HHsearch alignment for GI: 254780454 and conserved domain: PRK05643
>PRK05643 DNA polymerase III subunit beta; Validated.
Probab=100.00 E-value=0 Score=640.55 Aligned_cols=364 Identities=40% Similarity=0.679 Sum_probs=343.8
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE-EECCCCEEEEEHHHHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999977-75268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~-~i~~~G~~~v~a~~l~~iik 79 (385)
T Consensus 1 Mk~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ill~~~~~~l~l~atd~e~~i~~~i~~~~i~~~G~~~v~ak~l~~ivk 80 (365)
T PRK05643 1 MKFTIERNALLKALQLVQRAVERRNTIPILSNILIEADEGGLSLTGTDLEIGIETKIPAAEVEEEGAITVPAKKFLDIVR 80 (365)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCEEEEEEHHHHHHHHH
T ss_conf 98999899999999998755288986288768799998999999998885599999974144455499997799898996
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
T Consensus 81 ~lp~~~-i~l~~~---~~~l~I~~~~~~f~l~~~~~~dfP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~de~r~~L~G 156 (365)
T PRK05643 81 KLPDSE-ITLELE---GNRLTIKSGRSRFNLQTLPAEDFPELPEIEEEVSFSLPQKTLKRLIKKTQFAISTQETRYYLNG 156 (365)
T ss_pred HCCCCC-EEEEEC---CCEEEEEECCEEEEEECCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHEECCCCCCCCEEEE
T ss_conf 389984-599974---9989999787799997689799889866788717999799999999745400045567201325
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385)
T Consensus 157 v~~~~~~~--~l~~vATDg~RLa~~~~~~~~~-~~~~~~iiP~K~l~el~kll~~~~~~v~i~~~~~~i~f~~~~~~~~s 233 (365)
T PRK05643 157 VLLEIKGN--ELRAVATDGHRLAVRSLELEGT-EEMFSVIIPRKTLLELQKLLDDSDEPVEIFLDENQIRFTVGNVTFTS 233 (365)
T ss_pred EEEEEECC--EEEEEEECCCEEEEEECCCCCC-CCCCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEEE
T ss_conf 99999699--9999996433124676135677-76504898879999999871789873899984887999989999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 51266553221013555661799848998888988741012355530256517659999807873268999998962884
Q gi|254780454|r 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 (385)
Q Consensus 240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~ 319 (385)
T Consensus 234 rLi~g~yPdy~~viP~~~~~~~~i~r~~l~~al~Rv~i~~~~~~~~v~l~~~~~~l~is~~~~e~g~~~e~i~~~~~Ge~ 313 (365)
T PRK05643 234 KLLDGKFPDYSRVIPKEFDKELTVDREELIQALERAALLSNEKNRGVKLSLSPGQLKISANSPEQGEAKEELEVEYSGEE 313 (365)
T ss_pred EECCCCCCCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf 84377999735518988983799628999999998835513788539999979989999848876069999998970886
Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
T Consensus 314 ~~i~fN~~yL~d~L~~~~~-----e~V~l~~~~~~~p~~i~~~~~---------~~~~~liMP~ri 365 (365)
T PRK05643 314 LEIGFNVKYLLDVLKALKS-----EEVRLSFNDSNSPFLITPPED---------DSFLYVVMPVRL 365 (365)
T ss_pred EEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf 7999979999999853899-----879999858999789986899---------964899961329