of L-xylulose
           5-phosphate and carbon dioxide from 3-keto-L-gulonate
           6-phosphate as part of the anaerobic pathway for
           L-ascorbate utilization in some eubacteria. HPS
           catalyzes the formation of
           D-arabino-3-hexulose-6-phosphate from D-ribulose
           5-phosphate and formaldehyde in microorganisms that can
           use formaldehyde as a carbon source. Both catalyze
           reactions that involve the Mg2+-assisted formation and
           stabilization of 1,2-enediolate reaction intermediates..
          Length = 202

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 22/219 (10%)

Query: 15  LVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDL--ISDGKSVFLDMKL 72
           L V LDL  ++EA  +   + D V   + G  L  S G+E  R L      K +  D+K 
Sbjct: 3   LQVALDLLDLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKT 62

Query: 73  FDIGS-SVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDL 131
            D G+     A +  A++   +        T++ AV   +  G        L  ++D + 
Sbjct: 63  ADAGALEAEMAFKAGADIVTVLGAAPL--STIKKAVKAAKKYGK--EVQVDLIGVEDPEK 118

Query: 132 RESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSAT 191
           R +   K   D+V +      D    G      +++ V++++G   V V  GI       
Sbjct: 119 R-AKLLKLGVDIVILHR--GIDAQAAGGWWPEDDLKKVKKLLG-VKVAVAGGITP----- 169

Query: 192 DGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEF 230
                  T     K GA  ++V R I  AADP  AA+EF
Sbjct: 170 ------DTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202


>gnl|CDD|30618 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
           [Carbohydrate transport and metabolism].
          Length = 217

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 27/227 (11%)

Query: 15  LVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLIS--DGKSVFLDMKL 72
           L V LDL  ++EA  I   ++D V   ++G  L  + G+   R L      K +  D+K 
Sbjct: 6   LQVALDLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKT 65

Query: 73  FDIGS-SVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDL 131
            D G+     A E  A+    +        T++ A+ V ++ G        L  + D + 
Sbjct: 66  ADAGAIEARMAFEAGADWVTVLGAAD--DATIKKAIKVAKEYGK--EVQIDLIGVWDPEQ 121

Query: 132 RESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVI-VTPGIRMLGSA 190
           R    ++   D V +   + RD    G      ++  ++++      + V  GI      
Sbjct: 122 RAKWLKELGVDQVILH--RGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI------ 173

Query: 191 TDGQKRFATPETALKY---GASHIVVSRPIVRAADPVSAAQEFQRAI 234
                   TPE    +   GA  ++V R I  A DP  AA++F+  I
Sbjct: 174 --------TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212


>gnl|CDD|32205 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
           [Nucleotide transport and metabolism].
          Length = 262

 Score = 31.7 bits (72), Expect = 0.17
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 154 IGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213
           IG G  + +P  + ++ E      VIV  GI   G+ +D          A++ GA  +++
Sbjct: 162 IGSGLGLQNPYNLEIIIEEADVP-VIVDAGI---GTPSDAA-------QAMELGADAVLL 210

Query: 214 SRPIVRAADPVSAAQEFQRAI 234
           +  I RA DPV+ A+ F  A+
Sbjct: 211 NTAIARAKDPVAMARAFALAV 231


>gnl|CDD|107215 cd06459, M3B_Oligoendopeptidase_F, Peptidase family M3B
           Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is
           mostly bacterial and includes oligoendopeptidase F from
           Lactococcus lactis. This enzyme hydrolyzes peptides
           containing between 7 and 17 amino acids with fairly
           broad specificity. The PepF gene is duplicated in L.
           lactis on the plasmid that bears it, while a shortened
           second copy is found in Bacillus subtilis. Most
           bacterial PepFs are cytoplasmic endopeptidases; however,
           the PepF Bacillus amyloliquefaciens oligopeptidase is a
           secreted protein and may facilitate the process of
           sporulation. Specifically, the yjbG gene encoding the
           homolog of the PepF1 and PepF2 oligoendopeptidases of
           Lactococcus lactis has been identified in Bacillus
           subtilis as an inhibitor of sporulation initiation when
           over expressed from a multicopy plasmid.
          Length = 427

 Score = 29.1 bits (66), Expect = 1.00
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 38  VSFYKIGYHLSFSGGLELARDLISDGKSVFLD--MKLFDIGSSVTAAIEHIANMGVAMLT 95
           V FY   Y       L L      DG+   ++  ++L   G S +  +E +   GV + +
Sbjct: 358 VPFYVYPYAFGQLAALALYAKYKEDGEG-AVEKYLELLKAGGSKS-PLELLKKAGVDLTS 415

Query: 96  VHAYPQTMRSAVSVVR 111
               P     A+ V+ 
Sbjct: 416 ----PDFWEEAIDVIE 427


>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG.  This family
           consists of several bacterial thiazole biosynthesis
           protein G sequences. ThiG, together with ThiF and ThiH,
           is proposed to be involved in the synthesis of
           4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
           intermediate in the thiazole production pathway.
          Length = 246

 Score = 29.1 bits (66), Expect = 1.0
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 10/57 (17%)

Query: 178 VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAI 234
           VIV  GI   G+ +D     A    A++ GA  ++++  I RA DPV+ A+ F+ A+
Sbjct: 177 VIVDAGI---GTPSD-----AA--QAMELGADAVLLNTAIARAKDPVAMARAFKLAV 223


>gnl|CDD|73390 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
           that is involved in the formation of the thiazole moiety
           of thiamin pyrophosphate, an essential ubiquitous
           cofactor that plays an important role in carbohydrate
           and amino acid metabolism. ThiG catalyzes the formation
           of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
           and dehydroglycine, with the help of the sulfur carrier
           protein ThiS that carries the sulfur needed for thiazole
           assembly on its carboxy terminus (ThiS-COSH)..
          Length = 248

 Score = 28.9 bits (65), Expect = 1.2
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 154 IGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVV 213
           IG G  + +P  +R++ E      VIV  GI   G+ +D  +       A++ GA  +++
Sbjct: 155 IGSGQGLLNPYNLRIIIERA-DVPVIVDAGI---GTPSDAAQ-------AMELGADAVLL 203

Query: 214 SRPIVRAADPVSAAQEFQRAI 234
           +  I +A DPV+ A+ F+ A+
Sbjct: 204 NTAIAKAKDPVAMARAFKLAV 224


>gnl|CDD|30701 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
           metabolism].
          Length = 211

 Score = 28.3 bits (63), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 201 ETALKYGASHIVVSRPIVRAADPVSAAQEFQRAI 234
              L+ GA  + V   I  AADP +AA+  + A+
Sbjct: 173 PEVLEAGADGVAVVSAITSAADPAAAAKALRNAL 206


>gnl|CDD|30053 cd01310, TatD_DNAse, TatD like proteins;  E.coli TatD is a
           cytoplasmic protein, shown to have magnesium dependent
           DNase activity..
          Length = 251

 Score = 28.2 bits (63), Expect = 2.2
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 14  RLVVGLDLP----TVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLISDG 63
            L   L+LP    +    E ++ IL +     +  +H  FSG  E A++L+  G
Sbjct: 115 ELAKELNLPVVIHSRDAHEDVLEILKEYGPPKRGVFH-CFSGSAEEAKELLDLG 167


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 28.0 bits (62), Expect = 2.4
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 48  SFSGG----LELARDLISDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTM 103
           +FSGG    L++AR+L++  + VF+D     +  SV A +  +    V  L +       
Sbjct: 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL------- 203

Query: 104 RSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISD 142
            + V V  D  +  L    L  M    + ESG    + D
Sbjct: 204 -AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241


>gnl|CDD|73371 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
           FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
           family occurs in both prokaryotes and eukaryotes.
           Members of this family include flavocytochrome b2
           (FCB2), glycolate oxidase (GOX), lactate monooxygenase
           (LMO), mandelate dehydrogenase (MDH), and long chain
           hydroxyacid oxidase (LCHAO). In green plants, glycolate
           oxidase is one of the key enzymes in photorespiration
           where it oxidizes glycolate to glyoxylate. LMO catalyzes
           the oxidation of L-lactate to acetate and carbon
           dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
           It is an enzyme in the mandelate pathway that occurs in
           several strains of Pseudomonas which converts
           (R)-mandelate to benzoate..
          Length = 299

 Score = 27.3 bits (61), Expect = 3.8
 Identities = 38/177 (21%), Positives = 57/177 (32%), Gaps = 52/177 (29%)

Query: 80  TAAIEHIANMGVAMLTVHAY----PQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESG 135
           T ++E +A           Y     +     +      G   L +TV       D    G
Sbjct: 104 TTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV-------DTPVLG 156

Query: 136 YEKDISDMVRMR-----------------AVQARDIGMGGIVCS----------PQEVRM 168
                 D+  +R                 A++A D G  GIV S          P  +  
Sbjct: 157 RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDA 216

Query: 169 VREI---VGHNM-VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAA 221
           + EI   VG  + V++  GIR     TD  K       AL  GA  +++ RP +   
Sbjct: 217 LPEIVAAVGGRIEVLLDGGIR---RGTDVLK-------ALALGADAVLIGRPFLYGL 263


>gnl|CDD|144356 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family 15. 
          Length = 416

 Score = 27.0 bits (60), Expect = 4.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 110 VRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVR 145
           VRD+ + +LA+  L   D+ D      E  ++ ++R
Sbjct: 42  VRDSALTILALLGLGYRDEADAFRYELETSLAKLMR 77


>gnl|CDD|73374 cd02812, PcrB_like, PcrB_like proteins. One member of this family,
           a protein from Archaeoglobus fulgidus, has been
           characterized as a (S)-3-O-geranylgeranylglyceryl
           phosphate synthase (AfGGGPS). AfGGGPS catalyzes the
           formation of an ether linkage between
           sn-glycerol-1-phosphate (G1P) and geranylgeranyl
           diphosphate (GGPP), the committed step in archaeal lipid
           biosynthesis. Therefore, it has been proposed that
           PcrB-like proteins are either prenyltransferases or are
           involved in lipoteichoic acid biosynthesis although the
           exact function is still unknown..
          Length = 219

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 16/59 (27%)

Query: 158 GIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASH---IVV 213
           G    P+ VR V++++G   +IV  GIR             + E A +   +    IVV
Sbjct: 158 GAYGPPEVVRAVKKVLGDTPLIVGGGIR-------------SGEQAKEMAEAGADTIVV 203


>gnl|CDD|146784 pfam04326, AAA_4, Divergent AAA domain.  This family is related
          to the pfam00004 family, and presumably has the same
          function (ATP-binding).
          Length = 116

 Score = 26.9 bits (60), Expect = 5.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 5  LIIDVDEKKRLVVGLDLPTVKEAERIVSILSDTVS 39
          L+I VD+K   VVG+D       + + + + D + 
Sbjct: 33 LLIGVDDKGGEVVGIDDDQDDLLDLLRNAILDLIE 67


>gnl|CDD|37491 KOG2280, KOG2280, KOG2280, Vacuolar assembly/sorting protein VPS16
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 829

 Score = 26.9 bits (59), Expect = 5.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 28  ERIVSILSDTVSFYKIGYHLSFSGGLELARDLI----SDGKSVFLDMKLFDIGSSVTAAI 83
           E++ + L+  +S+  I       G  ELAR L+      G+ V L +K+ D   ++  AI
Sbjct: 498 EKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557

Query: 84  EHIANMGVAMLTVHAYPQTMRS 105
           E      +  + +H   +  RS
Sbjct: 558 ESGDTDLIIQVLLHLKNKLNRS 579


>gnl|CDD|35758 KOG0538, KOG0538, KOG0538, Glycolate oxidase [Energy production and
           conversion].
          Length = 363

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 24/85 (28%)

Query: 148 AVQARDIGMGGIV----------CSPQEVRMVREIV----GHNMVIVTPGIRMLGSATDG 193
           A +A + G+ GI+            P  +  + E+V    G   V +  G+R     TD 
Sbjct: 237 ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVR---RGTDV 293

Query: 194 QKRFATPETALKYGASHIVVSRPIV 218
            K       AL  GA  + + RPIV
Sbjct: 294 LK-------ALALGAKGVFIGRPIV 311


>gnl|CDD|73367 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
           synthase)/TenI. TMP synthase catalyzes an important step
           in the thiamine biosynthesis pathway, the substitution
           of the pyrophosphate of 2-methyl-4-amino-5-
           hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
           (beta-hydroxyethyl) thiazole phosphate to yield thiamine
           phosphate. TenI is a enzymatically inactive regulatory
           protein involved in the regulation of several
           extracellular enzymes. This superfamily also contains
           other enzymatically inactive proteins with unknown
           functions..
          Length = 196

 Score = 26.7 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 199 TPETA---LKYGASHIVVSRPIVRAADPVSAAQEFQR 232
           TPE A   L  GA  + V   I  A DP +AA+E   
Sbjct: 160 TPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196


>gnl|CDD|38321 KOG3111, KOG3111, KOG3111, D-ribulose-5-phosphate 3-epimerase
           [Carbohydrate transport and metabolism].
          Length = 224

 Score = 26.4 bits (58), Expect = 6.3
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 26/169 (15%)

Query: 63  GKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICL-LAV 120
           G   F D+ +  +  +    ++ +A  G ++ T H    Q     V  +R+ G+ + LA+
Sbjct: 62  GADPFFDVHM--MVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLAL 119

Query: 121 TVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQ---EVRMVREIVGHNM 177
              T ++D +          ++ V M  V   + G GG         +V  +RE   +  
Sbjct: 120 KPGTPVEDLEPL--------AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD 171

Query: 178 VIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSA 226
           + V  G+             +T + A + GA+ IV    +  AADP   
Sbjct: 172 IEVDGGVGP-----------STIDKAAEAGANMIVAGSAVFGAADPSDV 209


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,719,854
Number of extensions: 140740
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 29
Length of query: 238
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,297,318
Effective search space: 631705746
Effective search space used: 631705746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)