HHsearch alignment for GI: 254780454 and conserved domain: PRK05643

>PRK05643 DNA polymerase III subunit beta; Validated.
Probab=100.00  E-value=0  Score=640.55  Aligned_cols=364  Identities=40%  Similarity=0.679  Sum_probs=343.8

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE-EECCCCEEEEEHHHHHHHHH
Q ss_conf             95898599999999987502037888610133899998997999996782899999977-75268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~-~i~~~G~~~v~a~~l~~iik   79 (385)
T Consensus         1 Mk~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ill~~~~~~l~l~atd~e~~i~~~i~~~~i~~~G~~~v~ak~l~~ivk   80 (365)
T PRK05643          1 MKFTIERNALLKALQLVQRAVERRNTIPILSNILIEADEGGLSLTGTDLEIGIETKIPAAEVEEEGAITVPAKKFLDIVR   80 (365)
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCEEEEEEHHHHHHHHH
T ss_conf             98999899999999998755288986288768799998999999998885599999974144455499997799898996


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf             07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG  159 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G  159 (385)
T Consensus        81 ~lp~~~-i~l~~~---~~~l~I~~~~~~f~l~~~~~~dfP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~de~r~~L~G  156 (365)
T PRK05643         81 KLPDSE-ITLELE---GNRLTIKSGRSRFNLQTLPAEDFPELPEIEEEVSFSLPQKTLKRLIKKTQFAISTQETRYYLNG  156 (365)
T ss_pred             HCCCCC-EEEEEC---CCEEEEEECCEEEEEECCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHEECCCCCCCCEEEE
T ss_conf             389984-599974---9989999787799997689799889866788717999799999999745400045567201325


Q ss_pred             EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf             66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r  160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV  239 (385)
Q Consensus       160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s  239 (385)
T Consensus       157 v~~~~~~~--~l~~vATDg~RLa~~~~~~~~~-~~~~~~iiP~K~l~el~kll~~~~~~v~i~~~~~~i~f~~~~~~~~s  233 (365)
T PRK05643        157 VLLEIKGN--ELRAVATDGHRLAVRSLELEGT-EEMFSVIIPRKTLLELQKLLDDSDEPVEIFLDENQIRFTVGNVTFTS  233 (365)
T ss_pred             EEEEEECC--EEEEEEECCCEEEEEECCCCCC-CCCCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEEE
T ss_conf             99999699--9999996433124676135677-76504898879999999871789873899984887999989999999


Q ss_pred             EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf             51266553221013555661799848998888988741012355530256517659999807873268999998962884
Q gi|254780454|r  240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP  319 (385)
Q Consensus       240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~  319 (385)
T Consensus       234 rLi~g~yPdy~~viP~~~~~~~~i~r~~l~~al~Rv~i~~~~~~~~v~l~~~~~~l~is~~~~e~g~~~e~i~~~~~Ge~  313 (365)
T PRK05643        234 KLLDGKFPDYSRVIPKEFDKELTVDREELIQALERAALLSNEKNRGVKLSLSPGQLKISANSPEQGEAKEELEVEYSGEE  313 (365)
T ss_pred             EECCCCCCCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf             84377999735518988983799628999999998835513788539999979989999848876069999998970886


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
T Consensus       314 ~~i~fN~~yL~d~L~~~~~-----e~V~l~~~~~~~p~~i~~~~~---------~~~~~liMP~ri  365 (365)
T PRK05643        314 LEIGFNVKYLLDVLKALKS-----EEVRLSFNDSNSPFLITPPED---------DSFLYVVMPVRL  365 (365)
T ss_pred             EEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             7999979999999853899-----879999858999789986899---------964899961329