BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (238 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 238

 Score =  478 bits (1230), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLI 60
           MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLI
Sbjct: 1   MDAGLIIDVDEKKRLVVGLDLPTVKEAERIVSILSDTVSFYKIGYHLSFSGGLELARDLI 60

Query: 61  SDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAV 120
           SDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAV
Sbjct: 61  SDGKSVFLDMKLFDIGSSVTAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAV 120

Query: 121 TVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIV 180
           TVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIV
Sbjct: 121 TVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGIVCSPQEVRMVREIVGHNMVIV 180

Query: 181 TPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLIS 238
           TPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLIS
Sbjct: 181 TPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADPVSAAQEFQRAISLIS 238


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 23.9 bits (50), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 54  ELARDLISDGKSVFLDMKL---FDIGSSVTAAIEHIANMGVAMLT 95
           EL + L   GK V++ +     ++      AAI  +AN G+ +L+
Sbjct: 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLS 239


>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 542

 Score = 23.5 bits (49), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 154 IGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFAT 199
           IG GGI+ +P    ++R+      +I+T      G+  D   ++ T
Sbjct: 83  IGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNT 128


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 184 IRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADP 223
           +R + + + GQ+  A  ++   +GA  I++S P V  ADP
Sbjct: 209 MRYIANRSSGQQGHAIAKSLAYFGAEVILISGP-VSIADP 247


>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 374

 Score = 23.1 bits (48), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 115 ICLLAVTVLTSMDDFDLRESGYEKDISDMVR 145
           +C +  T   S  + +LR++G+  DI D+VR
Sbjct: 83  LCRIKNTWNMSFRN-ELRDNGFVNDIDDIVR 112


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.136    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,864
Number of Sequences: 1233
Number of extensions: 5140
Number of successful extensions: 10
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 328,796
effective HSP length: 71
effective length of query: 167
effective length of database: 241,253
effective search space: 40289251
effective search space used: 40289251
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)