HHsearch alignment for GI: 254780454 and conserved domain: PRK01115
>PRK01115 DNA polymerase sliding clamp; Validated.
Probab=99.27 E-value=4.6e-09 Score=73.99 Aligned_cols=225 Identities=19% Similarity=0.299 Sum_probs=158.5
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCC-----HHCCCCCH
Q ss_conf 5056113554202202300245565210116677617873489998534157666643578753310-----00001000
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP-----SIIVPRKA 204 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~-----~~iiP~k~ 204 (385)
T Consensus 4 ~~i~a~~~k~i~e~---------l~~l~~e~~~~~~~~Gl--~iqamD~shv~lv~l~l~~~~F~~Y~~d~~~iGv~~~~ 72 (245)
T PRK01115 4 AVISAEELKDAIDA---------LSVLVDEAKFKVTEEGI--SVRAVDPANVAMVDLELPKSAFSEYEADGGEIGVDLDR 72 (245)
T ss_pred EEECHHHHHHHHHH---------HHHHHCEEEEEECCCEE--EEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEHHH
T ss_conf 99819999999999---------98875469999927826--99999877289999996864190798159799999899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCC--CEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 1222210277646433133455--30100250699985126655322101355-56617998489988889887410123
Q gi|254780454|r 205 VGEILRILSSKDSSVKVSLSES--RIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 205 l~el~k~l~~~~~~v~i~~~~~--~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
T Consensus 73 l~KIlk~~~~-~d~l~l~~~~~~~~l~i~~~~~~f~l~Lidi~~~~~~~~iP~~e~~~~i~m~S~~f~~i~~dl~~~~D~ 151 (245)
T PRK01115 73 LKDILGMADS-GDTVRLELDEENRKLEISFGGLEYTLSLIDPSTIRKEPDIPELDLPAKVVLLGADLKRAVKAAEKVSDH 151 (245)
T ss_pred HHHHHHHCCC-CCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCE
T ss_conf 8999962789-987999992899889999846289997106333234689999774599999989999999999861987
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 5553025651765999980787326899999----896288439996388998898735753346633899965898758
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~ 357 (385)
T Consensus 152 ----i~i~~~~~~~~~~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~ysl~Yl~~~~k~~~l----s~~v~i~~~-~d~Pl 221 (245)
T PRK01115 152 ----IALGVDDEEFYMEAEG-DTDEVKLELEDDELIDLSPGEAKSLFSLDYLKDMVKAIGK----ADEVTISLG-NDFPV 221 (245)
T ss_pred ----EEEEEECCEEEEEEEC-CCEEEEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHCCC----CCEEEEEEC-CCCCE
T ss_conf ----9999948999999984-7736999966986168403662358879999998735157----986999975-99889
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9943776544455566763799832
Q gi|254780454|r 358 FIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 358 ~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
T Consensus 222 ~l~y~~~------~~~g~l~f~LAP 240 (245)
T PRK01115 222 KIEFYIA------DGNGRVTYLLAP 240 (245)
T ss_pred EEEEEEC------CCCEEEEEEECC
T ss_conf 9999977------983999999888