HHsearch alignment for GI: 254780454 and conserved domain: COG0592
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair].
Probab=99.32 E-value=8.7e-10 Score=78.39 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=158.8
Q ss_pred EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf 45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 (385)
Q Consensus 129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el 208 (385)
T Consensus 2 k~~i~r~~l~~~l~~~~~~v~~r~~~pil~~vli~~~~~--~l~~~~td~ei~~~~~i~~~--v~~~g~~~v~~k~l~di 77 (364)
T COG0592 2 KFSIERENLLKALQLVSRIVESRPTIPILSNVLIEAKEN--GLTLTGTDLEISLEARIPAE--VEAEGEVAVPAKKLLDI 77 (364)
T ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEECC--EEEEEEECCCEEEEEEEEEE--EEEEEHHHHHHHHHHHH
T ss_conf 899988999999999986616899974560579999788--27999955525899998789--99976014448999999
Q ss_pred HHHCCCCCCCCCCCCCCCC-EEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-----C
Q ss_conf 2102776464331334553-0100250699985126-6553221013555661799848998888988741012-----3
Q gi|254780454|r 209 LRILSSKDSSVKVSLSESR-IHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----V 281 (385)
Q Consensus 209 ~k~l~~~~~~v~i~~~~~~-i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-----~ 281 (385)
T Consensus 78 i~~L~de-~~~~~~~~~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~~---~~~~l~~~~Lk~ii~~~~fa~~~~e~~~ 153 (364)
T COG0592 78 ISKLPDE-AVFLVTEDGISLLAVDSGKSAFVLLTLPAEDFPEYPVDEEE---VEFGLPTELLKKIIKRTKFADSLLETRY 153 (364)
T ss_pred HHHCCCC-CEEEEECCCCEEEEECCCCEEEEECCCCHHHCCCCCCCCCC---EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9858852-05999627830799826835999658897998775688775---1788529999999998776565553353
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCC----CCCCEEEEEECC
Q ss_conf 55530256517659999807873268999998962884399963889988987357533----466338999658
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE----VVDDEVVFRLDS 352 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~----~~~e~i~l~~~~ 352 (385)
T Consensus 154 ~lngv~~~i~~~~l~~vatd~-~rla~~~~~~~~~~~~~~viIp~k~l~el~k~~~d~~~~~~~~sd~i~f~~~~ 227 (364)
T COG0592 154 ELNGVLLEIEGTKLRLVATDG-HRLAVEELEIPELEEDASVIIPAKTLKELIKLLKDADVEIFLVSDQIRFKAGE 227 (364)
T ss_pred HCCEEEEEEECCEEEEEECCC-CEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCEEEEEECC
T ss_conf 264699999688899998388-45788724677667883899987999999864215663178617879999888