HHsearch alignment for GI: 254780454 and conserved domain: PRK01115
>PRK01115 DNA polymerase sliding clamp; Validated.
Probab=98.70 E-value=4.6e-06 Score=55.77 Aligned_cols=201 Identities=14% Similarity=0.234 Sum_probs=130.2
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEE--EEEEE------EEECCCCEEEEEHHH
Q ss_conf 5898599999999987502037888610133899998997999996782899--99997------775268079994998
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIP------ASVDVCGSITVSAHL 73 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i--~~~i~------~~i~~~G~~~v~a~~ 73 (385)
T Consensus 3 ~~~i~a~~~k~i~e~l~~l~~---------e~~~~~~~~Gl~iqamD~shv~lv~l~l~~~~F~~Y~~d~~-~iGv~~~~ 72 (245)
T PRK01115 3 KAVISAEELKDAIDALSVLVD---------EAKFKVTEEGISVRAVDPANVAMVDLELPKSAFSEYEADGG-EIGVDLDR 72 (245)
T ss_pred EEEECHHHHHHHHHHHHHHHC---------EEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCC-EEEEEHHH
T ss_conf 999819999999999988754---------69999927826999998772899999968641907981597-99999899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCC
Q ss_conf 7788740777773047773367508999867820243036621---1432123324304505611355420220230024
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~ 150 (385)
T Consensus 73 l~KIlk~~~~~d~l~l~~~~~-~~~l~i~~~~~~f~l~Lidi~~~~~~~~iP~~e~~~~i~m~S~~f~~i~~dl~~~-~- 149 (245)
T PRK01115 73 LKDILGMADSGDTVRLELDEE-NRKLEISFGGLEYTLSLIDPSTIRKEPDIPELDLPAKVVLLGADLKRAVKAAEKV-S- 149 (245)
T ss_pred HHHHHHHCCCCCEEEEEEECC-CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHC-C-
T ss_conf 899996278998799999289-9889999846289997106333234689999774599999989999999999861-9-
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC-----CCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5565210116677617873489998534157666643578753-----31000001000122221027764643313345
Q gi|254780454|r 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA-----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 (385)
Q Consensus 151 d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~-----~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~ 225 (385)
T Consensus 150 D~-------i~i~~~~~~~~~~~~gd~~-~---~~~~~~~~~~~~~~~~~~~~~ysl~Yl~~~~k~~~l-s~~v~i~~~~ 217 (245)
T PRK01115 150 DH-------IALGVDDEEFYMEAEGDTD-E---VKLELEDDELIDLSPGEAKSLFSLDYLKDMVKAIGK-ADEVTISLGN 217 (245)
T ss_pred CE-------EEEEEECCEEEEEEECCCE-E---EEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 87-------9999948999999984773-6---999966986168403662358879999998735157-9869999759
Q ss_pred CC
Q ss_conf 53
Q gi|254780454|r 226 SR 227 (385)
Q Consensus 226 ~~ 227 (385)
T Consensus 218 d~ 219 (245)
T PRK01115 218 DF 219 (245)
T ss_pred CC
T ss_conf 98