HHsearch alignment for GI: 254780454 and conserved domain: COG0592

>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair].
Probab=99.32  E-value=8.7e-10  Score=78.39  Aligned_cols=215  Identities=16%  Similarity=0.220  Sum_probs=158.8

Q ss_pred             EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf             45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r  129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI  208 (385)
Q Consensus       129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el  208 (385)
T Consensus         2 k~~i~r~~l~~~l~~~~~~v~~r~~~pil~~vli~~~~~--~l~~~~td~ei~~~~~i~~~--v~~~g~~~v~~k~l~di   77 (364)
T COG0592           2 KFSIERENLLKALQLVSRIVESRPTIPILSNVLIEAKEN--GLTLTGTDLEISLEARIPAE--VEAEGEVAVPAKKLLDI   77 (364)
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEECC--EEEEEEECCCEEEEEEEEEE--EEEEEHHHHHHHHHHHH
T ss_conf             899988999999999986616899974560579999788--27999955525899998789--99976014448999999


Q ss_pred             HHHCCCCCCCCCCCCCCCC-EEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-----C
Q ss_conf             2102776464331334553-0100250699985126-6553221013555661799848998888988741012-----3
Q gi|254780454|r  209 LRILSSKDSSVKVSLSESR-IHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----V  281 (385)
Q Consensus       209 ~k~l~~~~~~v~i~~~~~~-i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-----~  281 (385)
T Consensus        78 i~~L~de-~~~~~~~~~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~~---~~~~l~~~~Lk~ii~~~~fa~~~~e~~~  153 (364)
T COG0592          78 ISKLPDE-AVFLVTEDGISLLAVDSGKSAFVLLTLPAEDFPEYPVDEEE---VEFGLPTELLKKIIKRTKFADSLLETRY  153 (364)
T ss_pred             HHHCCCC-CEEEEECCCCEEEEECCCCEEEEECCCCHHHCCCCCCCCCC---EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9858852-05999627830799826835999658897998775688775---1788529999999998776565553353


Q ss_pred             CCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCC----CCCCEEEEEECC
Q ss_conf             55530256517659999807873268999998962884399963889988987357533----466338999658
Q gi|254780454|r  282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE----VVDDEVVFRLDS  352 (385)
Q Consensus       282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~----~~~e~i~l~~~~  352 (385)
T Consensus       154 ~lngv~~~i~~~~l~~vatd~-~rla~~~~~~~~~~~~~~viIp~k~l~el~k~~~d~~~~~~~~sd~i~f~~~~  227 (364)
T COG0592         154 ELNGVLLEIEGTKLRLVATDG-HRLAVEELEIPELEEDASVIIPAKTLKELIKLLKDADVEIFLVSDQIRFKAGE  227 (364)
T ss_pred             HCCEEEEEEECCEEEEEECCC-CEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCEEEEEECC
T ss_conf             264699999688899998388-45788724677667883899987999999864215663178617879999888